Protein–RNA interactions for Protein: Q8N3C7

CLIP4, CAP-Gly domain-containing linker protein 4, humanhuman

Predictions only

Length 705 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP4Q8N3C7 ARFGAP1-202ENST00000370275 3467 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.16
CLIP4Q8N3C7 SPATS2-223ENST00000553127 3320 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
CLIP4Q8N3C7 PAM-201ENST00000304400 3156 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.16
CLIP4Q8N3C7 C15orf41-208ENST00000566621 2866 ntAPPRIS P3 TSL 5 BASIC14.02□□□□□ -0.16
CLIP4Q8N3C7 DHX36-213ENST00000496811 6733 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.16
CLIP4Q8N3C7 ABCB7-202ENST00000339447 2234 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
CLIP4Q8N3C7 RSPH3-201ENST00000252655 2175 ntAPPRIS P2 TSL 1 (best) BASIC14.02□□□□□ -0.16
CLIP4Q8N3C7 RGS9-202ENST00000443584 2078 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
CLIP4Q8N3C7 AC011462.1-202ENST00000540732 1960 ntAPPRIS P1 TSL 2 BASIC14.02□□□□□ -0.16
CLIP4Q8N3C7 GTF2IRD1-205ENST00000476977 5868 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
CLIP4Q8N3C7 AL137783.1-201ENST00000623494 1896 ntBASIC14.02□□□□□ -0.16
CLIP4Q8N3C7 CBFA2T3-201ENST00000268679 4477 ntAPPRIS P4 TSL 1 (best) BASIC14.02□□□□□ -0.16
CLIP4Q8N3C7 BORCS8-MEF2B-203ENST00000514819 1406 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.16
CLIP4Q8N3C7 FGFR3-201ENST00000260795 4132 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.17
CLIP4Q8N3C7 ACY3-201ENST00000255082 1300 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
CLIP4Q8N3C7 SAMD4A-208ENST00000555192 1337 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
CLIP4Q8N3C7 OPA1-205ENST00000361908 6439 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.17
CLIP4Q8N3C7 KDM5B-202ENST00000367264 6449 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
CLIP4Q8N3C7 HIST3H2A-201ENST00000366695 895 ntAPPRIS P1 BASIC14.02□□□□□ -0.17
CLIP4Q8N3C7 BEX2-202ENST00000372677 899 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
CLIP4Q8N3C7 TMEM26-AS1-201ENST00000389640 863 ntTSL 5 BASIC14.02□□□□□ -0.17
CLIP4Q8N3C7 GGCT-205ENST00000409436 954 ntTSL 3 BASIC14.02□□□□□ -0.17
CLIP4Q8N3C7 LINC00659-201ENST00000412500 540 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
CLIP4Q8N3C7 AL022068.1-202ENST00000432171 794 ntTSL 3 BASIC14.02□□□□□ -0.17
CLIP4Q8N3C7 SWI5-205ENST00000495313 466 ntAPPRIS ALT2 TSL 3 BASIC14.02□□□□□ -0.17
CLIP4Q8N3C7 AC009163.1-201ENST00000530512 573 ntTSL 4 BASIC14.02□□□□□ -0.17
CLIP4Q8N3C7 LINC01220-201ENST00000558575 715 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
CLIP4Q8N3C7 LYSMD2-204ENST00000560491 1026 ntTSL 3 BASIC14.02□□□□□ -0.17
CLIP4Q8N3C7 RAB3D-202ENST00000589655 924 ntAPPRIS P1 TSL 2 BASIC14.02□□□□□ -0.17
CLIP4Q8N3C7 GPALPP1-207ENST00000611650 899 ntBASIC14.02□□□□□ -0.17
CLIP4Q8N3C7 MIR8072-201ENST00000614241 80 ntBASIC14.02□□□□□ -0.17
CLIP4Q8N3C7 ORC5-208ENST00000626700 344 ntTSL 3 BASIC14.02□□□□□ -0.17
CLIP4Q8N3C7 RGMA-202ENST00000425933 3078 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.17
CLIP4Q8N3C7 PSMD9-207ENST00000541212 2784 ntAPPRIS P2 TSL 1 (best) BASIC14.02□□□□□ -0.17
CLIP4Q8N3C7 NFATC4-219ENST00000555167 4364 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
CLIP4Q8N3C7 CTCFL-205ENST00000423479 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.17
CLIP4Q8N3C7 JPH3-201ENST00000284262 3985 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
CLIP4Q8N3C7 CCND3-201ENST00000372987 2233 ntTSL 2 BASIC14.02□□□□□ -0.17
CLIP4Q8N3C7 AGPAT3-218ENST00000546158 2199 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.17
CLIP4Q8N3C7 LRRC41-208ENST00000617760 2158 ntTSL 5 BASIC14.02□□□□□ -0.17
CLIP4Q8N3C7 UMODL1-AS1-201ENST00000329015 2141 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
CLIP4Q8N3C7 FES-203ENST00000394302 2133 ntTSL 5 BASIC14.02□□□□□ -0.17
CLIP4Q8N3C7 TMEM198B-201ENST00000471276 1958 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
CLIP4Q8N3C7 HSPA7-201ENST00000445535 1927 ntBASIC14.02□□□□□ -0.17
CLIP4Q8N3C7 TMEM212-201ENST00000334567 1881 ntAPPRIS P1 TSL 2 BASIC14.01□□□□□ -0.17
CLIP4Q8N3C7 SNX14-203ENST00000369627 3111 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
CLIP4Q8N3C7 CENPO-202ENST00000380834 4386 ntAPPRIS P1 TSL 5 BASIC14.01□□□□□ -0.17
CLIP4Q8N3C7 OPA1-202ENST00000361510 6492 ntAPPRIS ALT2 TSL 5 BASIC14.01□□□□□ -0.17
CLIP4Q8N3C7 SPOCK3-202ENST00000357545 2936 ntAPPRIS P3 TSL 1 (best) BASIC14.01□□□□□ -0.17
CLIP4Q8N3C7 DDX19A-202ENST00000417604 1703 ntTSL 2 BASIC14.01□□□□□ -0.17
CLIP4Q8N3C7 TMPRSS3-203ENST00000398405 2754 ntAPPRIS ALT1 TSL 5 BASIC14.01□□□□□ -0.17
CLIP4Q8N3C7 SLC6A20-204ENST00000456124 2662 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
CLIP4Q8N3C7 BCAT2-201ENST00000316273 1552 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CLIP4Q8N3C7 LINC00174-204ENST00000421767 4702 ntTSL 5 BASIC14.01□□□□□ -0.17
CLIP4Q8N3C7 AC104758.3-201ENST00000563349 1453 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
CLIP4Q8N3C7 SLC16A1-207ENST00000538576 4374 ntAPPRIS P1 TSL 2 BASIC14.01□□□□□ -0.17
CLIP4Q8N3C7 ZNF890P-201ENST00000422060 1352 ntTSL 2 BASIC14.01□□□□□ -0.17
CLIP4Q8N3C7 UBAP1L-201ENST00000502113 1381 ntAPPRIS P1 TSL 5 BASIC14.01□□□□□ -0.17
CLIP4Q8N3C7 BCL11B-201ENST00000345514 7603 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
CLIP4Q8N3C7 FBN3-205ENST00000600128 9362 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CLIP4Q8N3C7 PPP1CB-203ENST00000395366 4893 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CLIP4Q8N3C7 LRRC8D-201ENST00000337338 3950 ntAPPRIS P1 TSL 2 BASIC14.01□□□□□ -0.17
CLIP4Q8N3C7 HNRNPH3-202ENST00000354695 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CLIP4Q8N3C7 TRMT1-201ENST00000221504 2179 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
CLIP4Q8N3C7 AL731661.1-201ENST00000438217 758 ntTSL 5 BASIC14.01□□□□□ -0.17
CLIP4Q8N3C7 MOGAT3-203ENST00000440203 1219 ntAPPRIS ALT2 TSL 2 BASIC14.01□□□□□ -0.17
CLIP4Q8N3C7 METTL21A-209ENST00000448823 869 ntTSL 5 BASIC14.01□□□□□ -0.17
CLIP4Q8N3C7 AC019103.1-201ENST00000503095 272 ntTSL 3 BASIC14.01□□□□□ -0.17
CLIP4Q8N3C7 AC009902.2-201ENST00000518880 620 ntTSL 4 BASIC14.01□□□□□ -0.17
CLIP4Q8N3C7 EVX1-AS-202ENST00000519050 576 ntTSL 4 BASIC14.01□□□□□ -0.17
CLIP4Q8N3C7 AC090735.1-201ENST00000523881 488 ntTSL 4 BASIC14.01□□□□□ -0.17
CLIP4Q8N3C7 HBS1L-208ENST00000525067 582 ntTSL 3 BASIC14.01□□□□□ -0.17
CLIP4Q8N3C7 IL32-215ENST00000529550 772 ntAPPRIS P4 TSL 3 BASIC14.01□□□□□ -0.17
CLIP4Q8N3C7 AL390726.5-201ENST00000562942 871 ntTSL 2 BASIC14.01□□□□□ -0.17
CLIP4Q8N3C7 PIMREG-202ENST00000570337 891 ntTSL 5 BASIC14.01□□□□□ -0.17
CLIP4Q8N3C7 PIMREG-203ENST00000571373 1002 ntTSL 3 BASIC14.01□□□□□ -0.17
CLIP4Q8N3C7 HIST1H2BO-201ENST00000616182 381 ntAPPRIS P1 BASIC14.01□□□□□ -0.17
CLIP4Q8N3C7 WASHC2A-203ENST00000351071 4642 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
CLIP4Q8N3C7 CCDC117-202ENST00000421503 3766 ntTSL 2 BASIC14.01□□□□□ -0.17
CLIP4Q8N3C7 MAP3K12-203ENST00000547035 2944 ntAPPRIS ALT2 TSL 5 BASIC14.01□□□□□ -0.17
CLIP4Q8N3C7 MBD4-204ENST00000503197 2099 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
CLIP4Q8N3C7 CNOT3-201ENST00000221232 2852 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CLIP4Q8N3C7 CPSF7-201ENST00000340437 3695 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
CLIP4Q8N3C7 BCAR1-208ENST00000542031 2846 ntAPPRIS ALT2 TSL 2 BASIC14.01□□□□□ -0.17
CLIP4Q8N3C7 DNAJC22-202ENST00000549441 4412 ntAPPRIS P1 TSL 2 BASIC14.01□□□□□ -0.17
CLIP4Q8N3C7 CGN-201ENST00000271636 5091 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CLIP4Q8N3C7 AC113367.3-201ENST00000508316 1912 ntBASIC14.01□□□□□ -0.17
CLIP4Q8N3C7 ARHGAP27-203ENST00000428638 4242 ntAPPRIS P2 TSL 5 BASIC14.01□□□□□ -0.17
CLIP4Q8N3C7 DHX16-202ENST00000376442 3445 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CLIP4Q8N3C7 FBXO21-202ENST00000427718 4138 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
CLIP4Q8N3C7 WAC-AS1-202ENST00000528337 2608 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
CLIP4Q8N3C7 GFRA1-201ENST00000355422 2583 ntAPPRIS ALT2 TSL 5 BASIC14.01□□□□□ -0.17
CLIP4Q8N3C7 AL391244.1-206ENST00000447725 1843 ntTSL 5 BASIC14.01□□□□□ -0.17
CLIP4Q8N3C7 AL359643.2-201ENST00000606227 3273 ntTSL 2 BASIC14.01□□□□□ -0.17
CLIP4Q8N3C7 PPT1-213ENST00000641319 2388 ntBASIC14.01□□□□□ -0.17
CLIP4Q8N3C7 SPG11-210ENST00000558319 6426 ntAPPRIS ALT2 TSL 5 BASIC14.01□□□□□ -0.17
CLIP4Q8N3C7 SLC12A5-211ENST00000616933 6166 ntTSL 5 BASIC14.01□□□□□ -0.17
CLIP4Q8N3C7 PHTF2-206ENST00000422959 3525 ntAPPRIS P4 TSL 5 BASIC14.01□□□□□ -0.17
CLIP4Q8N3C7 CD99L2-205ENST00000437787 3493 ntTSL 2 BASIC14□□□□□ -0.17
CLIP4Q8N3C7 CHMP7-202ENST00000397677 3403 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 31.4 ms