Protein–RNA interactions for Protein: P61011

SRP54, Signal recognition particle 54 kDa protein, humanhuman

Known RBP Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54P61011 CSHL1-203ENST00000346606 659 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
SRP54P61011 TMEM52-203ENST00000378602 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC14.68□□□□□ -0.06
SRP54P61011 ERBB3-202ENST00000411731 1027 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
SRP54P61011 BX284668.4-201ENST00000453917 508 ntBASIC14.68□□□□□ -0.06
SRP54P61011 NME2-204ENST00000503064 749 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
SRP54P61011 SPATA24-205ENST00000509959 641 ntTSL 5 BASIC14.68□□□□□ -0.06
SRP54P61011 AC044849.1-201ENST00000519737 1188 ntBASIC14.68□□□□□ -0.06
SRP54P61011 CD63-214ENST00000552692 949 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
SRP54P61011 AF111169.4-201ENST00000556368 749 ntTSL 2 BASIC14.68□□□□□ -0.06
SRP54P61011 IGHV3OR16-16-201ENST00000563644 343 ntBASIC14.68□□□□□ -0.06
SRP54P61011 C15orf40-211ENST00000565712 559 ntTSL 3 BASIC14.68□□□□□ -0.06
SRP54P61011 SSTR5-AS1-201ENST00000565992 575 ntTSL 4 BASIC14.68□□□□□ -0.06
SRP54P61011 AC093525.1-201ENST00000569317 596 ntAPPRIS P1 TSL 3 BASIC14.68□□□□□ -0.06
SRP54P61011 AC022903.1-201ENST00000579327 469 ntTSL 2 BASIC14.68□□□□□ -0.06
SRP54P61011 AL445288.1-201ENST00000610846 654 ntTSL 4 BASIC14.68□□□□□ -0.06
SRP54P61011 UBXN1-218ENST00000616865 1002 ntTSL 5 BASIC14.68□□□□□ -0.06
SRP54P61011 CELP-203ENST00000624767 2414 ntTSL 5 BASIC14.68□□□□□ -0.06
SRP54P61011 KAT5-202ENST00000352980 2059 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
SRP54P61011 SHC1P1-201ENST00000425230 1745 ntBASIC14.68□□□□□ -0.06
SRP54P61011 CEP164-201ENST00000278935 5630 ntAPPRIS P2 TSL 1 (best) BASIC14.68□□□□□ -0.06
SRP54P61011 SLC18A2-201ENST00000298472 3852 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
SRP54P61011 MBD1-205ENST00000353909 2820 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
SRP54P61011 SMURF2-201ENST00000262435 2918 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
SRP54P61011 TRAK1-208ENST00000484786 2008 ntTSL 5 BASIC14.68□□□□□ -0.06
SRP54P61011 TUB-AS1-201ENST00000506601 2021 ntTSL 2 BASIC14.68□□□□□ -0.06
SRP54P61011 LMNA-201ENST00000347559 3137 ntTSL 5 BASIC14.68□□□□□ -0.06
SRP54P61011 KIAA1468-201ENST00000256858 5579 ntAPPRIS P1 TSL 5 BASIC14.68□□□□□ -0.06
SRP54P61011 TSC22D3-201ENST00000315660 2213 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
SRP54P61011 ATP6V0A1-204ENST00000537728 2774 ntTSL 2 BASIC14.68□□□□□ -0.06
SRP54P61011 SALL4P5-201ENST00000419001 1760 ntBASIC14.68□□□□□ -0.06
SRP54P61011 CYB561D1-204ENST00000420578 3326 ntAPPRIS P3 TSL 1 (best) BASIC14.68□□□□□ -0.06
SRP54P61011 HILPDA-201ENST00000257696 1349 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
SRP54P61011 INTS14-204ENST00000442903 1863 ntTSL 2 BASIC14.67□□□□□ -0.06
SRP54P61011 ADHFE1-203ENST00000396623 1990 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
SRP54P61011 MBTD1-201ENST00000376381 1420 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
SRP54P61011 CNPPD1-202ENST00000409789 2073 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
SRP54P61011 PDHB-206ENST00000474765 1503 ntTSL 5 BASIC14.67□□□□□ -0.06
SRP54P61011 MAPKAP1-201ENST00000265960 3395 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
SRP54P61011 DIAPH2-204ENST00000373054 3376 ntAPPRIS ALT2 TSL 5 BASIC14.67□□□□□ -0.06
SRP54P61011 CAPN2-201ENST00000295006 3573 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
SRP54P61011 PITPNB-202ENST00000335272 2926 ntAPPRIS P3 TSL 1 (best) BASIC14.67□□□□□ -0.06
SRP54P61011 FAM219A-206ENST00000379087 3573 ntAPPRIS ALT1 TSL 4 BASIC14.67□□□□□ -0.06
SRP54P61011 HSPA4L-204ENST00000508776 3020 ntAPPRIS P1 TSL 2 BASIC14.67□□□□□ -0.06
SRP54P61011 XPO6-201ENST00000304658 4422 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
SRP54P61011 PEX11B-201ENST00000369306 1740 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
SRP54P61011 LINC00900-201ENST00000499809 3322 ntTSL 2 BASIC14.67□□□□□ -0.06
SRP54P61011 IL1RN-203ENST00000361779 1922 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
SRP54P61011 KLC4-204ENST00000453940 1945 ntTSL 2 BASIC14.67□□□□□ -0.06
SRP54P61011 AC138035.3-201ENST00000622706 2791 ntBASIC14.67□□□□□ -0.06
SRP54P61011 ZNF208-205ENST00000601773 2027 ntTSL 2 BASIC14.67□□□□□ -0.06
SRP54P61011 MAGEA2-209ENST00000623806 2025 ntAPPRIS P1 TSL 2 BASIC14.67□□□□□ -0.06
SRP54P61011 FIS1-201ENST00000223136 734 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
SRP54P61011 CALCA-201ENST00000331587 843 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
SRP54P61011 TPD52L2-207ENST00000369927 1094 ntTSL 4 BASIC14.67□□□□□ -0.06
SRP54P61011 FGF14-202ENST00000376143 744 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
SRP54P61011 PSME1-202ENST00000382708 1136 ntTSL 2 BASIC14.67□□□□□ -0.06
SRP54P61011 SUMO1-204ENST00000409181 784 ntTSL 3 BASIC14.67□□□□□ -0.06
SRP54P61011 SUMO1-207ENST00000409498 779 ntTSL 3 BASIC14.67□□□□□ -0.06
SRP54P61011 LINC02158-201ENST00000432377 897 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
SRP54P61011 NKAIN1P1-201ENST00000435754 582 ntBASIC14.67□□□□□ -0.06
SRP54P61011 TRA2B-205ENST00000453386 2952 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
SRP54P61011 ZNF302-207ENST00000505365 2955 ntTSL 2 BASIC14.67□□□□□ -0.06
SRP54P61011 FAM153B-214ENST00000512862 1071 ntAPPRIS ALT2 TSL 2 BASIC14.67□□□□□ -0.06
SRP54P61011 AP001007.1-201ENST00000526796 645 ntTSL 2 BASIC14.67□□□□□ -0.06
SRP54P61011 AL133523.1-201ENST00000554537 331 ntTSL 3 BASIC14.67□□□□□ -0.06
SRP54P61011 PIGH-209ENST00000559581 1049 ntTSL 4 BASIC14.67□□□□□ -0.06
SRP54P61011 AC100827.2-201ENST00000563214 1194 ntBASIC14.67□□□□□ -0.06
SRP54P61011 MLLT10-216ENST00000621220 381 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
SRP54P61011 MCL1-202ENST00000369026 3932 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
SRP54P61011 SLC35C2-204ENST00000372230 2246 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
SRP54P61011 RAI2-204ENST00000451717 2224 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
SRP54P61011 SLC4A7-212ENST00000446700 4000 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
SRP54P61011 POP4-201ENST00000221770 2321 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
SRP54P61011 DGKZ-205ENST00000456247 3482 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
SRP54P61011 SLC1A5-201ENST00000412532 1750 ntTSL 2 BASIC14.67□□□□□ -0.06
SRP54P61011 STAMBPL1-204ENST00000371927 4184 ntTSL 2 BASIC14.67□□□□□ -0.06
SRP54P61011 BRF1-203ENST00000379937 3314 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
SRP54P61011 LHFPL4-201ENST00000287585 4880 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
SRP54P61011 PTGES3L-AARSD1-204ENST00000421990 2150 ntAPPRIS P1 TSL 2 BASIC14.67□□□□□ -0.06
SRP54P61011 DZIP1-204ENST00000376829 3738 ntAPPRIS P4 TSL 1 (best) BASIC14.67□□□□□ -0.06
SRP54P61011 MARC1-201ENST00000366910 7439 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
SRP54P61011 KIAA1755-206ENST00000496900 2557 ntAPPRIS ALT2 TSL 2 BASIC14.67□□□□□ -0.06
SRP54P61011 UVSSA-206ENST00000507531 2597 ntAPPRIS P2 TSL 1 (best) BASIC14.67□□□□□ -0.06
SRP54P61011 ZNF563-201ENST00000293725 2754 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
SRP54P61011 RSBN1-204ENST00000612242 6592 ntAPPRIS P1 TSL 2 BASIC14.67□□□□□ -0.06
SRP54P61011 ECSIT-209ENST00000591104 1319 ntAPPRIS ALT2 TSL 1 (best) BASIC14.66□□□□□ -0.06
SRP54P61011 ZNF365-205ENST00000395254 4173 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
SRP54P61011 GSDMA-203ENST00000635792 1546 ntAPPRIS P1 TSL 5 BASIC14.66□□□□□ -0.06
SRP54P61011 CBS-204ENST00000398165 2605 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
SRP54P61011 STAT1-202ENST00000392322 2716 ntAPPRIS ALT1 TSL 1 (best) BASIC14.66□□□□□ -0.06
SRP54P61011 SLC35A3-221ENST00000640600 3341 ntTSL 5 BASIC14.66□□□□□ -0.06
SRP54P61011 TMEM41B-204ENST00000528080 3968 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
SRP54P61011 ZNF662-201ENST00000328199 3186 ntAPPRIS P1 TSL 5 BASIC14.66□□□□□ -0.06
SRP54P61011 TMEM92-201ENST00000300433 2767 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
SRP54P61011 KRBOX4-202ENST00000344302 2774 ntAPPRIS ALT2 TSL 2 BASIC14.66□□□□□ -0.06
SRP54P61011 TLE3-202ENST00000440567 2657 ntTSL 2 BASIC14.66□□□□□ -0.06
SRP54P61011 FSD2-202ENST00000541889 2356 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
SRP54P61011 PPT1-215ENST00000641471 2368 ntBASIC14.66□□□□□ -0.06
SRP54P61011 RNF8-202ENST00000373479 5631 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
SRP54P61011 PTPRO-201ENST00000281171 5301 ntAPPRIS P3 TSL 1 (best) BASIC14.66□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 55.7 ms