Protein–RNA interactions for Protein: Q7Z407

CSMD3, CUB and sushi domain-containing protein 3, humanhuman

Predictions only

Length 3,707 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3Q7Z407 RN7SL357P-201ENST00000581065 298 ntBASIC10.04□□□□□ -0.8
CSMD3Q7Z407 AC090386.2-201ENST00000623010 1039 ntBASIC10.04□□□□□ -0.8
CSMD3Q7Z407 MS4A15-201ENST00000337911 1536 ntTSL 1 (best) BASIC10.04□□□□□ -0.8
CSMD3Q7Z407 DSCAM-AS1-202ENST00000427451 1640 ntTSL 1 (best) BASIC10.04□□□□□ -0.8
CSMD3Q7Z407 C21orf33-201ENST00000291577 1674 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
CSMD3Q7Z407 CD3EAP-202ENST00000589804 1830 ntAPPRIS ALT2 TSL 1 (best) BASIC10.04□□□□□ -0.8
CSMD3Q7Z407 TCF25-201ENST00000263346 2233 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
CSMD3Q7Z407 SLC29A1-205ENST00000371740 2219 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
CSMD3Q7Z407 LIMS2-208ENST00000410011 2335 ntAPPRIS ALT1 TSL 1 (best) BASIC10.04□□□□□ -0.8
CSMD3Q7Z407 MED16-207ENST00000589119 2772 ntAPPRIS P2 TSL 1 (best) BASIC10.04□□□□□ -0.8
CSMD3Q7Z407 FBXO46-201ENST00000317683 3001 ntAPPRIS P1 TSL 2 BASIC10.04□□□□□ -0.8
CSMD3Q7Z407 JAG2-201ENST00000331782 5835 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
CSMD3Q7Z407 PRMT6-201ENST00000370078 2616 ntAPPRIS P1 BASIC10.04□□□□□ -0.8
CSMD3Q7Z407 WFIKKN2-202ENST00000426127 2193 ntTSL 2 BASIC10.04□□□□□ -0.8
CSMD3Q7Z407 SF3B4-201ENST00000271628 2085 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
CSMD3Q7Z407 LINC00996-201ENST00000477392 2043 ntTSL 1 (best) BASIC10.04□□□□□ -0.8
CSMD3Q7Z407 NIPA1-207ENST00000561183 1675 ntAPPRIS ALT2 TSL 1 (best) BASIC10.04□□□□□ -0.8
CSMD3Q7Z407 MRGPRX4-201ENST00000314254 1444 ntAPPRIS P1 BASIC10.04□□□□□ -0.8
CSMD3Q7Z407 LINC02417-201ENST00000542449 515 ntTSL 2 BASIC10.04□□□□□ -0.8
CSMD3Q7Z407 AC079174.1-201ENST00000552486 312 ntTSL 3 BASIC10.04□□□□□ -0.8
CSMD3Q7Z407 AC010632.2-201ENST00000588369 1224 ntBASIC10.04□□□□□ -0.8
CSMD3Q7Z407 PTOV1-AS2-203ENST00000601893 719 ntTSL 4 BASIC10.04□□□□□ -0.8
CSMD3Q7Z407 RARS-210ENST00000626454 177 ntTSL 5 BASIC10.04□□□□□ -0.8
CSMD3Q7Z407 PROX1-AS1-235ENST00000628896 711 ntTSL 5 BASIC10.04□□□□□ -0.8
CSMD3Q7Z407 BX322534.1-201ENST00000635574 241 ntBASIC10.04□□□□□ -0.8
CSMD3Q7Z407 AC215524.1-201ENST00000635696 241 ntBASIC10.04□□□□□ -0.8
CSMD3Q7Z407 NFATC1-218ENST00000592223 2531 ntAPPRIS ALT2 TSL 1 (best) BASIC10.03□□□□□ -0.8
CSMD3Q7Z407 DOC2GP-204ENST00000639052 2548 ntBASIC10.03□□□□□ -0.8
CSMD3Q7Z407 HTR3A-203ENST00000375498 2235 ntTSL 1 (best) BASIC10.03□□□□□ -0.8
CSMD3Q7Z407 FDFT1-214ENST00000528812 2013 ntTSL 2 BASIC10.03□□□□□ -0.8
CSMD3Q7Z407 HTR7-203ENST00000371719 3033 ntAPPRIS ALT1 TSL 1 (best) BASIC10.03□□□□□ -0.8
CSMD3Q7Z407 MTFMT-201ENST00000220058 2734 ntAPPRIS P1 TSL 1 (best) BASIC10.03□□□□□ -0.8
CSMD3Q7Z407 COL25A1-203ENST00000399132 2724 ntAPPRIS P4 TSL 5 BASIC10.03□□□□□ -0.8
CSMD3Q7Z407 GCLC-213ENST00000616923 3694 ntTSL 1 (best) BASIC10.03□□□□□ -0.8
CSMD3Q7Z407 BSDC1-205ENST00000446293 1505 ntTSL 2 BASIC10.03□□□□□ -0.8
CSMD3Q7Z407 MPI-203ENST00000535694 1523 ntTSL 2 BASIC10.03□□□□□ -0.8
CSMD3Q7Z407 AC006372.4-201ENST00000624122 1543 ntBASIC10.03□□□□□ -0.8
CSMD3Q7Z407 ANAPC5-201ENST00000261819 2513 ntAPPRIS P1 TSL 1 (best) BASIC10.03□□□□□ -0.8
CSMD3Q7Z407 CRYL1-201ENST00000298248 1485 ntAPPRIS P1 TSL 1 (best) BASIC10.03□□□□□ -0.8
CSMD3Q7Z407 CNMD-203ENST00000448904 1444 ntAPPRIS ALT1 TSL 1 (best) BASIC10.03□□□□□ -0.8
CSMD3Q7Z407 AIFM3-203ENST00000405089 2333 ntAPPRIS ALT1 TSL 2 BASIC10.03□□□□□ -0.8
CSMD3Q7Z407 WASH7P-201ENST00000488147 1351 ntBASIC10.03□□□□□ -0.8
CSMD3Q7Z407 NFKB2-203ENST00000369966 3101 ntAPPRIS P4 TSL 1 (best) BASIC10.03□□□□□ -0.8
CSMD3Q7Z407 STXBP5-207ENST00000546097 2160 ntTSL 1 (best) BASIC10.03□□□□□ -0.8
CSMD3Q7Z407 KCNH3-201ENST00000257981 3867 ntAPPRIS P1 TSL 1 (best) BASIC10.03□□□□□ -0.8
CSMD3Q7Z407 VPS25-201ENST00000253794 1101 ntAPPRIS P1 TSL 1 (best) BASIC10.03□□□□□ -0.8
CSMD3Q7Z407 TRBV4-1-201ENST00000390357 373 ntAPPRIS P1 BASIC10.03□□□□□ -0.8
CSMD3Q7Z407 TRBV4-2-201ENST00000390392 455 ntAPPRIS P1 BASIC10.03□□□□□ -0.8
CSMD3Q7Z407 AL512599.1-201ENST00000430724 685 ntBASIC10.03□□□□□ -0.8
CSMD3Q7Z407 AC092612.1-201ENST00000514501 998 ntBASIC10.03□□□□□ -0.8
CSMD3Q7Z407 AC130456.3-201ENST00000561762 633 ntTSL 3 BASIC10.03□□□□□ -0.8
CSMD3Q7Z407 ZNF286A-212ENST00000580259 527 ntTSL 4 BASIC10.03□□□□□ -0.8
CSMD3Q7Z407 RASGRF2-206ENST00000638442 2842 ntTSL 5 BASIC10.03□□□□□ -0.8
CSMD3Q7Z407 TGFB1-201ENST00000221930 2769 ntAPPRIS P1 TSL 1 (best) BASIC10.03□□□□□ -0.8
CSMD3Q7Z407 PCDHGB8P-201ENST00000502926 1973 ntBASIC10.03□□□□□ -0.8
CSMD3Q7Z407 SAP130-202ENST00000259235 4065 ntTSL 1 (best) BASIC10.03□□□□□ -0.8
CSMD3Q7Z407 AC092384.2-204ENST00000565053 2566 ntTSL 2 BASIC10.03□□□□□ -0.8
CSMD3Q7Z407 EXOC3L1-201ENST00000314586 2510 ntAPPRIS P1 TSL 2 BASIC10.03□□□□□ -0.8
CSMD3Q7Z407 SMAP1-202ENST00000370452 2491 ntTSL 2 BASIC10.03□□□□□ -0.8
CSMD3Q7Z407 AL390038.1-201ENST00000419814 2481 ntTSL 1 (best) BASIC10.03□□□□□ -0.8
CSMD3Q7Z407 AL359258.1-201ENST00000438965 2481 ntTSL 1 (best) BASIC10.03□□□□□ -0.8
CSMD3Q7Z407 RNF145-212ENST00000611185 3624 ntAPPRIS P1 TSL 5 BASIC10.03□□□□□ -0.8
CSMD3Q7Z407 AC090099.1-203ENST00000527059 2945 ntTSL 1 (best) BASIC10.03□□□□□ -0.8
CSMD3Q7Z407 AKR1B1-201ENST00000285930 1409 ntAPPRIS P1 TSL 1 (best) BASIC10.03□□□□□ -0.8
CSMD3Q7Z407 PCCB-215ENST00000482086 1436 ntTSL 3 BASIC10.03□□□□□ -0.8
CSMD3Q7Z407 AC117503.4-201ENST00000623229 1418 ntBASIC10.03□□□□□ -0.8
CSMD3Q7Z407 USP17L2-201ENST00000333796 1910 ntAPPRIS P1 BASIC10.03□□□□□ -0.8
CSMD3Q7Z407 PSG4-203ENST00000433626 1887 ntTSL 2 BASIC10.03□□□□□ -0.8
CSMD3Q7Z407 CPSF1-213ENST00000620219 4462 ntAPPRIS P1 TSL 1 (best) BASIC10.03□□□□□ -0.8
CSMD3Q7Z407 ENDOV-204ENST00000518137 2815 ntAPPRIS P1 TSL 2 BASIC10.03□□□□□ -0.8
CSMD3Q7Z407 TMEM14C-201ENST00000229563 1113 ntAPPRIS P1 TSL 1 (best) BASIC10.03□□□□□ -0.8
CSMD3Q7Z407 JPT2-203ENST00000382711 894 ntTSL 4 BASIC10.03□□□□□ -0.8
CSMD3Q7Z407 OR52M2P-201ENST00000414298 959 ntBASIC10.03□□□□□ -0.8
CSMD3Q7Z407 NME6-208ENST00000435684 599 ntTSL 2 BASIC10.03□□□□□ -0.8
CSMD3Q7Z407 AL451000.1-201ENST00000451300 1186 ntBASIC10.03□□□□□ -0.8
CSMD3Q7Z407 AADACL2-AS1-202ENST00000483843 628 ntTSL 5 BASIC10.03□□□□□ -0.8
CSMD3Q7Z407 AC023906.1-201ENST00000486386 453 ntBASIC10.03□□□□□ -0.8
CSMD3Q7Z407 APOBEC3H-207ENST00000613996 465 ntTSL 1 (best) BASIC10.03□□□□□ -0.8
CSMD3Q7Z407 ARHGEF16-202ENST00000378373 2211 ntTSL 1 (best) BASIC10.03□□□□□ -0.8
CSMD3Q7Z407 AC005899.8-201ENST00000625127 3153 ntTSL 5 BASIC10.03□□□□□ -0.8
CSMD3Q7Z407 C10orf10-201ENST00000298295 2120 ntAPPRIS P1 TSL 1 (best) BASIC10.03□□□□□ -0.8
CSMD3Q7Z407 ARHGAP9-203ENST00000424809 2569 ntTSL 2 BASIC10.03□□□□□ -0.8
CSMD3Q7Z407 PERM1-201ENST00000341290 3035 ntAPPRIS ALT2 TSL 2 BASIC10.03□□□□□ -0.8
CSMD3Q7Z407 MLF1-217ENST00000619577 2290 ntTSL 5 BASIC10.03□□□□□ -0.8
CSMD3Q7Z407 MED7-202ENST00000420343 1382 ntAPPRIS P1 TSL 2 BASIC10.03□□□□□ -0.8
CSMD3Q7Z407 AFDN-201ENST00000344191 5249 ntTSL 5 BASIC10.03□□□□□ -0.8
CSMD3Q7Z407 SAFB-205ENST00000588852 2842 ntAPPRIS ALT2 TSL 1 (best) BASIC10.03□□□□□ -0.8
CSMD3Q7Z407 HNRNPU-201ENST00000283179 3120 ntAPPRIS ALT2 TSL 5 BASIC10.03□□□□□ -0.8
CSMD3Q7Z407 AL391839.2-201ENST00000412085 383 ntTSL 5 BASIC10.03□□□□□ -0.8
CSMD3Q7Z407 AC006372.2-201ENST00000433660 292 ntTSL 3 BASIC10.03□□□□□ -0.8
CSMD3Q7Z407 AC136601.1-201ENST00000521803 666 ntTSL 3 BASIC10.03□□□□□ -0.8
CSMD3Q7Z407 KRT8P1-201ENST00000557533 1207 ntBASIC10.03□□□□□ -0.8
CSMD3Q7Z407 COX5A-205ENST00000568517 582 ntTSL 3 BASIC10.03□□□□□ -0.8
CSMD3Q7Z407 AC073578.2-201ENST00000618927 464 ntTSL 4 BASIC10.03□□□□□ -0.8
CSMD3Q7Z407 RNF11-201ENST00000242719 3084 ntAPPRIS P1 TSL 1 (best) BASIC10.03□□□□□ -0.8
CSMD3Q7Z407 MAP2K3-202ENST00000342679 2303 ntAPPRIS P1 TSL 1 (best) BASIC10.03□□□□□ -0.8
CSMD3Q7Z407 RER1-209ENST00000605895 3044 ntAPPRIS P1 TSL 1 (best) BASIC10.03□□□□□ -0.8
CSMD3Q7Z407 PLIN1-201ENST00000300055 2953 ntAPPRIS P1 TSL 1 (best) BASIC10.02□□□□□ -0.8
CSMD3Q7Z407 LRCH3-202ENST00000414675 2299 ntAPPRIS ALT2 TSL 2 BASIC10.02□□□□□ -0.8
CSMD3Q7Z407 UVSSA-206ENST00000507531 2597 ntAPPRIS P2 TSL 1 (best) BASIC10.02□□□□□ -0.8
Retrieved 100 of 98,524 protein–RNA pairs in 35 ms