Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 SYNCRIP-202ENST00000369622 3023 ntAPPRIS P3 TSL 1 (best) BASIC12.77□□□□□ -0.37
ABCA4P78363 EFEMP1-202ENST00000394555 3024 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
ABCA4P78363 CTSW-204ENST00000528419 1341 ntTSL 2 BASIC12.77□□□□□ -0.37
ABCA4P78363 FGFR1-204ENST00000356207 3824 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
ABCA4P78363 LANCL3-201ENST00000378619 3063 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
ABCA4P78363 C3orf33-205ENST00000534941 1804 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
ABCA4P78363 CD5L-201ENST00000368174 2191 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
ABCA4P78363 SHROOM1-208ENST00000617339 3638 ntAPPRIS ALT2 TSL 5 BASIC12.76□□□□□ -0.37
ABCA4P78363 NRIP1-203ENST00000400202 7671 ntAPPRIS P1 TSL 5 BASIC12.76□□□□□ -0.37
ABCA4P78363 GRSF1-208ENST00000545193 2682 ntTSL 2 BASIC12.76□□□□□ -0.37
ABCA4P78363 DEF8-210ENST00000563594 4450 ntAPPRIS P4 TSL 1 (best) BASIC12.76□□□□□ -0.37
ABCA4P78363 PLAG1-203ENST00000429357 1899 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
ABCA4P78363 FXYD5-201ENST00000342879 1580 ntAPPRIS P2 TSL 1 (best) BASIC12.76□□□□□ -0.37
ABCA4P78363 SFI1-209ENST00000443011 3579 ntTSL 5 BASIC12.76□□□□□ -0.37
ABCA4P78363 VGLL3-202ENST00000398399 10400 ntAPPRIS P3 TSL 1 (best) BASIC12.76□□□□□ -0.37
ABCA4P78363 KDM3A-203ENST00000409556 4928 ntAPPRIS P1 TSL 5 BASIC12.76□□□□□ -0.37
ABCA4P78363 DHODH-201ENST00000219240 2426 ntAPPRIS P2 TSL 1 (best) BASIC12.76□□□□□ -0.37
ABCA4P78363 ANKRD33-201ENST00000301190 1935 ntTSL 2 BASIC12.76□□□□□ -0.37
ABCA4P78363 RUBCNL-212ENST00000631139 1948 ntAPPRIS ALT2 TSL 2 BASIC12.76□□□□□ -0.37
ABCA4P78363 ELMO1-209ENST00000448602 2621 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
ABCA4P78363 TMEM19-201ENST00000266673 5656 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
ABCA4P78363 AC007686.3-201ENST00000619017 3487 ntBASIC12.76□□□□□ -0.37
ABCA4P78363 TSPO2-201ENST00000373158 718 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
ABCA4P78363 AL136988.1-201ENST00000414640 1029 ntTSL 3 BASIC12.76□□□□□ -0.37
ABCA4P78363 AL589986.1-201ENST00000429230 789 ntTSL 5 BASIC12.76□□□□□ -0.37
ABCA4P78363 LINC00322-201ENST00000450205 699 ntTSL 3 BASIC12.76□□□□□ -0.37
ABCA4P78363 IKBKB-212ENST00000519735 1166 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
ABCA4P78363 AC026803.1-201ENST00000569130 274 ntBASIC12.76□□□□□ -0.37
ABCA4P78363 AC079336.4-201ENST00000584219 408 ntTSL 2 BASIC12.76□□□□□ -0.37
ABCA4P78363 FBXL12-202ENST00000585379 956 ntTSL 2 BASIC12.76□□□□□ -0.37
ABCA4P78363 A1BG-AS1-204ENST00000595302 2130 ntTSL 2 BASIC12.76□□□□□ -0.37
ABCA4P78363 IFI27-215ENST00000621160 644 ntAPPRIS P2 TSL 1 (best) BASIC12.76□□□□□ -0.37
ABCA4P78363 SLC12A5-216ENST00000626701 617 ntTSL 3 BASIC12.76□□□□□ -0.37
ABCA4P78363 FLAD1-205ENST00000368431 1803 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
ABCA4P78363 NFE2-203ENST00000540264 1833 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
ABCA4P78363 NT5DC3-201ENST00000392876 7207 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
ABCA4P78363 TFAP2C-201ENST00000201031 2866 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
ABCA4P78363 EIF2B3-201ENST00000360403 1659 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
ABCA4P78363 AC006058.4-201ENST00000624016 1670 ntBASIC12.76□□□□□ -0.37
ABCA4P78363 SSH1-201ENST00000326470 2432 ntAPPRIS ALT2 TSL 2 BASIC12.76□□□□□ -0.37
ABCA4P78363 AL365203.3-201ENST00000609742 2057 ntBASIC12.76□□□□□ -0.37
ABCA4P78363 SPRY1-207ENST00000610581 2608 ntAPPRIS P1 TSL 3 BASIC12.76□□□□□ -0.37
ABCA4P78363 SOCS2-205ENST00000548537 3733 ntTSL 2 BASIC12.76□□□□□ -0.37
ABCA4P78363 API5-203ENST00000455725 2257 ntTSL 2 BASIC12.76□□□□□ -0.37
ABCA4P78363 OR6A2-201ENST00000332601 1373 ntAPPRIS P1 BASIC12.76□□□□□ -0.37
ABCA4P78363 IL6ST-209ENST00000502326 3007 ntAPPRIS P1 TSL 5 BASIC12.76□□□□□ -0.37
ABCA4P78363 EPS15L1-207ENST00000594975 2489 ntTSL 2 BASIC12.76□□□□□ -0.37
ABCA4P78363 CDK11B-208ENST00000629289 2490 ntTSL 5 BASIC12.76□□□□□ -0.37
ABCA4P78363 ACTL7B-201ENST00000374667 2379 ntAPPRIS P1 BASIC12.76□□□□□ -0.37
ABCA4P78363 TBC1D3J-201ENST00000620719 1426 ntBASIC12.76□□□□□ -0.37
ABCA4P78363 MAPK3-212ENST00000484663 2567 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
ABCA4P78363 DMTN-223ENST00000523782 2235 ntAPPRIS P1 TSL 5 BASIC12.76□□□□□ -0.37
ABCA4P78363 ADGRL1-201ENST00000340736 7853 ntAPPRIS ALT2 TSL 1 (best) BASIC12.76□□□□□ -0.37
ABCA4P78363 PBDC1-201ENST00000373357 977 ntTSL 2 BASIC12.76□□□□□ -0.37
ABCA4P78363 CIDEC-202ENST00000383817 1199 ntAPPRIS ALT1 TSL 1 (best) BASIC12.76□□□□□ -0.37
ABCA4P78363 SERF2-209ENST00000409646 559 ntTSL 4 BASIC12.76□□□□□ -0.37
ABCA4P78363 AC116609.2-201ENST00000431542 256 ntTSL 5 BASIC12.76□□□□□ -0.37
ABCA4P78363 AC019193.1-201ENST00000506678 823 ntBASIC12.76□□□□□ -0.37
ABCA4P78363 CADPS2-205ENST00000449022 4073 ntTSL 5 BASIC12.76□□□□□ -0.37
ABCA4P78363 CNOT8-201ENST00000285896 2528 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
ABCA4P78363 STAR-201ENST00000276449 1929 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
ABCA4P78363 JPH1-201ENST00000342232 4378 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
ABCA4P78363 WDR81-206ENST00000446363 2968 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
ABCA4P78363 KRT8P29-201ENST00000420409 1371 ntBASIC12.75□□□□□ -0.37
ABCA4P78363 FAM90A2P-201ENST00000511144 1395 ntBASIC12.75□□□□□ -0.37
ABCA4P78363 FAM90A25P-201ENST00000528404 1395 ntBASIC12.75□□□□□ -0.37
ABCA4P78363 AC010547.4-201ENST00000561754 1378 ntAPPRIS P1 TSL 5 BASIC12.75□□□□□ -0.37
ABCA4P78363 LETM2-205ENST00000519476 2240 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
ABCA4P78363 GRIN1-203ENST00000371550 3940 ntTSL 5 BASIC12.75□□□□□ -0.37
ABCA4P78363 POM121-203ENST00000434423 3750 ntAPPRIS ALT2 TSL 5 BASIC12.75□□□□□ -0.37
ABCA4P78363 ZNF219-203ENST00000451119 2918 ntAPPRIS P1 TSL 5 BASIC12.75□□□□□ -0.37
ABCA4P78363 RBM12-201ENST00000359646 5332 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
ABCA4P78363 NDRG2-206ENST00000397844 2096 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
ABCA4P78363 RAB2A-201ENST00000262646 3848 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
ABCA4P78363 ELFN1-201ENST00000424383 3845 ntAPPRIS P1 TSL 5 BASIC12.75□□□□□ -0.37
ABCA4P78363 NRSN2-210ENST00000621012 1852 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
ABCA4P78363 MYH14-203ENST00000425460 6811 ntAPPRIS P3 TSL 5 BASIC12.75□□□□□ -0.37
ABCA4P78363 TMEM41B-204ENST00000528080 3968 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
ABCA4P78363 SLC47A1-203ENST00000436810 1719 ntTSL 2 BASIC12.75□□□□□ -0.37
ABCA4P78363 CCDC120-202ENST00000496529 2415 ntAPPRIS P3 TSL 2 BASIC12.75□□□□□ -0.37
ABCA4P78363 GAS7-213ENST00000580865 2417 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
ABCA4P78363 HFE-203ENST00000336625 804 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
ABCA4P78363 AC005234.1-201ENST00000457851 434 ntTSL 3 BASIC12.75□□□□□ -0.37
ABCA4P78363 PGAP2-208ENST00000464229 863 ntTSL 3 BASIC12.75□□□□□ -0.37
ABCA4P78363 ZNF124-204ENST00000491356 956 ntTSL 2 BASIC12.75□□□□□ -0.37
ABCA4P78363 SCARNA21-201ENST00000517026 139 ntBASIC12.75□□□□□ -0.37
ABCA4P78363 ERICH5-202ENST00000545282 596 ntAPPRIS ALT2 TSL 2 BASIC12.75□□□□□ -0.37
ABCA4P78363 TUBB4A-212ENST00000601152 590 ntTSL 4 BASIC12.75□□□□□ -0.37
ABCA4P78363 AC008825.2-201ENST00000603374 718 ntBASIC12.75□□□□□ -0.37
ABCA4P78363 NAP1L6-202ENST00000641404 1222 ntBASIC12.75□□□□□ -0.37
ABCA4P78363 FLII-201ENST00000327031 4338 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
ABCA4P78363 ZNF7-202ENST00000446747 2242 ntAPPRIS ALT2 TSL 1 (best) BASIC12.75□□□□□ -0.37
ABCA4P78363 CRLF2-201ENST00000381566 1545 ntAPPRIS P1 TSL 5 BASIC12.75□□□□□ -0.37
ABCA4P78363 RIC1-201ENST00000251879 4127 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
ABCA4P78363 SLC1A5-201ENST00000412532 1750 ntTSL 2 BASIC12.75□□□□□ -0.37
ABCA4P78363 AL022326.1-201ENST00000434516 1778 ntTSL 2 BASIC12.75□□□□□ -0.37
ABCA4P78363 FAM69C-202ENST00000400291 1329 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
ABCA4P78363 PARP9-204ENST00000471785 3040 ntAPPRIS ALT2 TSL 2 BASIC12.75□□□□□ -0.37
ABCA4P78363 TRIO-202ENST00000344204 11100 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
ABCA4P78363 VPS16-203ENST00000380469 2318 ntTSL 2 BASIC12.75□□□□□ -0.37
Retrieved 100 of 98,524 protein–RNA pairs in 31.4 ms