Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 CNOT3-204ENST00000447684 2765 ntTSL 2 BASIC12.96□□□□□ -0.33
COL8A1P27658 NF2-205ENST00000361452 5884 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
COL8A1P27658 AP1M1-202ENST00000429941 1578 ntTSL 2 BASIC12.96□□□□□ -0.33
COL8A1P27658 ZDHHC13-202ENST00000446113 2445 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
COL8A1P27658 PSMB4-201ENST00000290541 964 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
COL8A1P27658 RPL35-201ENST00000348462 455 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
COL8A1P27658 CCDC167-201ENST00000373408 619 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
COL8A1P27658 NCR3-202ENST00000376071 541 ntTSL 5 BASIC12.96□□□□□ -0.33
COL8A1P27658 C2orf15-202ENST00000409684 1058 ntAPPRIS P1 TSL 3 BASIC12.96□□□□□ -0.33
COL8A1P27658 SEC63P1-201ENST00000425785 1258 ntBASIC12.96□□□□□ -0.33
COL8A1P27658 AL133481.1-201ENST00000438554 511 ntTSL 5 BASIC12.96□□□□□ -0.33
COL8A1P27658 FAM58BP-201ENST00000439056 645 ntBASIC12.96□□□□□ -0.33
COL8A1P27658 AREG-202ENST00000502307 956 ntTSL 5 BASIC12.96□□□□□ -0.33
COL8A1P27658 AC093909.3-201ENST00000504783 336 ntBASIC12.96□□□□□ -0.33
COL8A1P27658 AC026434.2-201ENST00000506094 1078 ntBASIC12.96□□□□□ -0.33
COL8A1P27658 AC008406.1-201ENST00000509530 541 ntTSL 3 BASIC12.96□□□□□ -0.33
COL8A1P27658 EHF-205ENST00000527935 557 ntTSL 2 BASIC12.96□□□□□ -0.33
COL8A1P27658 AC025154.2-201ENST00000550530 445 ntTSL 3 BASIC12.96□□□□□ -0.33
COL8A1P27658 AL049833.2-202ENST00000556773 626 ntTSL 3 BASIC12.96□□□□□ -0.33
COL8A1P27658 LINC02176-201ENST00000569104 598 ntTSL 4 BASIC12.96□□□□□ -0.33
COL8A1P27658 AC004637.1-201ENST00000586675 482 ntTSL 3 BASIC12.96□□□□□ -0.33
COL8A1P27658 AC106774.7-201ENST00000638408 597 ntAPPRIS P1 BASIC12.96□□□□□ -0.33
COL8A1P27658 AC106774.6-201ENST00000638483 597 ntAPPRIS P1 BASIC12.96□□□□□ -0.33
COL8A1P27658 AC233724.20-201ENST00000638842 597 ntAPPRIS P1 BASIC12.96□□□□□ -0.33
COL8A1P27658 AC233724.19-201ENST00000639969 597 ntAPPRIS P1 BASIC12.96□□□□□ -0.33
COL8A1P27658 AC106774.5-201ENST00000640558 597 ntAPPRIS P1 BASIC12.96□□□□□ -0.33
COL8A1P27658 AC233724.18-201ENST00000640803 597 ntAPPRIS P1 BASIC12.96□□□□□ -0.33
COL8A1P27658 AC233724.21-201ENST00000640846 597 ntAPPRIS P1 BASIC12.96□□□□□ -0.33
COL8A1P27658 TMED7-TICAM2-201ENST00000282382 3491 ntAPPRIS P1 TSL 2 BASIC12.96□□□□□ -0.33
COL8A1P27658 MGME1-201ENST00000377704 1781 ntTSL 3 BASIC12.96□□□□□ -0.34
COL8A1P27658 SGO1-203ENST00000412997 2587 ntAPPRIS P4 TSL 1 (best) BASIC12.96□□□□□ -0.34
COL8A1P27658 CDH15-201ENST00000289746 2847 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
COL8A1P27658 SPATA6-204ENST00000396199 4964 ntTSL 2 BASIC12.96□□□□□ -0.34
COL8A1P27658 ACTL7A-201ENST00000333999 1494 ntAPPRIS P1 BASIC12.96□□□□□ -0.34
COL8A1P27658 ZDHHC13-201ENST00000399351 2283 ntTSL 1 (best) BASIC12.96□□□□□ -0.34
COL8A1P27658 MINDY2-203ENST00000559228 9238 ntAPPRIS P3 TSL 2 BASIC12.96□□□□□ -0.34
COL8A1P27658 FUNDC2-201ENST00000369498 6455 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
COL8A1P27658 RUSC1-203ENST00000368349 1968 ntAPPRIS P3 TSL 1 (best) BASIC12.96□□□□□ -0.34
COL8A1P27658 CRISPLD2-203ENST00000564567 1651 ntTSL 1 (best) BASIC12.96□□□□□ -0.34
COL8A1P27658 NUP98-201ENST00000324932 6973 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
COL8A1P27658 LITAF-201ENST00000339430 2356 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
COL8A1P27658 CHIA-204ENST00000369740 1625 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
COL8A1P27658 HEMK1-201ENST00000232854 6087 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
COL8A1P27658 RALGPS2-204ENST00000367635 5834 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
COL8A1P27658 ABCC10-201ENST00000244533 5088 ntAPPRIS P3 TSL 1 (best) BASIC12.95□□□□□ -0.34
COL8A1P27658 NLRX1-202ENST00000409109 4092 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
COL8A1P27658 CHTF18-220ENST00000631357 3555 ntAPPRIS ALT2 TSL 5 BASIC12.95□□□□□ -0.34
COL8A1P27658 LEMD3-201ENST00000308330 4764 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
COL8A1P27658 PIGT-221ENST00000638594 1835 ntTSL 5 BASIC12.95□□□□□ -0.34
COL8A1P27658 SALL3-201ENST00000536229 3997 ntTSL 3 BASIC12.95□□□□□ -0.34
COL8A1P27658 PCDHA3-202ENST00000532566 4594 ntBASIC12.95□□□□□ -0.34
COL8A1P27658 STK16-203ENST00000409516 895 ntTSL 2 BASIC12.95□□□□□ -0.34
COL8A1P27658 AC010141.1-201ENST00000411585 623 ntBASIC12.95□□□□□ -0.34
COL8A1P27658 AL354892.2-201ENST00000413088 403 ntTSL 5 BASIC12.95□□□□□ -0.34
COL8A1P27658 AC078875.1-201ENST00000431907 724 ntBASIC12.95□□□□□ -0.34
COL8A1P27658 AC084149.2-201ENST00000438443 797 ntTSL 5 BASIC12.95□□□□□ -0.34
COL8A1P27658 MRPL22P1-201ENST00000505398 616 ntBASIC12.95□□□□□ -0.34
COL8A1P27658 LINC01848-201ENST00000523446 518 ntTSL 3 BASIC12.95□□□□□ -0.34
COL8A1P27658 TMEM126A-203ENST00000528105 656 ntTSL 2 BASIC12.95□□□□□ -0.34
COL8A1P27658 PPFIBP1-204ENST00000535047 875 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
COL8A1P27658 C14orf132-204ENST00000556728 774 ntAPPRIS P1 TSL 2 BASIC12.95□□□□□ -0.34
COL8A1P27658 AC093752.3-201ENST00000567343 901 ntBASIC12.95□□□□□ -0.34
COL8A1P27658 PHBP15-201ENST00000574228 665 ntBASIC12.95□□□□□ -0.34
COL8A1P27658 NUDT4P2-201ENST00000578341 546 ntBASIC12.95□□□□□ -0.34
COL8A1P27658 MIR4472-1-201ENST00000584349 80 ntBASIC12.95□□□□□ -0.34
COL8A1P27658 AC011481.2-201ENST00000585408 426 ntTSL 3 BASIC12.95□□□□□ -0.34
COL8A1P27658 BCL2L12-204ENST00000594157 620 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
COL8A1P27658 AC007326.1-201ENST00000604539 458 ntBASIC12.95□□□□□ -0.34
COL8A1P27658 ASNSD1-206ENST00000607062 968 ntTSL 5 BASIC12.95□□□□□ -0.34
COL8A1P27658 FXYD6-FXYD2-202ENST00000614497 634 ntAPPRIS P1 TSL 3 BASIC12.95□□□□□ -0.34
COL8A1P27658 MIR6816-201ENST00000620368 66 ntBASIC12.95□□□□□ -0.34
COL8A1P27658 SLC41A1-201ENST00000367137 4997 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
COL8A1P27658 MFSD1-203ENST00000415822 2423 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
COL8A1P27658 SAMM50-201ENST00000350028 1717 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
COL8A1P27658 CALCR-207ENST00000426151 1741 ntAPPRIS P3 TSL 1 (best) BASIC12.95□□□□□ -0.34
COL8A1P27658 SLC43A3-203ENST00000395124 2617 ntAPPRIS P3 TSL 1 (best) BASIC12.95□□□□□ -0.34
COL8A1P27658 ELMO1-209ENST00000448602 2621 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
COL8A1P27658 USP4-203ENST00000415188 1454 ntTSL 3 BASIC12.95□□□□□ -0.34
COL8A1P27658 ZSWIM8-AS1-201ENST00000456638 1460 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
COL8A1P27658 TVP23C-203ENST00000428082 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC12.95□□□□□ -0.34
COL8A1P27658 BANP-201ENST00000286122 2368 ntTSL 5 BASIC12.95□□□□□ -0.34
COL8A1P27658 CYP1B1-205ENST00000610745 5250 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
COL8A1P27658 FOXN1-203ENST00000579795 2145 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
COL8A1P27658 RASD2-201ENST00000216127 3412 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
COL8A1P27658 C16orf45-209ENST00000566490 1854 ntTSL 5 BASIC12.95□□□□□ -0.34
COL8A1P27658 PPP1R1B-202ENST00000394265 1419 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
COL8A1P27658 KCNC2-209ENST00000550433 2931 ntAPPRIS ALT2 TSL 1 (best) BASIC12.95□□□□□ -0.34
COL8A1P27658 BRF1-206ENST00000446501 2858 ntTSL 2 BASIC12.95□□□□□ -0.34
COL8A1P27658 KLHL33-203ENST00000637228 5404 ntTSL 5 BASIC12.95□□□□□ -0.34
COL8A1P27658 ANTXRL-205ENST00000620264 2206 ntAPPRIS P2 TSL 5 BASIC12.94□□□□□ -0.34
COL8A1P27658 PUDP-202ENST00000412827 1376 ntTSL 2 BASIC12.94□□□□□ -0.34
COL8A1P27658 ARL6IP1-201ENST00000304414 2409 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
COL8A1P27658 LSP1-204ENST00000406638 2640 ntAPPRIS ALT2 TSL 2 BASIC12.94□□□□□ -0.34
COL8A1P27658 EGLN2-207ENST00000593726 2821 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
COL8A1P27658 RFWD2-204ENST00000367669 3033 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
COL8A1P27658 UBE2J1-201ENST00000435041 4290 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
COL8A1P27658 ENDOD1-201ENST00000278505 4687 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
COL8A1P27658 TMEM200C-202ENST00000581347 10638 ntAPPRIS P1 TSL 5 BASIC12.94□□□□□ -0.34
COL8A1P27658 SPAG9-201ENST00000262013 8273 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
COL8A1P27658 TPGS2-202ENST00000383056 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC12.94□□□□□ -0.34
Retrieved 100 of 98,524 protein–RNA pairs in 28.8 ms