Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 LINC01136-203ENST00000457348 2539 ntTSL 2 BASIC15.62■□□□□ 0.09
BDNFP23560 TMEM209-202ENST00000462753 2322 ntAPPRIS ALT1 TSL 5 BASIC15.62■□□□□ 0.09
BDNFP23560 KITLG-202ENST00000347404 1948 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
BDNFP23560 AMT-239ENST00000636865 1914 ntTSL 5 BASIC15.62■□□□□ 0.09
BDNFP23560 MLST8-201ENST00000301724 1735 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
BDNFP23560 AC004899.1-201ENST00000424687 1714 ntBASIC15.62■□□□□ 0.09
BDNFP23560 BMP4-206ENST00000559087 1708 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
BDNFP23560 CRLF2-201ENST00000381566 1545 ntAPPRIS P1 TSL 5 BASIC15.62■□□□□ 0.09
BDNFP23560 NPY5R-203ENST00000515560 3183 ntAPPRIS P1 TSL 2 BASIC15.62■□□□□ 0.09
BDNFP23560 PNMA1-201ENST00000316836 2590 ntAPPRIS P1 BASIC15.62■□□□□ 0.09
BDNFP23560 EPHA5-202ENST00000354839 3427 ntAPPRIS ALT2 TSL 1 (best) BASIC15.62■□□□□ 0.09
BDNFP23560 PKD1P5-201ENST00000532415 10291 ntBASIC15.62■□□□□ 0.09
BDNFP23560 SLC38A5-213ENST00000620913 1993 ntAPPRIS P1 TSL 5 BASIC15.62■□□□□ 0.09
BDNFP23560 SERPING1-204ENST00000378324 1751 ntAPPRIS ALT2 TSL 2 BASIC15.62■□□□□ 0.09
BDNFP23560 CRB2-201ENST00000359999 3659 ntTSL 2 BASIC15.62■□□□□ 0.09
BDNFP23560 CCDC51-201ENST00000395694 1560 ntAPPRIS P1 TSL 2 BASIC15.62■□□□□ 0.09
BDNFP23560 AC022400.6-201ENST00000603027 5818 ntAPPRIS P5 TSL 2 BASIC15.62■□□□□ 0.09
BDNFP23560 CDC25B-203ENST00000344256 3071 ntTSL 2 BASIC15.62■□□□□ 0.09
BDNFP23560 FASTKD5-201ENST00000380266 2874 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
BDNFP23560 TBPL2-201ENST00000247219 2037 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
BDNFP23560 NR4A1-213ENST00000550082 2029 ntTSL 5 BASIC15.61■□□□□ 0.09
BDNFP23560 STRN3-201ENST00000355683 3970 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
BDNFP23560 PCDHB13-201ENST00000341948 5061 ntAPPRIS P1 BASIC15.61■□□□□ 0.09
BDNFP23560 ARNT2-209ENST00000622346 2932 ntTSL 2 BASIC15.61■□□□□ 0.09
BDNFP23560 UBAC2-202ENST00000376440 2525 ntTSL 2 BASIC15.61■□□□□ 0.09
BDNFP23560 VARS2-201ENST00000321897 4073 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
BDNFP23560 MSI2-202ENST00000322684 1860 ntAPPRIS ALT2 TSL 2 BASIC15.61■□□□□ 0.09
BDNFP23560 DIS3-202ENST00000377780 5232 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
BDNFP23560 TNS2-201ENST00000314250 5010 ntAPPRIS ALT2 TSL 1 (best) BASIC15.61■□□□□ 0.09
BDNFP23560 DEGS1-201ENST00000323699 2101 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
BDNFP23560 EEF1AKMT3-201ENST00000300209 2563 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
BDNFP23560 MAOB-201ENST00000378069 2566 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
BDNFP23560 KHK-201ENST00000260598 2397 ntAPPRIS P5 TSL 2 BASIC15.61■□□□□ 0.09
BDNFP23560 BLMH-201ENST00000261714 2365 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
BDNFP23560 BRF1-205ENST00000440513 2368 ntTSL 2 BASIC15.61■□□□□ 0.09
BDNFP23560 BAIAP2-201ENST00000321280 1939 ntAPPRIS ALT2 TSL 1 (best) BASIC15.61■□□□□ 0.09
BDNFP23560 ACTA1-202ENST00000366684 1491 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
BDNFP23560 GNAI2-207ENST00000451956 1486 ntTSL 2 BASIC15.61■□□□□ 0.09
BDNFP23560 HS2ST1-201ENST00000370550 6736 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
BDNFP23560 TAS1R1-201ENST00000333172 2892 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
BDNFP23560 CSH2-201ENST00000336844 1173 ntTSL 2 BASIC15.61■□□□□ 0.09
BDNFP23560 CSH2-202ENST00000345366 598 ntTSL 5 BASIC15.61■□□□□ 0.09
BDNFP23560 VAMP4-202ENST00000367740 1193 ntAPPRIS ALT1 TSL 1 (best) BASIC15.61■□□□□ 0.09
BDNFP23560 CTNNBIP1-202ENST00000377258 852 ntAPPRIS P1 TSL 3 BASIC15.61■□□□□ 0.09
BDNFP23560 FNTAP2-201ENST00000430308 634 ntBASIC15.61■□□□□ 0.09
BDNFP23560 AL139420.1-201ENST00000439394 653 ntTSL 3 BASIC15.61■□□□□ 0.09
BDNFP23560 AC092800.1-201ENST00000449492 579 ntTSL 2 BASIC15.61■□□□□ 0.09
BDNFP23560 PGAP2-214ENST00000465307 1100 ntTSL 2 BASIC15.61■□□□□ 0.09
BDNFP23560 IFITM1-204ENST00000528780 730 ntAPPRIS P1 TSL 3 BASIC15.61■□□□□ 0.09
BDNFP23560 AURKB-202ENST00000534871 1167 ntTSL 2 BASIC15.61■□□□□ 0.09
BDNFP23560 ERICH5-202ENST00000545282 596 ntAPPRIS ALT2 TSL 2 BASIC15.61■□□□□ 0.09
BDNFP23560 AC026495.1-203ENST00000557528 906 ntTSL 5 BASIC15.61■□□□□ 0.09
BDNFP23560 AC068790.8-201ENST00000618862 504 ntAPPRIS P1 TSL 3 BASIC15.61■□□□□ 0.09
BDNFP23560 PCBP2-OT1-201ENST00000634357 590 ntBASIC15.61■□□□□ 0.09
BDNFP23560 C17orf80-203ENST00000359042 3645 ntAPPRIS P3 TSL 5 BASIC15.61■□□□□ 0.09
BDNFP23560 DBF4-201ENST00000265728 3907 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
BDNFP23560 ZNF252P-AS1-201ENST00000527067 3236 ntBASIC15.61■□□□□ 0.09
BDNFP23560 PCMTD2-207ENST00000609372 1321 ntTSL 4 BASIC15.61■□□□□ 0.09
BDNFP23560 AC138517.2-201ENST00000637503 2594 ntAPPRIS P1 TSL 5 BASIC15.61■□□□□ 0.09
BDNFP23560 RREB1-204ENST00000379938 8778 ntAPPRIS P3 TSL 1 (best) BASIC15.61■□□□□ 0.09
BDNFP23560 CTSD-201ENST00000236671 2123 ntAPPRIS P2 TSL 1 (best) BASIC15.61■□□□□ 0.09
BDNFP23560 ZNF365-205ENST00000395254 4173 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
BDNFP23560 PLEKHN1-201ENST00000379407 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC15.6■□□□□ 0.09
BDNFP23560 LINC02228-204ENST00000642115 2962 ntBASIC15.6■□□□□ 0.09
BDNFP23560 NEBL-203ENST00000417816 3008 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
BDNFP23560 DPYSL3-201ENST00000343218 5476 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
BDNFP23560 AL161772.1-201ENST00000610494 4412 ntBASIC15.6■□□□□ 0.09
BDNFP23560 RBM14-201ENST00000310137 2828 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
BDNFP23560 ZFP36-203ENST00000597629 1786 ntAPPRIS P2 TSL 1 (best) BASIC15.6■□□□□ 0.09
BDNFP23560 SH3BP2-207ENST00000503393 9158 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
BDNFP23560 GLIPR1L2-204ENST00000550916 2609 ntAPPRIS ALT2 TSL 1 (best) BASIC15.6■□□□□ 0.09
BDNFP23560 AL133338.1-201ENST00000565695 1517 ntBASIC15.6■□□□□ 0.09
BDNFP23560 FBXO28-201ENST00000366862 5451 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
BDNFP23560 WDR20-205ENST00000424963 2695 ntTSL 5 BASIC15.6■□□□□ 0.09
BDNFP23560 MPV17-201ENST00000233545 998 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
BDNFP23560 VSIG2-201ENST00000326621 1148 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
BDNFP23560 HIST1H2AJ-201ENST00000333151 387 ntAPPRIS P1 BASIC15.6■□□□□ 0.09
BDNFP23560 C1orf53-201ENST00000367393 588 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
BDNFP23560 DPM3-202ENST00000368399 517 ntBASIC15.6■□□□□ 0.09
BDNFP23560 IP6K2-205ENST00000413298 792 ntTSL 3 BASIC15.6■□□□□ 0.09
BDNFP23560 AC006003.1-201ENST00000448541 613 ntTSL 4 BASIC15.6■□□□□ 0.09
BDNFP23560 AC104073.2-201ENST00000453737 312 ntBASIC15.6■□□□□ 0.09
BDNFP23560 LAMA5-AS1-203ENST00000478167 690 ntTSL 3 BASIC15.6■□□□□ 0.09
BDNFP23560 AC005740.2-201ENST00000511085 419 ntBASIC15.6■□□□□ 0.09
BDNFP23560 ADIG-204ENST00000537425 770 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
BDNFP23560 ZNF385A-213ENST00000551771 1111 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
BDNFP23560 C14orf132-204ENST00000556728 774 ntAPPRIS P1 TSL 2 BASIC15.6■□□□□ 0.09
BDNFP23560 FXYD6-217ENST00000584394 669 ntTSL 3 BASIC15.6■□□□□ 0.09
BDNFP23560 AC005324.6-201ENST00000587972 613 ntBASIC15.6■□□□□ 0.09
BDNFP23560 UBXN1-218ENST00000616865 1002 ntTSL 5 BASIC15.6■□□□□ 0.09
BDNFP23560 AC004923.1-202ENST00000642106 209 ntBASIC15.6■□□□□ 0.09
BDNFP23560 ALDOA-228ENST00000627059 2402 ntAPPRIS ALT1 TSL 5 BASIC15.6■□□□□ 0.09
BDNFP23560 FGD5P1-202ENST00000614866 2498 ntBASIC15.6■□□□□ 0.09
BDNFP23560 SEC24D-202ENST00000419654 2786 ntTSL 5 BASIC15.6■□□□□ 0.09
BDNFP23560 DUOXA1-210ENST00000559014 1965 ntTSL 2 BASIC15.6■□□□□ 0.09
BDNFP23560 PKN2-201ENST00000316005 2632 ntTSL 5 BASIC15.6■□□□□ 0.09
BDNFP23560 RUFY1-204ENST00000437570 2642 ntAPPRIS ALT2 TSL 2 BASIC15.6■□□□□ 0.09
BDNFP23560 HTR3A-202ENST00000355556 2331 ntTSL 2 BASIC15.6■□□□□ 0.09
BDNFP23560 ALAS2-201ENST00000330807 2027 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
BDNFP23560 AGPAT1-201ENST00000336984 2021 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 49.2 ms