Protein–RNA interactions for Protein: O95484

CLDN9, Claudin-9, humanhuman

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN9O95484 LINC00266-1-201ENST00000279067 928 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
CLDN9O95484 FAM169B-201ENST00000332908 579 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
CLDN9O95484 LCE3A-201ENST00000335674 270 ntAPPRIS P1 BASIC14.38□□□□□ -0.11
CLDN9O95484 NCR3-204ENST00000376073 1097 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
CLDN9O95484 CRB3P1-201ENST00000449338 276 ntBASIC14.38□□□□□ -0.11
CLDN9O95484 SEPT7P9-202ENST00000489259 743 ntTSL 3 BASIC14.38□□□□□ -0.11
CLDN9O95484 SPDYE16-201ENST00000515340 858 ntAPPRIS ALT2 TSL 5 BASIC14.38□□□□□ -0.11
CLDN9O95484 AC068587.3-201ENST00000526613 355 ntBASIC14.38□□□□□ -0.11
CLDN9O95484 LINC02298-201ENST00000546968 965 ntTSL 5 BASIC14.38□□□□□ -0.11
CLDN9O95484 AP000439.4-201ENST00000567742 664 ntTSL 3 BASIC14.38□□□□□ -0.11
CLDN9O95484 RN7SL48P-201ENST00000579283 293 ntBASIC14.38□□□□□ -0.11
CLDN9O95484 AC138696.2-201ENST00000607376 223 ntBASIC14.38□□□□□ -0.11
CLDN9O95484 BCRP3-202ENST00000621462 1021 ntTSL 3 BASIC14.38□□□□□ -0.11
CLDN9O95484 ENPP7P14-201ENST00000621765 1040 ntBASIC14.38□□□□□ -0.11
CLDN9O95484 CDH20-201ENST00000262717 3882 ntAPPRIS P1 TSL 2 BASIC14.38□□□□□ -0.11
CLDN9O95484 SLC25A2-201ENST00000239451 1417 ntAPPRIS P1 BASIC14.38□□□□□ -0.11
CLDN9O95484 FOS-202ENST00000535987 1402 ntTSL 2 BASIC14.38□□□□□ -0.11
CLDN9O95484 MBD4-201ENST00000249910 2470 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
CLDN9O95484 WIZ-203ENST00000545156 4466 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
CLDN9O95484 UMODL1-AS1-201ENST00000329015 2141 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
CLDN9O95484 FAM118B-210ENST00000627851 1862 ntTSL 5 BASIC14.38□□□□□ -0.11
CLDN9O95484 ARMC5-202ENST00000408912 3626 ntAPPRIS ALT2 TSL 2 BASIC14.38□□□□□ -0.11
CLDN9O95484 IL6R-201ENST00000344086 3217 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
CLDN9O95484 KIF26B-202ENST00000407071 7287 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
CLDN9O95484 TSPAN14-210ENST00000616406 2436 ntTSL 2 BASIC14.37□□□□□ -0.11
CLDN9O95484 HOXB4-201ENST00000332503 3757 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
CLDN9O95484 FAM160A2-202ENST00000449352 3354 ntAPPRIS ALT1 TSL 1 (best) BASIC14.37□□□□□ -0.11
CLDN9O95484 HDAC2-206ENST00000519108 2000 ntTSL 2 BASIC14.37□□□□□ -0.11
CLDN9O95484 TTC7A-202ENST00000394850 4306 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
CLDN9O95484 PDE8A-203ENST00000394553 3912 ntAPPRIS P4 TSL 1 (best) BASIC14.37□□□□□ -0.11
CLDN9O95484 HCRTR1-202ENST00000373706 1642 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
CLDN9O95484 AC015688.4-201ENST00000580780 1647 ntBASIC14.37□□□□□ -0.11
CLDN9O95484 AC004706.4-201ENST00000634965 3537 ntAPPRIS P1 BASIC14.37□□□□□ -0.11
CLDN9O95484 PPP1R16A-201ENST00000292539 2722 ntAPPRIS P1 TSL 2 BASIC14.37□□□□□ -0.11
CLDN9O95484 IL21R-AS1-201ENST00000563191 2615 ntTSL 2 BASIC14.37□□□□□ -0.11
CLDN9O95484 AIPL1-207ENST00000574506 2074 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
CLDN9O95484 SRRD-201ENST00000215917 4020 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
CLDN9O95484 LINC02551-202ENST00000533812 2203 ntTSL 5 BASIC14.37□□□□□ -0.11
CLDN9O95484 KDELC2-201ENST00000323468 4312 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
CLDN9O95484 PAK1-201ENST00000278568 2543 ntTSL 2 BASIC14.37□□□□□ -0.11
CLDN9O95484 AKR1A1-202ENST00000372070 1818 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
CLDN9O95484 GAL-201ENST00000265643 818 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
CLDN9O95484 KRTAP19-7-201ENST00000334849 440 ntAPPRIS P1 BASIC14.37□□□□□ -0.11
CLDN9O95484 CRYGN-201ENST00000337323 754 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
CLDN9O95484 MGST3-203ENST00000367885 680 ntTSL 2 BASIC14.37□□□□□ -0.11
CLDN9O95484 GABARAPL2-201ENST00000037243 1002 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
CLDN9O95484 TPSD1-202ENST00000397534 896 ntAPPRIS ALT2 TSL 5 BASIC14.37□□□□□ -0.11
CLDN9O95484 MAGEC1-202ENST00000406005 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
CLDN9O95484 AP006294.1-201ENST00000415407 339 ntBASIC14.37□□□□□ -0.11
CLDN9O95484 POM121L8P-201ENST00000417732 1281 ntBASIC14.37□□□□□ -0.11
CLDN9O95484 POM121L9P-203ENST00000441984 1285 ntBASIC14.37□□□□□ -0.11
CLDN9O95484 SIRPB2-203ENST00000444444 884 ntTSL 2 BASIC14.37□□□□□ -0.11
CLDN9O95484 SNHG11-212ENST00000449351 954 ntTSL 5 BASIC14.37□□□□□ -0.11
CLDN9O95484 GCOM2-201ENST00000509133 1104 ntBASIC14.37□□□□□ -0.11
CLDN9O95484 CLRN2-201ENST00000511148 823 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
CLDN9O95484 ACRV1-202ENST00000527795 782 ntAPPRIS ALT2 TSL 2 BASIC14.37□□□□□ -0.11
CLDN9O95484 NEU3-203ENST00000529024 581 ntTSL 3 BASIC14.37□□□□□ -0.11
CLDN9O95484 IL32-218ENST00000530890 774 ntAPPRIS ALT2 TSL 2 BASIC14.37□□□□□ -0.11
CLDN9O95484 GABARAPL2-202ENST00000563744 791 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
CLDN9O95484 LAT-209ENST00000564277 921 ntAPPRIS ALT2 TSL 5 BASIC14.37□□□□□ -0.11
CLDN9O95484 MIR5189-201ENST00000577370 114 ntBASIC14.37□□□□□ -0.11
CLDN9O95484 ANAPC11-215ENST00000578550 599 ntAPPRIS P1 TSL 2 BASIC14.37□□□□□ -0.11
CLDN9O95484 AC010319.3-201ENST00000597028 470 ntBASIC14.37□□□□□ -0.11
CLDN9O95484 AC008750.3-201ENST00000601148 437 ntTSL 5 BASIC14.37□□□□□ -0.11
CLDN9O95484 AC138466.3-201ENST00000619983 221 ntBASIC14.37□□□□□ -0.11
CLDN9O95484 RAB18-207ENST00000535776 4811 ntTSL 2 BASIC14.37□□□□□ -0.11
CLDN9O95484 CRLS1-201ENST00000378863 3958 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
CLDN9O95484 MLF1-217ENST00000619577 2290 ntTSL 5 BASIC14.37□□□□□ -0.11
CLDN9O95484 CCNF-202ENST00000397066 4283 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
CLDN9O95484 UBA6-AS1-201ENST00000498917 1445 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
CLDN9O95484 KIAA1257-204ENST00000511438 2408 ntAPPRIS ALT2 TSL 2 BASIC14.37□□□□□ -0.11
CLDN9O95484 AC006504.5-208ENST00000588784 2401 ntBASIC14.37□□□□□ -0.11
CLDN9O95484 COQ7-209ENST00000569127 2575 ntTSL 2 BASIC14.37□□□□□ -0.11
CLDN9O95484 CACNA2D4-220ENST00000585732 2566 ntTSL 5 BASIC14.37□□□□□ -0.11
CLDN9O95484 PRKD2-206ENST00000595515 3012 ntTSL 2 BASIC14.37□□□□□ -0.11
CLDN9O95484 SDHAF2-201ENST00000301761 2033 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
CLDN9O95484 ZNF256-201ENST00000282308 2172 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
CLDN9O95484 TJP3-207ENST00000589378 3068 ntAPPRIS ALT2 TSL 2 BASIC14.37□□□□□ -0.11
CLDN9O95484 GPBAR1-203ENST00000521462 1465 ntAPPRIS P1 TSL 2 BASIC14.37□□□□□ -0.11
CLDN9O95484 ACSM1-201ENST00000307493 2051 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
CLDN9O95484 SPACA9-203ENST00000372136 2536 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
CLDN9O95484 WSCD1-202ENST00000539421 2665 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.11
CLDN9O95484 CNTNAP3P2-201ENST00000617175 3861 ntBASIC14.37□□□□□ -0.11
CLDN9O95484 MAP3K12-201ENST00000267079 4319 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
CLDN9O95484 DNAJC27-201ENST00000264711 4992 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
CLDN9O95484 PRSS54-201ENST00000219301 1810 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
CLDN9O95484 LDHAL6B-201ENST00000307144 1693 ntAPPRIS P1 BASIC14.36□□□□□ -0.11
CLDN9O95484 ZNF789-201ENST00000331410 1654 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
CLDN9O95484 PRR19-201ENST00000341747 1530 ntAPPRIS P2 TSL 5 BASIC14.36□□□□□ -0.11
CLDN9O95484 PPP2R1B-203ENST00000393055 1525 ntTSL 2 BASIC14.36□□□□□ -0.11
CLDN9O95484 AC011840.2-201ENST00000563063 1520 ntBASIC14.36□□□□□ -0.11
CLDN9O95484 ARID3B-201ENST00000346246 4271 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
CLDN9O95484 ABCC6-208ENST00000622290 4941 ntTSL 5 BASIC14.36□□□□□ -0.11
CLDN9O95484 C21orf58-202ENST00000397679 2900 ntAPPRIS ALT2 TSL 2 BASIC14.36□□□□□ -0.11
CLDN9O95484 GPR132-203ENST00000539291 2779 ntAPPRIS P3 TSL 2 BASIC14.36□□□□□ -0.11
CLDN9O95484 ZBED8-202ENST00000523213 2484 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
CLDN9O95484 PAPSS2-202ENST00000456849 3856 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
CLDN9O95484 PPARGC1B-203ENST00000394320 4803 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
CLDN9O95484 CNOT9-201ENST00000273064 4079 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
CLDN9O95484 LINC00475-202ENST00000416438 2506 ntTSL 2 BASIC14.36□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 46.3 ms