Protein–RNA interactions for Protein: P58872

RHBDL3, Rhomboid-related protein 3, humanhuman

Predictions only

Length 404 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RHBDL3P58872 UPK1B-205ENST00000497685 981 ntTSL 2 BASIC17.31■□□□□ 0.36
RHBDL3P58872 NDUFC1-209ENST00000539002 1198 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
RHBDL3P58872 NDUFC1-211ENST00000544855 1257 ntAPPRIS P1 TSL 3 BASIC17.31■□□□□ 0.36
RHBDL3P58872 AC025154.2-201ENST00000550530 445 ntTSL 3 BASIC17.31■□□□□ 0.36
RHBDL3P58872 FOS-204ENST00000554617 796 ntTSL 2 BASIC17.31■□□□□ 0.36
RHBDL3P58872 GHRHR-212ENST00000611037 923 ntTSL 5 BASIC17.31■□□□□ 0.36
RHBDL3P58872 LINC00923-205ENST00000615399 932 ntTSL 5 BASIC17.31■□□□□ 0.36
RHBDL3P58872 AC009560.1-201ENST00000620208 434 ntBASIC17.31■□□□□ 0.36
RHBDL3P58872 AL805961.1-201ENST00000642026 753 ntBASIC17.31■□□□□ 0.36
RHBDL3P58872 NIPAL3-202ENST00000339255 1676 ntTSL 5 BASIC17.31■□□□□ 0.36
RHBDL3P58872 LIMS2-209ENST00000410038 1695 ntTSL 2 BASIC17.31■□□□□ 0.36
RHBDL3P58872 AC109466.1-209ENST00000486913 1618 ntTSL 2 BASIC17.31■□□□□ 0.36
RHBDL3P58872 AC004922.1-201ENST00000638617 2430 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
RHBDL3P58872 TRAF3IP1-202ENST00000391993 4003 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
RHBDL3P58872 LINC02395-201ENST00000546821 3157 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
RHBDL3P58872 CDCP2-201ENST00000371330 2723 ntAPPRIS P2 TSL 2 BASIC17.31■□□□□ 0.36
RHBDL3P58872 HNF1A-215ENST00000615446 2344 ntTSL 5 BASIC17.31■□□□□ 0.36
RHBDL3P58872 UNC119B-201ENST00000344651 4404 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
RHBDL3P58872 PLA1A-204ENST00000488919 1456 ntTSL 2 BASIC17.31■□□□□ 0.36
RHBDL3P58872 LINC01229-201ENST00000561510 1494 ntTSL 5 BASIC17.31■□□□□ 0.36
RHBDL3P58872 CSTB-201ENST00000291568 2164 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
RHBDL3P58872 ZNF586-203ENST00000396154 2163 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
RHBDL3P58872 OXA1L-202ENST00000358043 1750 ntTSL 2 BASIC17.3■□□□□ 0.36
RHBDL3P58872 ZNF165-201ENST00000377325 2107 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
RHBDL3P58872 BAX-201ENST00000293288 1358 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
RHBDL3P58872 TUBA3C-202ENST00000618094 1386 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
RHBDL3P58872 TBPL2-201ENST00000247219 2037 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
RHBDL3P58872 TMEM263-201ENST00000280756 3362 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
RHBDL3P58872 ACTG1P17-202ENST00000560958 1662 ntTSL 2 BASIC17.3■□□□□ 0.36
RHBDL3P58872 MTMR9-202ENST00000526292 1960 ntTSL 2 BASIC17.3■□□□□ 0.36
RHBDL3P58872 DUOXA1-210ENST00000559014 1965 ntTSL 2 BASIC17.3■□□□□ 0.36
RHBDL3P58872 RPH3AL-202ENST00000331302 2606 ntAPPRIS P2 TSL 2 BASIC17.3■□□□□ 0.36
RHBDL3P58872 NAA60-203ENST00000414063 2619 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
RHBDL3P58872 ISCA2-204ENST00000556816 2626 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
RHBDL3P58872 CPEB2-204ENST00000382401 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
RHBDL3P58872 RNF25-201ENST00000295704 1914 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
RHBDL3P58872 TMUB2-212ENST00000589785 1918 ntAPPRIS P3 TSL 2 BASIC17.3■□□□□ 0.36
RHBDL3P58872 CBWD5-204ENST00000377392 2863 ntTSL 2 BASIC17.3■□□□□ 0.36
RHBDL3P58872 HFE-201ENST00000309234 1158 ntAPPRIS ALT2 TSL 2 BASIC17.3■□□□□ 0.36
RHBDL3P58872 CD1E-202ENST00000368155 696 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
RHBDL3P58872 CD1E-204ENST00000368157 399 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
RHBDL3P58872 SAPCD1-208ENST00000415669 916 ntAPPRIS P2 TSL 1 (best) BASIC17.3■□□□□ 0.36
RHBDL3P58872 AL589843.1-201ENST00000423924 425 ntTSL 2 BASIC17.3■□□□□ 0.36
RHBDL3P58872 AC254562.2-201ENST00000428786 667 ntTSL 3 BASIC17.3■□□□□ 0.36
RHBDL3P58872 HVCN1-203ENST00000439744 1215 ntTSL 2 BASIC17.3■□□□□ 0.36
RHBDL3P58872 DUX4L50-201ENST00000455245 715 ntBASIC17.3■□□□□ 0.36
RHBDL3P58872 AP000358.1-201ENST00000456260 156 ntBASIC17.3■□□□□ 0.36
RHBDL3P58872 RN7SL181P-201ENST00000462921 277 ntBASIC17.3■□□□□ 0.36
RHBDL3P58872 PPFIBP1-204ENST00000535047 875 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
RHBDL3P58872 IQSEC3P1-201ENST00000538799 536 ntBASIC17.3■□□□□ 0.36
RHBDL3P58872 AC093752.3-201ENST00000567343 901 ntBASIC17.3■□□□□ 0.36
RHBDL3P58872 EXOSC5-204ENST00000596905 826 ntTSL 2 BASIC17.3■□□□□ 0.36
RHBDL3P58872 PRAMEF8-202ENST00000614831 1592 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
RHBDL3P58872 PRAMEF7-202ENST00000616979 1592 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
RHBDL3P58872 AMHR2-201ENST00000257863 1863 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
RHBDL3P58872 ERG-207ENST00000398919 1868 ntAPPRIS ALT1 TSL 1 (best) BASIC17.3■□□□□ 0.36
RHBDL3P58872 SIN3A-203ENST00000394949 4930 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
RHBDL3P58872 LINGO1-201ENST00000355300 3055 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
RHBDL3P58872 USP35-204ENST00000530267 2419 ntTSL 2 BASIC17.3■□□□□ 0.36
RHBDL3P58872 AL513477.1-201ENST00000602865 2407 ntBASIC17.3■□□□□ 0.36
RHBDL3P58872 GLIPR1L2-204ENST00000550916 2609 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
RHBDL3P58872 NCOA6-206ENST00000612493 4082 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
RHBDL3P58872 KANK1-204ENST00000382293 5249 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
RHBDL3P58872 SLC6A13-203ENST00000445055 1950 ntTSL 2 BASIC17.29■□□□□ 0.36
RHBDL3P58872 GHDC-203ENST00000428494 2518 ntTSL 5 BASIC17.29■□□□□ 0.36
RHBDL3P58872 NEDD4L-202ENST00000356462 3335 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
RHBDL3P58872 NEO1-207ENST00000560262 4315 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
RHBDL3P58872 ALDOA-228ENST00000627059 2402 ntAPPRIS ALT1 TSL 5 BASIC17.29■□□□□ 0.36
RHBDL3P58872 PLPPR4-203ENST00000457765 4846 ntTSL 2 BASIC17.29■□□□□ 0.36
RHBDL3P58872 MYADML-201ENST00000474610 2147 ntBASIC17.29■□□□□ 0.36
RHBDL3P58872 MTHFR-210ENST00000641407 2387 ntBASIC17.29■□□□□ 0.36
RHBDL3P58872 TMEM230-202ENST00000342308 1562 ntTSL 2 BASIC17.29■□□□□ 0.36
RHBDL3P58872 CYP4F11-202ENST00000326742 2877 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
RHBDL3P58872 SLC18A2-201ENST00000298472 3852 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
RHBDL3P58872 PKD2L2-205ENST00000508638 2333 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
RHBDL3P58872 NPFF-201ENST00000267017 592 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
RHBDL3P58872 CASK-202ENST00000378158 3848 ntTSL 5 BASIC17.29■□□□□ 0.36
RHBDL3P58872 IGHV3-48-201ENST00000390624 432 ntAPPRIS P1 BASIC17.29■□□□□ 0.36
RHBDL3P58872 AL583805.1-201ENST00000391389 531 ntBASIC17.29■□□□□ 0.36
RHBDL3P58872 DUTP3-201ENST00000450025 415 ntBASIC17.29■□□□□ 0.36
RHBDL3P58872 LINC00461-207ENST00000506978 564 ntTSL 5 BASIC17.29■□□□□ 0.36
RHBDL3P58872 CD164-210ENST00000512821 964 ntTSL 2 BASIC17.29■□□□□ 0.36
RHBDL3P58872 BHMT-206ENST00000524080 1207 ntTSL 2 BASIC17.29■□□□□ 0.36
RHBDL3P58872 TMEM223-202ENST00000525631 736 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
RHBDL3P58872 DYRK1B-208ENST00000601972 772 ntTSL 2 BASIC17.29■□□□□ 0.36
RHBDL3P58872 AC092171.5-201ENST00000608012 942 ntBASIC17.29■□□□□ 0.36
RHBDL3P58872 MIR6842-201ENST00000612539 65 ntBASIC17.29■□□□□ 0.36
RHBDL3P58872 KRTAP10-4-203ENST00000622352 1244 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
RHBDL3P58872 CMC2-224ENST00000630396 481 ntTSL 5 BASIC17.29■□□□□ 0.36
RHBDL3P58872 ELF3-202ENST00000367283 2044 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
RHBDL3P58872 PLAT-205ENST00000519510 2030 ntTSL 5 BASIC17.29■□□□□ 0.36
RHBDL3P58872 MEGF6-201ENST00000294599 4501 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
RHBDL3P58872 CICP14-201ENST00000629111 2732 ntBASIC17.29■□□□□ 0.36
RHBDL3P58872 PPT1-205ENST00000449045 1957 ntTSL 2 BASIC17.29■□□□□ 0.36
RHBDL3P58872 C2CD4A-201ENST00000355522 3445 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
RHBDL3P58872 ABI2-215ENST00000430418 1676 ntTSL 5 BASIC17.29■□□□□ 0.36
RHBDL3P58872 ABLIM2-209ENST00000505872 1680 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
RHBDL3P58872 DNAJA1-201ENST00000330899 2381 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
RHBDL3P58872 CCDC197-206ENST00000640978 1429 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
RHBDL3P58872 EFHC1-227ENST00000637089 2133 ntTSL 5 BASIC17.29■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 53.7 ms