Protein–RNA interactions for Protein: Q7Z494

NPHP3, Nephrocystin-3, humanhuman

Predictions only

Length 1,330 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3Q7Z494 AC011451.3-201ENST00000634951 582 ntTSL 3 BASIC19.72■□□□□ 0.75
NPHP3Q7Z494 RALGAPA1-219ENST00000637992 8512 ntTSL 5 BASIC19.72■□□□□ 0.75
NPHP3Q7Z494 DUS2-207ENST00000565263 2310 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
NPHP3Q7Z494 PLAGL1-211ENST00000625622 3216 ntAPPRIS P1 TSL 2 BASIC19.71■□□□□ 0.75
NPHP3Q7Z494 UBE2O-201ENST00000319380 5436 ntAPPRIS P2 TSL 1 (best) BASIC19.71■□□□□ 0.75
NPHP3Q7Z494 BHLHE41-201ENST00000242728 3837 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
NPHP3Q7Z494 OPRM1-201ENST00000229768 1465 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
NPHP3Q7Z494 OPRM1-207ENST00000428397 1481 ntAPPRIS P3 TSL 1 (best) BASIC19.71■□□□□ 0.75
NPHP3Q7Z494 RBP1-205ENST00000492918 1487 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
NPHP3Q7Z494 MRM2-201ENST00000242257 1601 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
NPHP3Q7Z494 CACNA1G-206ENST00000416767 4899 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
NPHP3Q7Z494 B3GNTL1-211ENST00000576599 1787 ntTSL 2 BASIC19.71■□□□□ 0.75
NPHP3Q7Z494 AC021683.1-201ENST00000585798 1767 ntTSL 5 BASIC19.71■□□□□ 0.75
NPHP3Q7Z494 CTSO-201ENST00000433477 2954 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
NPHP3Q7Z494 NRCAM-217ENST00000613830 3025 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
NPHP3Q7Z494 KRT23-201ENST00000209718 1987 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
NPHP3Q7Z494 NIPAL3-202ENST00000339255 1676 ntTSL 5 BASIC19.71■□□□□ 0.75
NPHP3Q7Z494 PHB-210ENST00000511832 1509 ntTSL 2 BASIC19.71■□□□□ 0.75
NPHP3Q7Z494 SNTB2-201ENST00000336278 9789 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
NPHP3Q7Z494 DNMT3L-204ENST00000628202 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
NPHP3Q7Z494 KLF10-202ENST00000395884 3659 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
NPHP3Q7Z494 PLCG1-202ENST00000373271 7395 ntAPPRIS ALT1 TSL 1 (best) BASIC19.71■□□□□ 0.75
NPHP3Q7Z494 PIAS3-201ENST00000369298 2761 ntTSL 5 BASIC19.71■□□□□ 0.75
NPHP3Q7Z494 KCNJ18-201ENST00000567955 2196 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
NPHP3Q7Z494 TBC1D2B-201ENST00000300584 6067 ntAPPRIS ALT2 TSL 5 BASIC19.71■□□□□ 0.75
NPHP3Q7Z494 DOK1-202ENST00000340004 1722 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
NPHP3Q7Z494 TNFRSF10C-201ENST00000356864 1718 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
NPHP3Q7Z494 CHST10-201ENST00000264249 2842 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
NPHP3Q7Z494 CIAPIN1-213ENST00000569370 1559 ntTSL 3 BASIC19.71■□□□□ 0.75
NPHP3Q7Z494 HSPA1B-201ENST00000375650 2521 ntAPPRIS P1 BASIC19.71■□□□□ 0.75
NPHP3Q7Z494 KRT15-201ENST00000254043 5237 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
NPHP3Q7Z494 ALOX15B-204ENST00000572022 2396 ntTSL 2 BASIC19.71■□□□□ 0.75
NPHP3Q7Z494 SH2B1-203ENST00000359285 3033 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
NPHP3Q7Z494 AC012506.1-201ENST00000423706 525 ntTSL 4 BASIC19.71■□□□□ 0.75
NPHP3Q7Z494 AC008026.2-201ENST00000495438 348 ntBASIC19.71■□□□□ 0.75
NPHP3Q7Z494 AC095040.1-201ENST00000513286 675 ntBASIC19.71■□□□□ 0.75
NPHP3Q7Z494 AC016266.1-201ENST00000557558 729 ntTSL 3 BASIC19.71■□□□□ 0.75
NPHP3Q7Z494 TRMT112P3-201ENST00000580149 358 ntBASIC19.71■□□□□ 0.75
NPHP3Q7Z494 PROX1-AS1-235ENST00000628896 711 ntTSL 5 BASIC19.71■□□□□ 0.75
NPHP3Q7Z494 VPS37C-201ENST00000301765 2865 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
NPHP3Q7Z494 ELK1-203ENST00000376983 2258 ntAPPRIS P3 TSL 1 (best) BASIC19.71■□□□□ 0.75
NPHP3Q7Z494 DVL1-202ENST00000378891 2926 ntAPPRIS P3 TSL 1 (best) BASIC19.71■□□□□ 0.75
NPHP3Q7Z494 AL589740.1-203ENST00000433637 1984 ntTSL 2 BASIC19.7■□□□□ 0.74
NPHP3Q7Z494 ASB10-201ENST00000275838 1820 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
NPHP3Q7Z494 PDYN-AS1-201ENST00000446562 1802 ntTSL 2 BASIC19.7■□□□□ 0.74
NPHP3Q7Z494 NOTCH3-201ENST00000263388 8666 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
NPHP3Q7Z494 AC005906.2-205ENST00000640862 1522 ntTSL 5 BASIC19.7■□□□□ 0.74
NPHP3Q7Z494 NRSN2-210ENST00000621012 1852 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
NPHP3Q7Z494 FUCA1P1-201ENST00000374476 1351 ntBASIC19.7■□□□□ 0.74
NPHP3Q7Z494 NFATC3-222ENST00000575270 3824 ntTSL 5 BASIC19.7■□□□□ 0.74
NPHP3Q7Z494 FLJ42969-201ENST00000514926 1948 ntTSL 2 BASIC19.7■□□□□ 0.74
NPHP3Q7Z494 GPD1-205ENST00000548814 1591 ntTSL 2 BASIC19.7■□□□□ 0.74
NPHP3Q7Z494 LETMD1-201ENST00000262055 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
NPHP3Q7Z494 LETMD1-203ENST00000418425 2123 ntTSL 2 BASIC19.7■□□□□ 0.74
NPHP3Q7Z494 KHSRPP1-201ENST00000427983 1768 ntBASIC19.7■□□□□ 0.74
NPHP3Q7Z494 MRPL55-205ENST00000366731 1423 ntTSL 2 BASIC19.7■□□□□ 0.74
NPHP3Q7Z494 HYAL1-202ENST00000320295 2324 ntAPPRIS P1 TSL 2 BASIC19.7■□□□□ 0.74
NPHP3Q7Z494 AC023024.2-201ENST00000623561 1993 ntBASIC19.7■□□□□ 0.74
NPHP3Q7Z494 POC1B-202ENST00000393179 3096 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
NPHP3Q7Z494 CCNC-209ENST00000520371 2186 ntTSL 5 BASIC19.7■□□□□ 0.74
NPHP3Q7Z494 CCT6A-201ENST00000275603 2719 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
NPHP3Q7Z494 FAM83G-202ENST00000388995 5266 ntAPPRIS P1 TSL 5 BASIC19.7■□□□□ 0.74
NPHP3Q7Z494 IGHV5-51-201ENST00000390626 410 ntAPPRIS P1 BASIC19.7■□□□□ 0.74
NPHP3Q7Z494 AL391415.1-201ENST00000439844 400 ntTSL 3 BASIC19.7■□□□□ 0.74
NPHP3Q7Z494 TAGLN3-203ENST00000455401 1164 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
NPHP3Q7Z494 MUTYH-231ENST00000488731 740 ntTSL 5 BASIC19.7■□□□□ 0.74
NPHP3Q7Z494 AC009487.3-201ENST00000505579 560 ntTSL 4 BASIC19.7■□□□□ 0.74
NPHP3Q7Z494 YPEL4-209ENST00000534711 889 ntAPPRIS P1 TSL 5 BASIC19.7■□□□□ 0.74
NPHP3Q7Z494 AC013553.1-201ENST00000560906 267 ntBASIC19.7■□□□□ 0.74
NPHP3Q7Z494 MT2A-202ENST00000561491 581 ntTSL 2 BASIC19.7■□□□□ 0.74
NPHP3Q7Z494 AC140658.4-201ENST00000561990 352 ntBASIC19.7■□□□□ 0.74
NPHP3Q7Z494 NDUFB10P1-201ENST00000567319 521 ntBASIC19.7■□□□□ 0.74
NPHP3Q7Z494 ZNF286A-212ENST00000580259 527 ntTSL 4 BASIC19.7■□□□□ 0.74
NPHP3Q7Z494 AC023421.2-201ENST00000589510 313 ntTSL 5 BASIC19.7■□□□□ 0.74
NPHP3Q7Z494 ARHGEF3-212ENST00000495373 2024 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
NPHP3Q7Z494 PTK7-202ENST00000230419 4272 ntAPPRIS P3 TSL 1 (best) BASIC19.7■□□□□ 0.74
NPHP3Q7Z494 LINC02076-201ENST00000577684 1871 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
NPHP3Q7Z494 AL591122.2-201ENST00000624125 1853 ntBASIC19.7■□□□□ 0.74
NPHP3Q7Z494 MC5R-201ENST00000324750 1319 ntAPPRIS P1 BASIC19.7■□□□□ 0.74
NPHP3Q7Z494 FXYD3-208ENST00000604404 1322 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
NPHP3Q7Z494 EIF4ENIF1-206ENST00000397525 3695 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
NPHP3Q7Z494 CYP27B1-201ENST00000228606 2540 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
NPHP3Q7Z494 PAPOLB-201ENST00000404991 4262 ntAPPRIS P1 BASIC19.69■□□□□ 0.74
NPHP3Q7Z494 AL109809.1-201ENST00000418979 1367 ntBASIC19.69■□□□□ 0.74
NPHP3Q7Z494 PHRF1-201ENST00000264555 5523 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
NPHP3Q7Z494 NR3C1-209ENST00000503201 2594 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
NPHP3Q7Z494 ZNF514-202ENST00000411425 2755 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
NPHP3Q7Z494 CCDC144A-202ENST00000340621 2214 ntTSL 2 BASIC19.69■□□□□ 0.74
NPHP3Q7Z494 LETM2-205ENST00000519476 2240 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
NPHP3Q7Z494 CNN1-210ENST00000592923 1848 ntTSL 2 BASIC19.69■□□□□ 0.74
NPHP3Q7Z494 TPM4-202ENST00000344824 1417 ntAPPRIS P1 TSL 5 BASIC19.69■□□□□ 0.74
NPHP3Q7Z494 DDHD1-201ENST00000323669 5503 ntTSL 2 BASIC19.69■□□□□ 0.74
NPHP3Q7Z494 PTGDR2-201ENST00000332539 2895 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
NPHP3Q7Z494 PTPN5-201ENST00000358540 3135 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
NPHP3Q7Z494 AC082651.4-201ENST00000483023 1852 ntTSL 5 BASIC19.69■□□□□ 0.74
NPHP3Q7Z494 CLPTM1-202ENST00000541297 2732 ntTSL 2 BASIC19.69■□□□□ 0.74
NPHP3Q7Z494 NR1H3-203ENST00000405853 1480 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
NPHP3Q7Z494 MC3R-201ENST00000243911 1084 ntAPPRIS P1 BASIC19.69■□□□□ 0.74
NPHP3Q7Z494 SNRPC-201ENST00000244520 842 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
NPHP3Q7Z494 PTGER4P2-201ENST00000328411 252 ntBASIC19.69■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 59.2 ms