Protein–RNA interactions for Protein: O14529

CUX2, Homeobox protein cut-like 2, humanhuman

Predictions only

Length 1,486 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX2O14529 AL136982.5-201ENST00000605222 294 ntBASIC24.58■■□□□ 1.53
CUX2O14529 BX322562.1-201ENST00000617004 561 ntBASIC24.58■■□□□ 1.53
CUX2O14529 AC073869.4-201ENST00000620841 800 ntBASIC24.58■■□□□ 1.53
CUX2O14529 PAX6-237ENST00000638696 1203 ntTSL 5 BASIC24.58■■□□□ 1.53
CUX2O14529 PAX6-238ENST00000638755 1161 ntTSL 5 BASIC24.58■■□□□ 1.53
CUX2O14529 ZC2HC1C-201ENST00000238686 2249 ntTSL 5 BASIC24.58■■□□□ 1.53
CUX2O14529 KRT8P28-201ENST00000433288 1390 ntBASIC24.58■■□□□ 1.53
CUX2O14529 FOXH1-201ENST00000377317 2503 ntAPPRIS P1 TSL 1 (best) BASIC24.58■■□□□ 1.53
CUX2O14529 PSMC5-201ENST00000310144 1579 ntAPPRIS P1 TSL 1 (best) BASIC24.58■■□□□ 1.53
CUX2O14529 LSP1-204ENST00000406638 2640 ntAPPRIS ALT2 TSL 2 BASIC24.58■■□□□ 1.53
CUX2O14529 AP001781.3-201ENST00000622211 2939 ntAPPRIS P1 TSL 2 BASIC24.58■■□□□ 1.53
CUX2O14529 SLC25A35-202ENST00000577745 1860 ntAPPRIS P1 TSL 1 (best) BASIC24.58■■□□□ 1.53
CUX2O14529 LAMC3-202ENST00000361069 6133 ntAPPRIS P1 TSL 2 BASIC24.58■■□□□ 1.53
CUX2O14529 DLEU2-201ENST00000235290 1739 ntTSL 5 BASIC24.58■■□□□ 1.53
CUX2O14529 ZNF77-201ENST00000314531 2002 ntAPPRIS P1 TSL 1 (best) BASIC24.58■■□□□ 1.53
CUX2O14529 DMTN-223ENST00000523782 2235 ntAPPRIS P1 TSL 5 BASIC24.58■■□□□ 1.53
CUX2O14529 ZNF764-201ENST00000252797 2738 ntAPPRIS P3 TSL 1 (best) BASIC24.58■■□□□ 1.53
CUX2O14529 NOMO1-201ENST00000287667 4355 ntAPPRIS P2 TSL 1 (best) BASIC24.58■■□□□ 1.52
CUX2O14529 MAX-204ENST00000358402 1973 ntTSL 1 (best) BASIC24.58■■□□□ 1.52
CUX2O14529 SCLT1-209ENST00000511426 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC24.58■■□□□ 1.52
CUX2O14529 SMIM4-201ENST00000307106 274 ntTSL 2 BASIC24.58■■□□□ 1.52
CUX2O14529 OR7E115P-201ENST00000382617 1024 ntBASIC24.58■■□□□ 1.52
CUX2O14529 RIC3-205ENST00000425599 867 ntTSL 1 (best) BASIC24.58■■□□□ 1.52
CUX2O14529 AC004910.1-201ENST00000433493 787 ntBASIC24.58■■□□□ 1.52
CUX2O14529 AC078785.1-204ENST00000460707 764 ntTSL 3 BASIC24.58■■□□□ 1.52
CUX2O14529 CCNL2P1-201ENST00000512846 969 ntBASIC24.58■■□□□ 1.52
CUX2O14529 RN7SL480P-201ENST00000581481 294 ntBASIC24.58■■□□□ 1.52
CUX2O14529 C17orf62-234ENST00000584503 584 ntTSL 2 BASIC24.58■■□□□ 1.52
CUX2O14529 AC005777.1-201ENST00000588332 187 ntBASIC24.58■■□□□ 1.52
CUX2O14529 Metazoa_SRP.83-201ENST00000611762 320 ntBASIC24.58■■□□□ 1.52
CUX2O14529 Metazoa_SRP.37-201ENST00000617743 320 ntBASIC24.58■■□□□ 1.52
CUX2O14529 AL807740.1-201ENST00000636971 567 ntTSL 4 BASIC24.58■■□□□ 1.52
CUX2O14529 SMPD3-201ENST00000219334 5453 ntAPPRIS P1 TSL 1 (best) BASIC24.57■■□□□ 1.52
CUX2O14529 C11orf49-204ENST00000395460 1916 ntTSL 1 (best) BASIC24.57■■□□□ 1.52
CUX2O14529 CLIP2-201ENST00000223398 5563 ntAPPRIS P1 TSL 5 BASIC24.57■■□□□ 1.52
CUX2O14529 SNX27-204ENST00000458013 6403 ntAPPRIS ALT1 TSL 5 BASIC24.57■■□□□ 1.52
CUX2O14529 TRMT44-201ENST00000389737 2799 ntAPPRIS P2 TSL 5 BASIC24.57■■□□□ 1.52
CUX2O14529 ADGRA2-201ENST00000315215 6270 ntTSL 1 (best) BASIC24.57■■□□□ 1.52
CUX2O14529 SALL4P5-201ENST00000419001 1760 ntBASIC24.57■■□□□ 1.52
CUX2O14529 ALOX15-205ENST00000574640 2422 ntTSL 2 BASIC24.57■■□□□ 1.52
CUX2O14529 ZNF672-201ENST00000306562 2989 ntAPPRIS P1 TSL 1 (best) BASIC24.57■■□□□ 1.52
CUX2O14529 MSTO1-202ENST00000368341 2245 ntTSL 2 BASIC24.57■■□□□ 1.52
CUX2O14529 MLF1-216ENST00000618075 2116 ntTSL 5 BASIC24.57■■□□□ 1.52
CUX2O14529 PYCR3-201ENST00000220966 2678 ntAPPRIS P2 TSL 1 (best) BASIC24.57■■□□□ 1.52
CUX2O14529 FDFT1-214ENST00000528812 2013 ntTSL 2 BASIC24.57■■□□□ 1.52
CUX2O14529 SYTL2-215ENST00000527523 3049 ntTSL 2 BASIC24.57■■□□□ 1.52
CUX2O14529 AC009237.3-202ENST00000608013 3042 ntTSL 1 (best) BASIC24.57■■□□□ 1.52
CUX2O14529 FTHL17-201ENST00000359202 813 ntAPPRIS P1 BASIC24.57■■□□□ 1.52
CUX2O14529 SUMO1-202ENST00000392245 1071 ntAPPRIS P1 TSL 3 BASIC24.57■■□□□ 1.52
CUX2O14529 SKA1-202ENST00000398452 979 ntAPPRIS P1 TSL 1 (best) BASIC24.57■■□□□ 1.52
CUX2O14529 KRTAP10-5-201ENST00000400372 1150 ntAPPRIS P1 BASIC24.57■■□□□ 1.52
CUX2O14529 AL591242.1-201ENST00000422284 343 ntTSL 2 BASIC24.57■■□□□ 1.52
CUX2O14529 TPT1P11-201ENST00000458482 498 ntBASIC24.57■■□□□ 1.52
CUX2O14529 AC007679.1-201ENST00000458609 502 ntBASIC24.57■■□□□ 1.52
CUX2O14529 RN7SL478P-201ENST00000584358 298 ntBASIC24.57■■□□□ 1.52
CUX2O14529 CCDC32-215ENST00000625629 801 ntTSL 5 BASIC24.57■■□□□ 1.52
CUX2O14529 CNOT6-201ENST00000261951 6176 ntAPPRIS P1 TSL 5 BASIC24.57■■□□□ 1.52
CUX2O14529 EIF4H-202ENST00000353999 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC24.57■■□□□ 1.52
CUX2O14529 VPS54-201ENST00000272322 3463 ntAPPRIS P3 TSL 5 BASIC24.56■■□□□ 1.52
CUX2O14529 HORMAD1-201ENST00000322343 1771 ntTSL 1 (best) BASIC24.56■■□□□ 1.52
CUX2O14529 BCL2-203ENST00000589955 5011 ntBASIC24.56■■□□□ 1.52
CUX2O14529 ACSM2B-207ENST00000565232 2322 ntAPPRIS P1 TSL 2 BASIC24.56■■□□□ 1.52
CUX2O14529 TTC23L-203ENST00000505624 1353 ntAPPRIS P2 TSL 1 (best) BASIC24.56■■□□□ 1.52
CUX2O14529 CLUAP1-201ENST00000341633 1643 ntTSL 5 BASIC24.56■■□□□ 1.52
CUX2O14529 CRK-202ENST00000398970 3675 ntTSL 1 (best) BASIC24.56■■□□□ 1.52
CUX2O14529 PITPNA-201ENST00000313486 3912 ntAPPRIS P2 TSL 5 BASIC24.56■■□□□ 1.52
CUX2O14529 LINC00665-203ENST00000438368 1863 ntTSL 5 BASIC24.56■■□□□ 1.52
CUX2O14529 FLT1-207ENST00000615840 6453 ntTSL 1 (best) BASIC24.56■■□□□ 1.52
CUX2O14529 LINC02449-201ENST00000304751 795 ntTSL 1 (best) BASIC24.56■■□□□ 1.52
CUX2O14529 VGLL1-201ENST00000370634 1215 ntAPPRIS P1 TSL 1 (best) BASIC24.56■■□□□ 1.52
CUX2O14529 ZNF877P-201ENST00000437614 612 ntBASIC24.56■■□□□ 1.52
CUX2O14529 PARD3B-206ENST00000462231 2968 ntTSL 1 (best) BASIC24.56■■□□□ 1.52
CUX2O14529 FAM3D-AS1-201ENST00000464125 821 ntTSL 3 BASIC24.56■■□□□ 1.52
CUX2O14529 CAP2-207ENST00000493172 861 ntTSL 2 BASIC24.56■■□□□ 1.52
CUX2O14529 LINC00301-203ENST00000527161 749 ntTSL 2 BASIC24.56■■□□□ 1.52
CUX2O14529 AP003043.1-201ENST00000527804 547 ntTSL 4 BASIC24.56■■□□□ 1.52
CUX2O14529 RPAIN-205ENST00000536255 1057 ntTSL 1 (best) BASIC24.56■■□□□ 1.52
CUX2O14529 AL162231.1-205ENST00000544078 338 ntAPPRIS P2 TSL 2 BASIC24.56■■□□□ 1.52
CUX2O14529 JKAMP-207ENST00000554271 2137 ntTSL 2 BASIC24.56■■□□□ 1.52
CUX2O14529 EMP3-204ENST00000596315 761 ntTSL 2 BASIC24.56■■□□□ 1.52
CUX2O14529 PAX8-AS1-219ENST00000623306 840 ntTSL 5 BASIC24.56■■□□□ 1.52
CUX2O14529 AC010531.8-201ENST00000623341 685 ntBASIC24.56■■□□□ 1.52
CUX2O14529 TMC4-210ENST00000619895 2373 ntAPPRIS P3 TSL 1 (best) BASIC24.56■■□□□ 1.52
CUX2O14529 FAM86B1-216ENST00000533852 2043 ntAPPRIS ALT2 TSL 5 BASIC24.56■■□□□ 1.52
CUX2O14529 SEMA4F-201ENST00000339773 2177 ntTSL 1 (best) BASIC24.56■■□□□ 1.52
CUX2O14529 SCUBE2-202ENST00000450649 2912 ntTSL 1 (best) BASIC24.56■■□□□ 1.52
CUX2O14529 PIGT-202ENST00000279036 2245 ntAPPRIS P1 TSL 1 (best) BASIC24.55■■□□□ 1.52
CUX2O14529 NOMO2-212ENST00000622306 4252 ntAPPRIS P3 TSL 1 (best) BASIC24.55■■□□□ 1.52
CUX2O14529 RHOH-218ENST00000613272 1865 ntAPPRIS P1 TSL 3 BASIC24.55■■□□□ 1.52
CUX2O14529 RREB1-201ENST00000334984 5789 ntAPPRIS ALT2 TSL 1 (best) BASIC24.55■■□□□ 1.52
CUX2O14529 KIAA1586-201ENST00000370733 2933 ntAPPRIS P1 TSL 1 (best) BASIC24.55■■□□□ 1.52
CUX2O14529 NOMO2-201ENST00000330537 4352 ntAPPRIS ALT2 TSL 5 BASIC24.55■■□□□ 1.52
CUX2O14529 SLC35G3-201ENST00000297307 2004 ntAPPRIS P1 BASIC24.55■■□□□ 1.52
CUX2O14529 LINC00200-201ENST00000425630 2434 ntTSL 1 (best) BASIC24.55■■□□□ 1.52
CUX2O14529 ANKRD44-203ENST00000409153 2724 ntTSL 2 BASIC24.55■■□□□ 1.52
CUX2O14529 ZNF707-223ENST00000532205 2865 ntAPPRIS P1 TSL 2 BASIC24.55■■□□□ 1.52
CUX2O14529 RAB37-216ENST00000613645 1653 ntAPPRIS ALT1 TSL 1 (best) BASIC24.55■■□□□ 1.52
CUX2O14529 C11orf53-201ENST00000280325 1208 ntAPPRIS P1 TSL 5 BASIC24.55■■□□□ 1.52
CUX2O14529 MED11-201ENST00000293777 833 ntAPPRIS P1 TSL 1 (best) BASIC24.55■■□□□ 1.52
CUX2O14529 FAM21EP-201ENST00000417804 985 ntBASIC24.55■■□□□ 1.52
Retrieved 100 of 98,524 protein–RNA pairs in 64.9 ms