Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 RBM39-205ENST00000397370 612 ntTSL 2 BASIC12.45□□□□□ -0.42
PDLIM3Q53GG5 MIR1247-201ENST00000408206 136 ntBASIC12.45□□□□□ -0.42
PDLIM3Q53GG5 IFNL3-201ENST00000413851 656 ntAPPRIS P2 TSL 1 (best) BASIC12.45□□□□□ -0.42
PDLIM3Q53GG5 RAB34-206ENST00000415040 1293 ntTSL 2 BASIC12.45□□□□□ -0.42
PDLIM3Q53GG5 AL365277.1-206ENST00000417869 487 ntTSL 3 BASIC12.45□□□□□ -0.42
PDLIM3Q53GG5 GPAA1P2-201ENST00000417923 928 ntBASIC12.45□□□□□ -0.42
PDLIM3Q53GG5 RPS24-203ENST00000435275 656 ntAPPRIS ALT1 TSL 2 BASIC12.45□□□□□ -0.42
PDLIM3Q53GG5 AL606534.2-205ENST00000437691 346 ntTSL 5 BASIC12.45□□□□□ -0.42
PDLIM3Q53GG5 SNRPB-202ENST00000438552 1008 ntAPPRIS P4 TSL 1 (best) BASIC12.45□□□□□ -0.42
PDLIM3Q53GG5 AL365277.1-204ENST00000450157 599 ntTSL 3 BASIC12.45□□□□□ -0.42
PDLIM3Q53GG5 NECAP2-203ENST00000457722 935 ntTSL 2 BASIC12.45□□□□□ -0.42
PDLIM3Q53GG5 AL365277.1-203ENST00000458207 693 ntTSL 3 BASIC12.45□□□□□ -0.42
PDLIM3Q53GG5 FADS2-212ENST00000522639 360 ntTSL 5 BASIC12.45□□□□□ -0.42
PDLIM3Q53GG5 NEIL2-207ENST00000528323 998 ntTSL 2 BASIC12.45□□□□□ -0.42
PDLIM3Q53GG5 BANF1P1-201ENST00000553684 263 ntBASIC12.45□□□□□ -0.42
PDLIM3Q53GG5 AL356805.1-201ENST00000556383 341 ntTSL 3 BASIC12.45□□□□□ -0.42
PDLIM3Q53GG5 AC012322.1-201ENST00000561657 861 ntTSL 3 BASIC12.45□□□□□ -0.42
PDLIM3Q53GG5 AC009133.2-201ENST00000566537 547 ntTSL 4 BASIC12.45□□□□□ -0.42
PDLIM3Q53GG5 AC133550.2-201ENST00000567731 544 ntTSL 4 BASIC12.45□□□□□ -0.42
PDLIM3Q53GG5 AC027601.2-201ENST00000571085 805 ntTSL 5 BASIC12.45□□□□□ -0.42
PDLIM3Q53GG5 FADS2-215ENST00000574708 385 ntTSL 3 BASIC12.45□□□□□ -0.42
PDLIM3Q53GG5 CD300LG-205ENST00000586233 942 ntAPPRIS ALT2 TSL 1 (best) BASIC12.45□□□□□ -0.42
PDLIM3Q53GG5 AC131235.3-202ENST00000608135 362 ntTSL 5 BASIC12.45□□□□□ -0.42
PDLIM3Q53GG5 RPS24-214ENST00000613865 538 ntTSL 5 BASIC12.45□□□□□ -0.42
PDLIM3Q53GG5 HAUS2-211ENST00000639412 375 ntTSL 2 BASIC12.45□□□□□ -0.42
PDLIM3Q53GG5 KIAA0895L-202ENST00000561621 3500 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
PDLIM3Q53GG5 PAX8-AS1-204ENST00000436293 2687 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
PDLIM3Q53GG5 AGAP4-208ENST00000618171 2387 ntTSL 5 BASIC12.45□□□□□ -0.42
PDLIM3Q53GG5 ARC-201ENST00000356613 2948 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
PDLIM3Q53GG5 CRH-201ENST00000276571 1543 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
PDLIM3Q53GG5 DMTN-203ENST00000381470 2601 ntTSL 5 BASIC12.45□□□□□ -0.42
PDLIM3Q53GG5 SPPL2B-207ENST00000610743 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC12.45□□□□□ -0.42
PDLIM3Q53GG5 HBP1-201ENST00000222574 2829 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
PDLIM3Q53GG5 CICP4-201ENST00000447359 2812 ntBASIC12.45□□□□□ -0.42
PDLIM3Q53GG5 TXNDC2-204ENST00000536353 1703 ntTSL 5 BASIC12.45□□□□□ -0.42
PDLIM3Q53GG5 TBXAS1-208ENST00000448866 1963 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
PDLIM3Q53GG5 PPP1R16A-201ENST00000292539 2722 ntAPPRIS P1 TSL 2 BASIC12.45□□□□□ -0.42
PDLIM3Q53GG5 SLC39A1-204ENST00000368623 2723 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
PDLIM3Q53GG5 HEPN1-201ENST00000408930 1434 ntAPPRIS P1 BASIC12.45□□□□□ -0.42
PDLIM3Q53GG5 GTF2H2C-210ENST00000510979 2952 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
PDLIM3Q53GG5 C1orf228-219ENST00000535358 1685 ntAPPRIS P2 TSL 5 BASIC12.45□□□□□ -0.42
PDLIM3Q53GG5 ADGRG6-202ENST00000296932 6849 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
PDLIM3Q53GG5 TPRX1-201ENST00000322175 1924 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
PDLIM3Q53GG5 IL1RN-203ENST00000361779 1922 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
PDLIM3Q53GG5 NPR1-202ENST00000368680 4236 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
PDLIM3Q53GG5 PER3-201ENST00000361923 6203 ntAPPRIS P3 TSL 1 (best) BASIC12.44□□□□□ -0.42
PDLIM3Q53GG5 APCDD1L-201ENST00000371149 3426 ntAPPRIS P2 TSL 1 (best) BASIC12.44□□□□□ -0.42
PDLIM3Q53GG5 GRIN1-203ENST00000371550 3940 ntTSL 5 BASIC12.44□□□□□ -0.42
PDLIM3Q53GG5 GMCL1-201ENST00000282570 4191 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
PDLIM3Q53GG5 CAD-202ENST00000403525 6900 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
PDLIM3Q53GG5 PKN2-201ENST00000316005 2632 ntTSL 5 BASIC12.44□□□□□ -0.42
PDLIM3Q53GG5 RCL1-204ENST00000381750 2134 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
PDLIM3Q53GG5 HMGA1-204ENST00000401473 1887 ntAPPRIS ALT1 TSL 1 (best) BASIC12.44□□□□□ -0.42
PDLIM3Q53GG5 AL035456.1-201ENST00000456064 1369 ntBASIC12.44□□□□□ -0.42
PDLIM3Q53GG5 EPHX2-202ENST00000517536 1600 ntTSL 5 BASIC12.44□□□□□ -0.42
PDLIM3Q53GG5 AP000845.1-201ENST00000581677 2131 ntBASIC12.44□□□□□ -0.42
PDLIM3Q53GG5 MIRLET7BHG-201ENST00000360737 4560 ntTSL 2 BASIC12.44□□□□□ -0.42
PDLIM3Q53GG5 ARHGEF26-AS1-204ENST00000491862 2598 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
PDLIM3Q53GG5 CCNF-202ENST00000397066 4283 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
PDLIM3Q53GG5 DNAJC22-201ENST00000395069 2059 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
PDLIM3Q53GG5 MGRN1-206ENST00000586183 1841 ntAPPRIS ALT2 TSL 5 BASIC12.44□□□□□ -0.42
PDLIM3Q53GG5 COMMD5-203ENST00000450361 1573 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
PDLIM3Q53GG5 USP19-208ENST00000453664 4719 ntAPPRIS ALT2 TSL 2 BASIC12.44□□□□□ -0.42
PDLIM3Q53GG5 FGD2-201ENST00000274963 3046 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
PDLIM3Q53GG5 KLRG1-201ENST00000266551 1335 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
PDLIM3Q53GG5 SLC25A36-201ENST00000324194 1301 ntAPPRIS ALT1 TSL 1 (best) BASIC12.44□□□□□ -0.42
PDLIM3Q53GG5 MEIKIN-203ENST00000442687 1315 ntAPPRIS P2 TSL 1 (best) BASIC12.44□□□□□ -0.42
PDLIM3Q53GG5 KLK8-211ENST00000600767 1324 ntAPPRIS P1 TSL 2 BASIC12.44□□□□□ -0.42
PDLIM3Q53GG5 OCRL-201ENST00000357121 5138 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
PDLIM3Q53GG5 ZNF772-204ENST00000427512 5130 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
PDLIM3Q53GG5 NFATC2-202ENST00000396009 7437 ntAPPRIS P3 TSL 1 (best) BASIC12.44□□□□□ -0.42
PDLIM3Q53GG5 KATNA1-203ENST00000367411 1984 ntAPPRIS P1 TSL 2 BASIC12.44□□□□□ -0.42
PDLIM3Q53GG5 FAM153B-220ENST00000515817 1966 ntAPPRIS P2 TSL 5 BASIC12.44□□□□□ -0.42
PDLIM3Q53GG5 FLT3LG-201ENST00000204637 1046 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
PDLIM3Q53GG5 BANF1-201ENST00000312175 1155 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
PDLIM3Q53GG5 TRIM74-202ENST00000395244 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC12.44□□□□□ -0.42
PDLIM3Q53GG5 AL353597.1-201ENST00000414875 998 ntTSL 5 BASIC12.44□□□□□ -0.42
PDLIM3Q53GG5 ZMYND10-AS1-201ENST00000440013 250 ntTSL 3 BASIC12.44□□□□□ -0.42
PDLIM3Q53GG5 AC253536.4-201ENST00000440539 267 ntBASIC12.44□□□□□ -0.42
PDLIM3Q53GG5 AL121753.1-201ENST00000444717 529 ntAPPRIS P1 TSL 3 BASIC12.44□□□□□ -0.42
PDLIM3Q53GG5 TRIM73-204ENST00000447409 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC12.44□□□□□ -0.42
PDLIM3Q53GG5 SYNPR-202ENST00000450542 1004 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
PDLIM3Q53GG5 AL513217.1-202ENST00000458139 600 ntTSL 3 BASIC12.44□□□□□ -0.42
PDLIM3Q53GG5 PTK7-212ENST00000476760 902 ntTSL 2 BASIC12.44□□□□□ -0.42
PDLIM3Q53GG5 AC109479.1-201ENST00000519603 624 ntTSL 2 BASIC12.44□□□□□ -0.42
PDLIM3Q53GG5 TP53AIP1-205ENST00000531399 806 ntAPPRIS P3 TSL 1 (best) BASIC12.44□□□□□ -0.42
PDLIM3Q53GG5 AC055876.2-201ENST00000531834 546 ntBASIC12.44□□□□□ -0.42
PDLIM3Q53GG5 EMC4-209ENST00000559421 497 ntTSL 2 BASIC12.44□□□□□ -0.42
PDLIM3Q53GG5 TMEM170A-203ENST00000566980 547 ntTSL 5 BASIC12.44□□□□□ -0.42
PDLIM3Q53GG5 AC105021.1-202ENST00000570572 669 ntBASIC12.44□□□□□ -0.42
PDLIM3Q53GG5 AC015910.1-201ENST00000579400 975 ntBASIC12.44□□□□□ -0.42
PDLIM3Q53GG5 AC004477.1-202ENST00000584428 539 ntTSL 2 BASIC12.44□□□□□ -0.42
PDLIM3Q53GG5 AC015936.2-201ENST00000593177 259 ntBASIC12.44□□□□□ -0.42
PDLIM3Q53GG5 LINC00237-203ENST00000593272 630 ntTSL 4 BASIC12.44□□□□□ -0.42
PDLIM3Q53GG5 AL136531.2-202ENST00000617804 573 ntAPPRIS P1 TSL 4 BASIC12.44□□□□□ -0.42
PDLIM3Q53GG5 AL160035.1-201ENST00000637583 576 ntTSL 4 BASIC12.44□□□□□ -0.42
PDLIM3Q53GG5 SYBU-207ENST00000433638 3104 ntAPPRIS ALT2 TSL 5 BASIC12.44□□□□□ -0.42
PDLIM3Q53GG5 DGKE-201ENST00000284061 8660 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
PDLIM3Q53GG5 GRK3-201ENST00000324198 9103 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
PDLIM3Q53GG5 CETN4P-206ENST00000642099 2168 ntBASIC12.44□□□□□ -0.42
Retrieved 100 of 98,524 protein–RNA pairs in 67.3 ms