Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 AC112484.1-201ENST00000508239 2291 ntAPPRIS P5 TSL 2 BASIC24.02■■□□□ 1.44
CUX1P39880 ARL1-202ENST00000536227 1322 ntTSL 2 BASIC24.02■■□□□ 1.44
CUX1P39880 FAM184A-201ENST00000338891 4141 ntAPPRIS P4 TSL 1 (best) BASIC24.02■■□□□ 1.44
CUX1P39880 NFIX-202ENST00000360105 5459 ntTSL 5 BASIC24.02■■□□□ 1.44
CUX1P39880 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
CUX1P39880 PJA1-201ENST00000361478 2755 ntAPPRIS P4 TSL 1 (best) BASIC24.02■■□□□ 1.44
CUX1P39880 SARS-202ENST00000369923 1882 ntTSL 5 BASIC24.02■■□□□ 1.44
CUX1P39880 SGO1-AS1-201ENST00000441442 499 ntTSL 4 BASIC24.02■■□□□ 1.44
CUX1P39880 FKBP1B-205ENST00000452109 953 ntTSL 3 BASIC24.02■■□□□ 1.44
CUX1P39880 EEF1GP8-201ENST00000506566 1154 ntBASIC24.02■■□□□ 1.44
CUX1P39880 CYB561A3-208ENST00000536915 1094 ntAPPRIS P1 TSL 2 BASIC24.02■■□□□ 1.44
CUX1P39880 AC023968.2-201ENST00000560593 1049 ntBASIC24.02■■□□□ 1.44
CUX1P39880 AP005212.2-201ENST00000584979 510 ntBASIC24.02■■□□□ 1.44
CUX1P39880 AC004528.1-201ENST00000588380 641 ntTSL 5 BASIC24.02■■□□□ 1.44
CUX1P39880 ARHGAP45-212ENST00000590577 3218 ntTSL 2 BASIC24.02■■□□□ 1.44
CUX1P39880 Metazoa_SRP.157-201ENST00000622819 262 ntBASIC24.02■■□□□ 1.44
CUX1P39880 AL365181.1-201ENST00000564032 1828 ntBASIC24.02■■□□□ 1.44
CUX1P39880 CCL5-201ENST00000603197 1365 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
CUX1P39880 NAIF1-201ENST00000373078 3399 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
CUX1P39880 TBC1D3G-201ENST00000569055 2065 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
CUX1P39880 TBC1D3H-201ENST00000610350 2065 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
CUX1P39880 TBC1D3L-202ENST00000617678 2065 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
CUX1P39880 OPN5-204ENST00000489301 1931 ntAPPRIS ALT2 TSL 5 BASIC24.02■■□□□ 1.44
CUX1P39880 NBAT1-201ENST00000566912 1940 ntTSL 2 BASIC24.02■■□□□ 1.44
CUX1P39880 PAIP2-201ENST00000265192 1459 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
CUX1P39880 COQ8B-202ENST00000324464 2443 ntAPPRIS P3 TSL 1 (best) BASIC24.01■■□□□ 1.43
CUX1P39880 FIGNL2-201ENST00000564840 4693 ntAPPRIS P1 TSL 5 BASIC24.01■■□□□ 1.43
CUX1P39880 HM13-201ENST00000335574 1809 ntTSL 1 (best) BASIC24.01■■□□□ 1.43
CUX1P39880 VIPAS39-208ENST00000556412 1832 ntTSL 2 BASIC24.01■■□□□ 1.43
CUX1P39880 ASAH1-249ENST00000637528 2215 ntTSL 5 BASIC24.01■■□□□ 1.43
CUX1P39880 AL357373.1-201ENST00000394974 322 ntBASIC24.01■■□□□ 1.43
CUX1P39880 AC012506.1-201ENST00000423706 525 ntTSL 4 BASIC24.01■■□□□ 1.43
CUX1P39880 PRSS3P1-201ENST00000503996 742 ntBASIC24.01■■□□□ 1.43
CUX1P39880 MIR4265-201ENST00000582152 99 ntBASIC24.01■■□□□ 1.43
CUX1P39880 AP000769.1-203ENST00000637245 208 ntBASIC24.01■■□□□ 1.43
CUX1P39880 SVOPL-203ENST00000421622 1653 ntTSL 5 BASIC24.01■■□□□ 1.43
CUX1P39880 REC8-209ENST00000611366 2331 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
CUX1P39880 COQ4-201ENST00000300452 1548 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
CUX1P39880 FAM168A-202ENST00000356467 1767 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
CUX1P39880 BBS1-202ENST00000393994 1790 ntTSL 1 (best) BASIC24.01■■□□□ 1.43
CUX1P39880 GLIS1-201ENST00000312233 2812 ntAPPRIS P2 TSL 2 BASIC24.01■■□□□ 1.43
CUX1P39880 GLIS1-202ENST00000628545 2807 ntAPPRIS ALT2 TSL 5 BASIC24.01■■□□□ 1.43
CUX1P39880 NCF4-202ENST00000397147 1641 ntTSL 1 (best) BASIC24.01■■□□□ 1.43
CUX1P39880 ARNT2-209ENST00000622346 2932 ntTSL 2 BASIC24.01■■□□□ 1.43
CUX1P39880 LINC01662-201ENST00000342888 1859 ntTSL 2 BASIC24.01■■□□□ 1.43
CUX1P39880 VAC14-AS1-201ENST00000398177 2145 ntTSL 2 BASIC24.01■■□□□ 1.43
CUX1P39880 HNRNPLL-212ENST00000608859 3035 ntTSL 5 BASIC24.01■■□□□ 1.43
CUX1P39880 ATAT1-206ENST00000376485 1476 ntAPPRIS ALT1 TSL 5 BASIC24.01■■□□□ 1.43
CUX1P39880 ZNF114-204ENST00000595607 2478 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
CUX1P39880 SLC35A3-205ENST00000465289 5696 ntAPPRIS P1 TSL 5 BASIC24.01■■□□□ 1.43
CUX1P39880 ATP5A1-201ENST00000282050 1945 ntAPPRIS P1 TSL 5 BASIC24.01■■□□□ 1.43
CUX1P39880 WDR13-202ENST00000376729 5469 ntAPPRIS P1 TSL 5 BASIC24■■□□□ 1.43
CUX1P39880 LINC01648-201ENST00000445180 1519 ntTSL 1 (best) BASIC24■■□□□ 1.43
CUX1P39880 AC073210.1-201ENST00000414799 232 ntBASIC24■■□□□ 1.43
CUX1P39880 HLA-DPA2-205ENST00000433582 733 ntBASIC24■■□□□ 1.43
CUX1P39880 KCNK16-204ENST00000437525 981 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
CUX1P39880 C21orf62-204ENST00000490358 1155 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
CUX1P39880 AL132801.1-201ENST00000559675 567 ntTSL 4 BASIC24■■□□□ 1.43
CUX1P39880 APOC1-209ENST00000592885 562 ntTSL 3 BASIC24■■□□□ 1.43
CUX1P39880 COQ4-204ENST00000608951 781 ntTSL 2 BASIC24■■□□□ 1.43
CUX1P39880 IQSEC2-207ENST00000638583 722 ntTSL 5 BASIC24■■□□□ 1.43
CUX1P39880 PNMA1-201ENST00000316836 2590 ntAPPRIS P1 BASIC24■■□□□ 1.43
CUX1P39880 MAPK8IP2-202ENST00000329492 3381 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
CUX1P39880 EML2-203ENST00000536630 2791 ntAPPRIS ALT2 TSL 2 BASIC24■■□□□ 1.43
CUX1P39880 NPHP3-AS1-201ENST00000489343 2957 ntTSL 1 (best) BASIC24■■□□□ 1.43
CUX1P39880 AL928654.2-201ENST00000551271 2279 ntTSL 3 BASIC24■■□□□ 1.43
CUX1P39880 MAPK8IP1-202ENST00000395629 3180 ntTSL 5 BASIC24■■□□□ 1.43
CUX1P39880 AC133785.1-201ENST00000429282 2824 ntTSL 2 BASIC24■■□□□ 1.43
CUX1P39880 LBX1-201ENST00000370193 2900 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
CUX1P39880 DNAI1-209ENST00000614641 2598 ntAPPRIS ALT2 TSL 5 BASIC24■■□□□ 1.43
CUX1P39880 CDK18-201ENST00000360066 3141 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
CUX1P39880 CNBP-205ENST00000500450 1516 ntTSL 2 BASIC24■■□□□ 1.43
CUX1P39880 PRNP-203ENST00000430350 2539 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
CUX1P39880 NAA60-205ENST00000424546 1149 ntTSL 2 BASIC24■■□□□ 1.43
CUX1P39880 HNRNPA1P2-207ENST00000432375 960 ntBASIC24■■□□□ 1.43
CUX1P39880 HORMAD2-AS1-202ENST00000432568 727 ntTSL 3 BASIC24■■□□□ 1.43
CUX1P39880 AC107464.2-201ENST00000502923 569 ntTSL 2 BASIC24■■□□□ 1.43
CUX1P39880 AC015712.5-201ENST00000558568 564 ntTSL 2 BASIC24■■□□□ 1.43
CUX1P39880 AL136982.5-201ENST00000605222 294 ntBASIC24■■□□□ 1.43
CUX1P39880 PLS3-210ENST00000626746 216 ntTSL 4 BASIC24■■□□□ 1.43
CUX1P39880 CADPS-201ENST00000283269 4591 ntAPPRIS P4 TSL 1 (best) BASIC23.99■■□□□ 1.43
CUX1P39880 MYO9A-214ENST00000566885 5111 ntTSL 1 (best) BASIC23.99■■□□□ 1.43
CUX1P39880 AC093525.2-201ENST00000564543 1944 ntAPPRIS P1 TSL 2 BASIC23.99■■□□□ 1.43
CUX1P39880 KLC1-212ENST00000553286 3135 ntTSL 5 BASIC23.99■■□□□ 1.43
CUX1P39880 AGPAT1-201ENST00000336984 2021 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
CUX1P39880 AGPAT1-202ENST00000375104 2017 ntAPPRIS P1 TSL 2 BASIC23.99■■□□□ 1.43
CUX1P39880 ATP6V1C1-202ENST00000518738 2130 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
CUX1P39880 SAP130-202ENST00000259235 4065 ntTSL 1 (best) BASIC23.99■■□□□ 1.43
CUX1P39880 NRBP1-201ENST00000233557 2887 ntAPPRIS P1 TSL 2 BASIC23.99■■□□□ 1.43
CUX1P39880 CHI3L1-201ENST00000255409 1792 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
CUX1P39880 ALOX12B-201ENST00000319144 2502 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
CUX1P39880 COBLL1-201ENST00000342193 4898 ntAPPRIS P3 TSL 1 (best) BASIC23.99■■□□□ 1.43
CUX1P39880 GATA4-206ENST00000528712 2614 ntTSL 2 BASIC23.99■■□□□ 1.43
CUX1P39880 FNDC5-201ENST00000373471 2732 ntAPPRIS ALT2 TSL 2 BASIC23.99■■□□□ 1.43
CUX1P39880 PSMC4-202ENST00000455878 1333 ntTSL 1 (best) BASIC23.99■■□□□ 1.43
CUX1P39880 RBFOX1-205ENST00000436368 1530 ntTSL 1 (best) BASIC23.99■■□□□ 1.43
CUX1P39880 ZFAND5-204ENST00000376960 2686 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
CUX1P39880 GNG4-202ENST00000366598 1721 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
CUX1P39880 AC215219.1-201ENST00000400706 1817 ntBASIC23.99■■□□□ 1.43
CUX1P39880 TBCE-202ENST00000406207 2012 ntAPPRIS P3 TSL 5 BASIC23.99■■□□□ 1.43
Retrieved 100 of 98,524 protein–RNA pairs in 49.4 ms