Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 MRPL43-211ENST00000477279 903 ntTSL 2 BASIC18.03■□□□□ 0.48
COL5A3P25940 AC111149.2-202ENST00000518355 599 ntTSL 4 BASIC18.03■□□□□ 0.48
COL5A3P25940 AP003031.2-205ENST00000531263 683 ntTSL 2 BASIC18.03■□□□□ 0.48
COL5A3P25940 AC087203.1-201ENST00000532111 1181 ntBASIC18.03■□□□□ 0.48
COL5A3P25940 AC005323.2-202ENST00000581304 493 ntTSL 3 BASIC18.03■□□□□ 0.48
COL5A3P25940 CYB5D2-203ENST00000575251 1588 ntTSL 2 BASIC18.03■□□□□ 0.48
COL5A3P25940 CDK11A-201ENST00000356200 2653 ntTSL 5 BASIC18.03■□□□□ 0.48
COL5A3P25940 SLC9A5-201ENST00000299798 3736 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
COL5A3P25940 OGFOD2-202ENST00000397389 2308 ntTSL 2 BASIC18.03■□□□□ 0.48
COL5A3P25940 AC026412.1-203ENST00000507841 2338 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
COL5A3P25940 GHDC-202ENST00000414034 2496 ntTSL 2 BASIC18.03■□□□□ 0.48
COL5A3P25940 RAI14-201ENST00000265109 5092 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
COL5A3P25940 NRXN2-202ENST00000301894 3535 ntTSL 5 BASIC18.03■□□□□ 0.48
COL5A3P25940 HTR3E-205ENST00000436361 1371 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
COL5A3P25940 ARL8B-201ENST00000256496 3005 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
COL5A3P25940 ALOX12B-201ENST00000319144 2502 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
COL5A3P25940 ELP4-228ENST00000640954 1612 ntTSL 5 BASIC18.03■□□□□ 0.48
COL5A3P25940 PARP9-204ENST00000471785 3040 ntAPPRIS ALT2 TSL 2 BASIC18.03■□□□□ 0.48
COL5A3P25940 TXNDC11-201ENST00000283033 3140 ntAPPRIS P3 TSL 2 BASIC18.03■□□□□ 0.48
COL5A3P25940 CTSD-201ENST00000236671 2123 ntAPPRIS P2 TSL 1 (best) BASIC18.03■□□□□ 0.48
COL5A3P25940 RPRD2-201ENST00000369067 1043 ntAPPRIS ALT2 TSL 2 BASIC18.03■□□□□ 0.48
COL5A3P25940 AC128689.1-202ENST00000459861 827 ntTSL 3 BASIC18.03■□□□□ 0.48
COL5A3P25940 MRPS36-204ENST00000512880 1200 ntTSL 5 BASIC18.03■□□□□ 0.48
COL5A3P25940 AC108471.2-201ENST00000533736 1061 ntTSL 3 BASIC18.03■□□□□ 0.48
COL5A3P25940 AL132801.1-201ENST00000559675 567 ntTSL 4 BASIC18.03■□□□□ 0.48
COL5A3P25940 MRPS36-205ENST00000602380 1200 ntTSL 2 BASIC18.03■□□□□ 0.48
COL5A3P25940 SEL1L3-202ENST00000399878 4520 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
COL5A3P25940 AC020763.4-201ENST00000623414 4170 ntBASIC18.03■□□□□ 0.48
COL5A3P25940 CNBP-205ENST00000500450 1516 ntTSL 2 BASIC18.03■□□□□ 0.48
COL5A3P25940 NAA60-203ENST00000414063 2619 ntAPPRIS P1 TSL 2 BASIC18.03■□□□□ 0.48
COL5A3P25940 ARMCX6-208ENST00000539247 1928 ntAPPRIS P1 TSL 4 BASIC18.03■□□□□ 0.48
COL5A3P25940 PAX6-264ENST00000640125 1375 ntTSL 5 BASIC18.03■□□□□ 0.48
COL5A3P25940 TCP11L1-201ENST00000334274 2817 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
COL5A3P25940 COX4I1-208ENST00000564903 1481 ntTSL 2 BASIC18.02■□□□□ 0.48
COL5A3P25940 LILRB5-202ENST00000345866 1864 ntTSL 2 BASIC18.02■□□□□ 0.48
COL5A3P25940 STAG1-206ENST00000480733 1304 ntTSL 2 BASIC18.02■□□□□ 0.48
COL5A3P25940 ALDH8A1-204ENST00000367847 1587 ntTSL 2 BASIC18.02■□□□□ 0.48
COL5A3P25940 TRPC6-206ENST00000532133 2648 ntTSL 5 BASIC18.02■□□□□ 0.48
COL5A3P25940 TRIP10-210ENST00000600428 2249 ntTSL 5 BASIC18.02■□□□□ 0.48
COL5A3P25940 AJ011931.1-201ENST00000618749 2492 ntBASIC18.02■□□□□ 0.48
COL5A3P25940 CDK13-202ENST00000340829 5066 ntAPPRIS ALT1 TSL 1 (best) BASIC18.02■□□□□ 0.48
COL5A3P25940 AC232323.1-201ENST00000540724 2099 ntBASIC18.02■□□□□ 0.48
COL5A3P25940 SGCA-201ENST00000262018 1432 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
COL5A3P25940 SLC4A1-206ENST00000631130 1433 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
COL5A3P25940 ADD2-208ENST00000430656 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.48
COL5A3P25940 BICRA-204ENST00000614245 5697 ntAPPRIS ALT2 TSL 5 BASIC18.02■□□□□ 0.48
COL5A3P25940 SVOPL-203ENST00000421622 1653 ntTSL 5 BASIC18.02■□□□□ 0.48
COL5A3P25940 TBXAS1-201ENST00000336425 2185 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
COL5A3P25940 AC006486.2-201ENST00000624246 2199 ntBASIC18.02■□□□□ 0.48
COL5A3P25940 HLA-DRB5-201ENST00000374975 1260 ntAPPRIS P1 BASIC18.02■□□□□ 0.48
COL5A3P25940 LST1-204ENST00000376086 554 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
COL5A3P25940 LINP1-201ENST00000417112 917 ntTSL 2 BASIC18.02■□□□□ 0.48
COL5A3P25940 AC103702.2-203ENST00000425510 379 ntTSL 5 BASIC18.02■□□□□ 0.48
COL5A3P25940 GS1-124K5.4-201ENST00000445681 540 ntTSL 2 BASIC18.02■□□□□ 0.48
COL5A3P25940 AC004528.1-201ENST00000588380 641 ntTSL 5 BASIC18.02■□□□□ 0.48
COL5A3P25940 AC010127.1-202ENST00000597623 713 ntTSL 2 BASIC18.02■□□□□ 0.48
COL5A3P25940 AL031673.1-201ENST00000611460 466 ntBASIC18.02■□□□□ 0.48
COL5A3P25940 AL627230.2-201ENST00000613254 655 ntBASIC18.02■□□□□ 0.48
COL5A3P25940 MME-218ENST00000625667 363 ntTSL 5 BASIC18.02■□□□□ 0.48
COL5A3P25940 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
COL5A3P25940 PHB-210ENST00000511832 1509 ntTSL 2 BASIC18.02■□□□□ 0.48
COL5A3P25940 USH1C-207ENST00000527720 2278 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
COL5A3P25940 SLC6A2-204ENST00000561820 2268 ntTSL 5 BASIC18.02■□□□□ 0.48
COL5A3P25940 ZNF514-202ENST00000411425 2755 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
COL5A3P25940 ADCY1-204ENST00000621543 1647 ntTSL 5 BASIC18.02■□□□□ 0.48
COL5A3P25940 RRM1-214ENST00000534285 2075 ntTSL 5 BASIC18.02■□□□□ 0.47
COL5A3P25940 GALNTL6-205ENST00000511251 2905 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
COL5A3P25940 SLC50A1-203ENST00000368404 1300 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
COL5A3P25940 TAPT1-201ENST00000405303 4591 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
COL5A3P25940 DGKI-203ENST00000446122 4070 ntAPPRIS ALT2 TSL 5 BASIC18.02■□□□□ 0.47
COL5A3P25940 NPHP3-AS1-201ENST00000489343 2957 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
COL5A3P25940 ALDH3A1-201ENST00000225740 1779 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
COL5A3P25940 NAALADL1-203ENST00000356632 2118 ntTSL 5 BASIC18.01■□□□□ 0.47
COL5A3P25940 FAM96A-203ENST00000557835 1536 ntTSL 2 BASIC18.01■□□□□ 0.47
COL5A3P25940 ZBTB37-203ENST00000367704 2323 ntTSL 2 BASIC18.01■□□□□ 0.47
COL5A3P25940 CST5-201ENST00000304710 756 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
COL5A3P25940 CRHR1-205ENST00000352855 1146 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
COL5A3P25940 IGHV5-51-201ENST00000390626 410 ntAPPRIS P1 BASIC18.01■□□□□ 0.47
COL5A3P25940 ZNF286A-201ENST00000395893 654 ntTSL 3 BASIC18.01■□□□□ 0.47
COL5A3P25940 GH2-203ENST00000449787 753 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
COL5A3P25940 LAMTOR4-209ENST00000488241 613 ntTSL 2 BASIC18.01■□□□□ 0.47
COL5A3P25940 GDNF-207ENST00000515058 764 ntTSL 5 BASIC18.01■□□□□ 0.47
COL5A3P25940 RN7SKP155-201ENST00000516031 288 ntBASIC18.01■□□□□ 0.47
COL5A3P25940 AC068831.5-201ENST00000557387 328 ntBASIC18.01■□□□□ 0.47
COL5A3P25940 NMRK2-202ENST00000593949 869 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
COL5A3P25940 NMRK2-204ENST00000599576 691 ntTSL 3 BASIC18.01■□□□□ 0.47
COL5A3P25940 ANKRD20A21P-201ENST00000611282 517 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
COL5A3P25940 LINC01002-234ENST00000633808 848 ntTSL 5 BASIC18.01■□□□□ 0.47
COL5A3P25940 MTUS1-229ENST00000634613 1193 ntTSL 5 BASIC18.01■□□□□ 0.47
COL5A3P25940 ESR1-214ENST00000638569 132 ntTSL 5 BASIC18.01■□□□□ 0.47
COL5A3P25940 TRAF3IP1-201ENST00000373327 4279 ntAPPRIS P3 TSL 1 (best) BASIC18.01■□□□□ 0.47
COL5A3P25940 MLST8-201ENST00000301724 1735 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
COL5A3P25940 SLC35A3-209ENST00000638338 2890 ntTSL 5 BASIC18.01■□□□□ 0.47
COL5A3P25940 CRACR2A-201ENST00000252322 2186 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
COL5A3P25940 APBB3-202ENST00000356738 1804 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
COL5A3P25940 HMGA1-203ENST00000374116 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC18.01■□□□□ 0.47
COL5A3P25940 CYB561A3-203ENST00000447532 1803 ntTSL 5 BASIC18.01■□□□□ 0.47
COL5A3P25940 AC068946.1-202ENST00000318673 2745 ntAPPRIS P1 TSL 2 BASIC18.01■□□□□ 0.47
COL5A3P25940 PAIP2-201ENST00000265192 1459 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
COL5A3P25940 TMEM56-RWDD3-202ENST00000604534 1491 ntAPPRIS P1 TSL 2 BASIC18.01■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 57.1 ms