Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 SEC61B-203ENST00000498603 587 ntTSL 3 BASIC17.36■□□□□ 0.37
BRCA1P38398 TPP1-209ENST00000528657 578 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
BRCA1P38398 AP003040.1-201ENST00000532044 1024 ntBASIC17.36■□□□□ 0.37
BRCA1P38398 SLC25A3-215ENST00000551265 580 ntTSL 4 BASIC17.36■□□□□ 0.37
BRCA1P38398 MYMX-201ENST00000573382 817 ntAPPRIS P1 TSL 5 BASIC17.36■□□□□ 0.37
BRCA1P38398 MIR4265-201ENST00000582152 99 ntBASIC17.36■□□□□ 0.37
BRCA1P38398 PARVG-205ENST00000422871 3462 ntAPPRIS P1 TSL 5 BASIC17.36■□□□□ 0.37
BRCA1P38398 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
BRCA1P38398 HNF4A-206ENST00000457232 1339 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
BRCA1P38398 AC007495.1-201ENST00000501259 2678 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
BRCA1P38398 YAP1-210ENST00000615667 5398 ntAPPRIS ALT2 TSL 5 BASIC17.36■□□□□ 0.37
BRCA1P38398 FAM214B-206ENST00000603301 3256 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
BRCA1P38398 MGME1-202ENST00000377709 1936 ntTSL 2 BASIC17.36■□□□□ 0.37
BRCA1P38398 EPS8L2-218ENST00000530636 2469 ntAPPRIS P2 TSL 1 (best) BASIC17.36■□□□□ 0.37
BRCA1P38398 CDC42BPB-201ENST00000361246 6758 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
BRCA1P38398 PPFIA1-201ENST00000253925 5234 ntAPPRIS P4 TSL 1 (best) BASIC17.36■□□□□ 0.37
BRCA1P38398 LDB3-204ENST00000372066 1598 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
BRCA1P38398 SPRY1-207ENST00000610581 2608 ntAPPRIS P1 TSL 3 BASIC17.36■□□□□ 0.37
BRCA1P38398 ZNF707-223ENST00000532205 2865 ntAPPRIS P1 TSL 2 BASIC17.36■□□□□ 0.37
BRCA1P38398 AP001781.3-201ENST00000622211 2939 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
BRCA1P38398 CYP1B1-AS1-201ENST00000413828 1781 ntTSL 5 BASIC17.35■□□□□ 0.37
BRCA1P38398 TPD52L2-201ENST00000217121 2362 ntTSL 2 BASIC17.35■□□□□ 0.37
BRCA1P38398 SLC44A1-203ENST00000374724 3088 ntAPPRIS ALT1 TSL 5 BASIC17.35■□□□□ 0.37
BRCA1P38398 FCN2-202ENST00000350339 943 ntAPPRIS ALT2 TSL 5 BASIC17.35■□□□□ 0.37
BRCA1P38398 RNA5SP491-201ENST00000362936 118 ntBASIC17.35■□□□□ 0.37
BRCA1P38398 KRTAP10-9-201ENST00000397911 1171 ntAPPRIS P2 BASIC17.35■□□□□ 0.37
BRCA1P38398 ACTBP14-201ENST00000411655 1089 ntBASIC17.35■□□□□ 0.37
BRCA1P38398 SF3B1-204ENST00000414963 651 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
BRCA1P38398 RPSAP6-201ENST00000417882 882 ntBASIC17.35■□□□□ 0.37
BRCA1P38398 Z82188.2-201ENST00000419128 630 ntTSL 5 BASIC17.35■□□□□ 0.37
BRCA1P38398 AL137244.1-201ENST00000422931 865 ntBASIC17.35■□□□□ 0.37
BRCA1P38398 RPL18AP16-201ENST00000424057 531 ntBASIC17.35■□□□□ 0.37
BRCA1P38398 AL121894.1-201ENST00000450971 436 ntTSL 2 BASIC17.35■□□□□ 0.37
BRCA1P38398 AC090820.1-201ENST00000519722 591 ntBASIC17.35■□□□□ 0.37
BRCA1P38398 LY6E-215ENST00000523847 427 ntTSL 3 BASIC17.35■□□□□ 0.37
BRCA1P38398 ZFP1-207ENST00000567481 493 ntTSL 4 BASIC17.35■□□□□ 0.37
BRCA1P38398 ARL17B-203ENST00000570618 1140 ntTSL 2 BASIC17.35■□□□□ 0.37
BRCA1P38398 FAM187B2P-201ENST00000577135 713 ntBASIC17.35■□□□□ 0.37
BRCA1P38398 KRT8P34-201ENST00000577607 1044 ntBASIC17.35■□□□□ 0.37
BRCA1P38398 ATF7-212ENST00000591397 860 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
BRCA1P38398 AC016586.1-201ENST00000600056 684 ntTSL 3 BASIC17.35■□□□□ 0.37
BRCA1P38398 ERP29-202ENST00000455836 1333 ntTSL 2 BASIC17.35■□□□□ 0.37
BRCA1P38398 BFSP1-205ENST00000536626 2075 ntTSL 2 BASIC17.35■□□□□ 0.37
BRCA1P38398 LCK-202ENST00000336890 2117 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
BRCA1P38398 AC092115.1-201ENST00000566277 1402 ntBASIC17.35■□□□□ 0.37
BRCA1P38398 TMC3-AS1-203ENST00000559781 2195 ntTSL 3 BASIC17.35■□□□□ 0.37
BRCA1P38398 FAM76A-203ENST00000373949 2273 ntTSL 2 BASIC17.35■□□□□ 0.37
BRCA1P38398 NAP1L4-222ENST00000620138 2479 ntTSL 2 BASIC17.35■□□□□ 0.37
BRCA1P38398 AC006063.2-201ENST00000640161 1696 ntTSL 5 BASIC17.35■□□□□ 0.37
BRCA1P38398 PLTP-203ENST00000372431 1743 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
BRCA1P38398 CLN8-204ENST00000519254 1769 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
BRCA1P38398 RNF222-201ENST00000344001 2786 ntAPPRIS P1 BASIC17.35■□□□□ 0.37
BRCA1P38398 DUS2-202ENST00000432752 1864 ntTSL 2 BASIC17.35■□□□□ 0.37
BRCA1P38398 TCF25-201ENST00000263346 2233 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
BRCA1P38398 NOS3-210ENST00000484524 2537 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
BRCA1P38398 EPPIN-201ENST00000336443 1217 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
BRCA1P38398 IFNLR1-203ENST00000374418 674 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
BRCA1P38398 OR2W2P-201ENST00000406313 909 ntBASIC17.35■□□□□ 0.37
BRCA1P38398 AC006328.1-201ENST00000437571 379 ntBASIC17.35■□□□□ 0.37
BRCA1P38398 AL136084.1-201ENST00000449172 318 ntBASIC17.35■□□□□ 0.37
BRCA1P38398 AC074389.3-201ENST00000450458 454 ntTSL 3 BASIC17.35■□□□□ 0.37
BRCA1P38398 TROAP-213ENST00000550709 778 ntAPPRIS ALT2 TSL 2 BASIC17.35■□□□□ 0.37
BRCA1P38398 CDIPT-AS1-202ENST00000565014 729 ntTSL 2 BASIC17.35■□□□□ 0.37
BRCA1P38398 RN7SL121P-201ENST00000584223 273 ntBASIC17.35■□□□□ 0.37
BRCA1P38398 AP001043.1-206ENST00000613045 730 ntTSL 5 BASIC17.35■□□□□ 0.37
BRCA1P38398 AL008638.4-201ENST00000624792 1315 ntBASIC17.35■□□□□ 0.37
BRCA1P38398 SHQ1-201ENST00000325599 2879 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
BRCA1P38398 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
BRCA1P38398 TM4SF19-203ENST00000446879 1582 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
BRCA1P38398 CHRNA2-201ENST00000240132 1735 ntAPPRIS ALT2 TSL 2 BASIC17.35■□□□□ 0.37
BRCA1P38398 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
BRCA1P38398 ADPRHL1-201ENST00000356501 1877 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
BRCA1P38398 RRM1-214ENST00000534285 2075 ntTSL 5 BASIC17.34■□□□□ 0.37
BRCA1P38398 PRRT2-202ENST00000358758 2567 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
BRCA1P38398 TFR2-202ENST00000431692 2631 ntTSL 5 BASIC17.34■□□□□ 0.37
BRCA1P38398 IL18BP-201ENST00000260049 1354 ntAPPRIS P2 TSL 1 (best) BASIC17.34■□□□□ 0.37
BRCA1P38398 FBXL3-201ENST00000355619 3503 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
BRCA1P38398 OLFML2B-202ENST00000367938 1153 ntTSL 2 BASIC17.34■□□□□ 0.37
BRCA1P38398 MED15P3-201ENST00000413613 326 ntBASIC17.34■□□□□ 0.37
BRCA1P38398 RPSAP12-201ENST00000435879 888 ntBASIC17.34■□□□□ 0.37
BRCA1P38398 TGFBI-207ENST00000508076 1034 ntTSL 2 BASIC17.34■□□□□ 0.37
BRCA1P38398 AC100858.1-201ENST00000514059 1228 ntBASIC17.34■□□□□ 0.37
BRCA1P38398 AP000640.1-201ENST00000525337 879 ntTSL 2 BASIC17.34■□□□□ 0.37
BRCA1P38398 GPN3-203ENST00000543199 1604 ntTSL 5 BASIC17.34■□□□□ 0.37
BRCA1P38398 RORA-AS1-202ENST00000558140 869 ntTSL 2 BASIC17.34■□□□□ 0.37
BRCA1P38398 OVOL3-201ENST00000585332 695 ntAPPRIS ALT2 TSL 5 BASIC17.34■□□□□ 0.37
BRCA1P38398 OVOL3-202ENST00000633214 675 ntAPPRIS P2 TSL 5 BASIC17.34■□□□□ 0.37
BRCA1P38398 DSG2-201ENST00000261590 5831 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
BRCA1P38398 ANKRD35-202ENST00000544626 3093 ntTSL 5 BASIC17.34■□□□□ 0.37
BRCA1P38398 EPB41L5-203ENST00000443124 2872 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
BRCA1P38398 TCF3-212ENST00000588136 2658 ntAPPRIS ALT2 TSL 2 BASIC17.34■□□□□ 0.37
BRCA1P38398 BNIP2-213ENST00000612191 2515 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
BRCA1P38398 RBPJL-201ENST00000343694 2489 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
BRCA1P38398 RPN1-201ENST00000296255 2314 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
BRCA1P38398 LDLRAD4-205ENST00000585931 2118 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
BRCA1P38398 TUB-AS1-201ENST00000506601 2021 ntTSL 2 BASIC17.34■□□□□ 0.37
BRCA1P38398 MPP6-202ENST00000396475 3848 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
BRCA1P38398 LILRB5-202ENST00000345866 1864 ntTSL 2 BASIC17.34■□□□□ 0.37
BRCA1P38398 NEK2-201ENST00000366998 1865 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
BRCA1P38398 PSMC5-201ENST00000310144 1579 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 33.2 ms