Protein–RNA interactions for Protein: O43924

PDE6D, Retinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit delta, humanhuman

Predictions only

Length 150 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDE6DO43924 STAG3-206ENST00000426455 4450 ntAPPRIS P3 TSL 1 (best) BASIC11.56□□□□□ -0.56
PDE6DO43924 TBCE-207ENST00000543662 2117 ntAPPRIS ALT2 TSL 2 BASIC11.56□□□□□ -0.56
PDE6DO43924 SPOCK3-218ENST00000511531 2908 ntAPPRIS ALT2 TSL 5 BASIC11.56□□□□□ -0.56
PDE6DO43924 USP2-201ENST00000260187 3732 ntAPPRIS P4 TSL 1 (best) BASIC11.56□□□□□ -0.56
PDE6DO43924 AP4M1-206ENST00000429084 1836 ntTSL 5 BASIC11.56□□□□□ -0.56
PDE6DO43924 DLX3-201ENST00000434704 2602 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
PDE6DO43924 CCDC140-201ENST00000295226 1699 ntAPPRIS P2 TSL 1 (best) BASIC11.55□□□□□ -0.56
PDE6DO43924 LINC01864-201ENST00000587218 1661 ntTSL 1 (best) BASIC11.55□□□□□ -0.56
PDE6DO43924 MYCN-202ENST00000638417 1693 ntTSL 2 BASIC11.55□□□□□ -0.56
PDE6DO43924 TBX3-202ENST00000349155 4723 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
PDE6DO43924 LPO-201ENST00000262290 2979 ntAPPRIS P3 TSL 1 (best) BASIC11.55□□□□□ -0.56
PDE6DO43924 RNF145-202ENST00000424310 3613 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
PDE6DO43924 RIOK1-202ENST00000379834 2810 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
PDE6DO43924 GRIN1-202ENST00000371546 4114 ntTSL 5 BASIC11.55□□□□□ -0.56
PDE6DO43924 PCDHB18P-202ENST00000526308 3197 ntBASIC11.55□□□□□ -0.56
PDE6DO43924 AC007388.1-204ENST00000449569 2517 ntTSL 2 BASIC11.55□□□□□ -0.56
PDE6DO43924 HMGA1-204ENST00000401473 1887 ntAPPRIS ALT1 TSL 1 (best) BASIC11.55□□□□□ -0.56
PDE6DO43924 TDRD5-201ENST00000294848 3525 ntAPPRIS P3 TSL 1 (best) BASIC11.55□□□□□ -0.56
PDE6DO43924 NR2C1-219ENST00000622476 1561 ntTSL 5 BASIC11.55□□□□□ -0.56
PDE6DO43924 SLC22A2-202ENST00000366953 2597 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
PDE6DO43924 GTF2I-215ENST00000614986 4415 ntAPPRIS ALT1 TSL 1 (best) BASIC11.55□□□□□ -0.56
PDE6DO43924 GTF2I-221ENST00000621734 4412 ntAPPRIS ALT2 TSL 1 (best) BASIC11.55□□□□□ -0.56
PDE6DO43924 ZMYND10-202ENST00000360165 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC11.55□□□□□ -0.56
PDE6DO43924 VWA8-201ENST00000281496 3475 ntTSL 1 (best) BASIC11.55□□□□□ -0.56
PDE6DO43924 SEMA6D-208ENST00000558014 6028 ntTSL 1 (best) BASIC11.55□□□□□ -0.56
PDE6DO43924 S100A14-201ENST00000344616 1058 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
PDE6DO43924 BEX3-204ENST00000372645 913 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
PDE6DO43924 OR5C1-201ENST00000373680 963 ntAPPRIS P1 BASIC11.55□□□□□ -0.56
PDE6DO43924 MRPL28-202ENST00000389675 865 ntAPPRIS P1 TSL 3 BASIC11.55□□□□□ -0.56
PDE6DO43924 NDUFA4L2-201ENST00000393825 1186 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
PDE6DO43924 AC008105.2-201ENST00000420431 579 ntTSL 4 BASIC11.55□□□□□ -0.56
PDE6DO43924 AL035541.1-201ENST00000424850 823 ntTSL 2 BASIC11.55□□□□□ -0.56
PDE6DO43924 THRB-AS1-202ENST00000438096 702 ntTSL 3 BASIC11.55□□□□□ -0.56
PDE6DO43924 AF186996.4-201ENST00000467186 377 ntBASIC11.55□□□□□ -0.56
PDE6DO43924 AC106771.1-201ENST00000502209 372 ntTSL 2 BASIC11.55□□□□□ -0.56
PDE6DO43924 RAB30-AS1-207ENST00000533708 825 ntTSL 2 BASIC11.55□□□□□ -0.56
PDE6DO43924 YEATS4-202ENST00000548020 1100 ntTSL 2 BASIC11.55□□□□□ -0.56
PDE6DO43924 NDUFA4L2-206ENST00000556732 883 ntTSL 3 BASIC11.55□□□□□ -0.56
PDE6DO43924 SPINT1-AS1-203ENST00000565315 629 ntTSL 2 BASIC11.55□□□□□ -0.56
PDE6DO43924 NDRG4-247ENST00000568640 1281 ntTSL 2 BASIC11.55□□□□□ -0.56
PDE6DO43924 AC012615.3-201ENST00000592884 500 ntTSL 3 BASIC11.55□□□□□ -0.56
PDE6DO43924 ALKBH7-203ENST00000599849 556 ntTSL 3 BASIC11.55□□□□□ -0.56
PDE6DO43924 AC098484.3-202ENST00000603943 1011 ntAPPRIS P5 TSL 5 BASIC11.55□□□□□ -0.56
PDE6DO43924 ANO2-212ENST00000612575 1087 ntTSL 1 (best) BASIC11.55□□□□□ -0.56
PDE6DO43924 AC005865.2-203ENST00000636557 2959 ntTSL 5 BASIC11.55□□□□□ -0.56
PDE6DO43924 AC004834.1-204ENST00000640670 1055 ntTSL 5 BASIC11.55□□□□□ -0.56
PDE6DO43924 CRTC2-202ENST00000368630 1635 ntTSL 2 BASIC11.55□□□□□ -0.56
PDE6DO43924 FOXF1-201ENST00000262426 3516 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
PDE6DO43924 KIRREL3-205ENST00000529097 3397 ntAPPRIS ALT2 TSL 1 (best) BASIC11.55□□□□□ -0.56
PDE6DO43924 SGMS1-202ENST00000361781 3744 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
PDE6DO43924 CYP2AB1P-202ENST00000454440 1456 ntBASIC11.55□□□□□ -0.56
PDE6DO43924 CBLB-204ENST00000405772 3237 ntTSL 2 BASIC11.55□□□□□ -0.56
PDE6DO43924 NOP58-201ENST00000264279 2046 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
PDE6DO43924 ARHGEF3-212ENST00000495373 2024 ntTSL 1 (best) BASIC11.55□□□□□ -0.56
PDE6DO43924 REM1-201ENST00000201979 1665 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
PDE6DO43924 DAZL-201ENST00000250863 3104 ntTSL 1 (best) BASIC11.55□□□□□ -0.56
PDE6DO43924 FAM83A-201ENST00000276699 1858 ntTSL 1 (best) BASIC11.55□□□□□ -0.56
PDE6DO43924 TUBA3E-201ENST00000312988 1542 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
PDE6DO43924 FAM189A2-201ENST00000257515 2423 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
PDE6DO43924 RCBTB2-205ENST00000544492 2622 ntTSL 2 BASIC11.55□□□□□ -0.56
PDE6DO43924 NPC1-201ENST00000269228 5157 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
PDE6DO43924 SLC13A5-202ENST00000381074 1738 ntTSL 2 BASIC11.55□□□□□ -0.56
PDE6DO43924 PI4KB-203ENST00000368874 3934 ntAPPRIS ALT1 TSL 1 (best) BASIC11.54□□□□□ -0.56
PDE6DO43924 ARHGEF26-202ENST00000465093 3929 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
PDE6DO43924 IKZF1-204ENST00000349824 5757 ntTSL 5 BASIC11.54□□□□□ -0.56
PDE6DO43924 AAR2-202ENST00000373932 2689 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
PDE6DO43924 GNL1-201ENST00000376621 7490 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
PDE6DO43924 TUBBP5-201ENST00000290377 1563 ntTSL 1 (best) BASIC11.54□□□□□ -0.56
PDE6DO43924 BAHCC1-201ENST00000307745 10342 ntAPPRIS ALT2 TSL 5 BASIC11.54□□□□□ -0.56
PDE6DO43924 SNHG18-201ENST00000508179 1799 ntTSL 2 BASIC11.54□□□□□ -0.56
PDE6DO43924 CTTN-202ENST00000346329 3272 ntAPPRIS P3 TSL 1 (best) BASIC11.54□□□□□ -0.56
PDE6DO43924 NCAPH2-201ENST00000299821 1996 ntAPPRIS ALT2 TSL 1 (best) BASIC11.54□□□□□ -0.56
PDE6DO43924 ZNF335-201ENST00000322927 4430 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
PDE6DO43924 AGBL2-205ENST00000528244 2929 ntAPPRIS ALT2 TSL 2 BASIC11.54□□□□□ -0.56
PDE6DO43924 ZHX2-201ENST00000314393 4624 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
PDE6DO43924 GFAP-201ENST00000253408 3135 ntTSL 5 BASIC11.54□□□□□ -0.56
PDE6DO43924 RGS22-201ENST00000360863 4296 ntAPPRIS P3 TSL 1 (best) BASIC11.54□□□□□ -0.56
PDE6DO43924 DCST2-202ENST00000368424 2392 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
PDE6DO43924 NKAIN4-202ENST00000370313 1421 ntTSL 3 BASIC11.54□□□□□ -0.56
PDE6DO43924 NR4A1-202ENST00000360284 2589 ntTSL 2 BASIC11.54□□□□□ -0.56
PDE6DO43924 TINF2-215ENST00000626689 1643 ntAPPRIS ALT2 TSL 5 BASIC11.54□□□□□ -0.56
PDE6DO43924 ZNF721-205ENST00000511833 2966 ntAPPRIS P1 TSL 4 BASIC11.54□□□□□ -0.56
PDE6DO43924 GAPVD1-205ENST00000394084 3190 ntTSL 1 (best) BASIC11.54□□□□□ -0.56
PDE6DO43924 ADAM33-207ENST00000619289 3195 ntTSL 1 (best) BASIC11.54□□□□□ -0.56
PDE6DO43924 CCT2-201ENST00000299300 2041 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
PDE6DO43924 TUBA8-202ENST00000330423 2018 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
PDE6DO43924 GNPNAT1-203ENST00000554230 2238 ntTSL 5 BASIC11.54□□□□□ -0.56
PDE6DO43924 WARS2-201ENST00000235521 2800 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
PDE6DO43924 C1QTNF1-204ENST00000392445 2833 ntAPPRIS P1 TSL 2 BASIC11.54□□□□□ -0.56
PDE6DO43924 ENG-204ENST00000480266 2804 ntAPPRIS ALT2 TSL 2 BASIC11.54□□□□□ -0.56
PDE6DO43924 PRRT2-201ENST00000300797 3002 ntTSL 2 BASIC11.54□□□□□ -0.56
PDE6DO43924 RNF220-203ENST00000361799 3009 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
PDE6DO43924 RNF220-204ENST00000372247 3010 ntAPPRIS P1 TSL 5 BASIC11.54□□□□□ -0.56
PDE6DO43924 SCAMP5-202ENST00000425597 3411 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
PDE6DO43924 GATAD2A-203ENST00000404158 5776 ntAPPRIS ALT1 TSL 2 BASIC11.54□□□□□ -0.56
PDE6DO43924 SLC8A2-203ENST00000542837 3603 ntTSL 2 BASIC11.54□□□□□ -0.56
PDE6DO43924 TM2D1-201ENST00000294613 1250 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
PDE6DO43924 NUDT4P1-201ENST00000322209 1206 ntAPPRIS P1 BASIC11.54□□□□□ -0.56
PDE6DO43924 TM2D1-204ENST00000371180 1248 ntTSL 5 BASIC11.54□□□□□ -0.56
PDE6DO43924 Z82198.1-201ENST00000447396 437 ntTSL 3 BASIC11.54□□□□□ -0.56
Retrieved 100 of 98,524 protein–RNA pairs in 37.7 ms