Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 TRAF6-201ENST00000348124 2558 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
VPS9D1Q9Y2B5 GRM7-215ENST00000486284 4241 ntAPPRIS ALT2 TSL 5 BASIC14.91□□□□□ -0.02
VPS9D1Q9Y2B5 KHK-201ENST00000260598 2397 ntAPPRIS P5 TSL 2 BASIC14.91□□□□□ -0.02
VPS9D1Q9Y2B5 API5-203ENST00000455725 2257 ntTSL 2 BASIC14.91□□□□□ -0.02
VPS9D1Q9Y2B5 TLL1-201ENST00000061240 6708 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
VPS9D1Q9Y2B5 TFAP2A-213ENST00000482890 2071 ntAPPRIS P3 TSL 5 BASIC14.91□□□□□ -0.02
VPS9D1Q9Y2B5 TMEM132E-203ENST00000631683 4379 ntAPPRIS P2 TSL 5 BASIC14.91□□□□□ -0.02
VPS9D1Q9Y2B5 ZNF324-201ENST00000196482 3000 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
VPS9D1Q9Y2B5 TPM3-205ENST00000328159 1771 ntTSL 2 BASIC14.91□□□□□ -0.02
VPS9D1Q9Y2B5 TRMT11-201ENST00000334379 1565 ntAPPRIS P2 TSL 1 (best) BASIC14.91□□□□□ -0.02
VPS9D1Q9Y2B5 CCT4-201ENST00000394440 2520 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
VPS9D1Q9Y2B5 NAA60-229ENST00000575076 2531 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
VPS9D1Q9Y2B5 AC123912.2-201ENST00000594927 2409 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
VPS9D1Q9Y2B5 NPY5R-203ENST00000515560 3183 ntAPPRIS P1 TSL 2 BASIC14.91□□□□□ -0.02
VPS9D1Q9Y2B5 BCAR1-207ENST00000538440 3192 ntAPPRIS ALT2 TSL 2 BASIC14.91□□□□□ -0.02
VPS9D1Q9Y2B5 RPL39L-201ENST00000296277 756 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
VPS9D1Q9Y2B5 OR10H1-201ENST00000334920 1124 ntAPPRIS P1 BASIC14.91□□□□□ -0.02
VPS9D1Q9Y2B5 FAM149A-202ENST00000356371 2997 ntAPPRIS ALT2 TSL 5 BASIC14.91□□□□□ -0.02
VPS9D1Q9Y2B5 AC012358.3-203ENST00000366287 1110 ntTSL 3 BASIC14.91□□□□□ -0.02
VPS9D1Q9Y2B5 TEX26-AS1-201ENST00000411835 1203 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
VPS9D1Q9Y2B5 BAATP1-201ENST00000412284 1225 ntBASIC14.91□□□□□ -0.02
VPS9D1Q9Y2B5 AC012441.1-201ENST00000446669 685 ntBASIC14.91□□□□□ -0.02
VPS9D1Q9Y2B5 TMEM191A-209ENST00000452055 788 ntTSL 2 BASIC14.91□□□□□ -0.02
VPS9D1Q9Y2B5 AL606760.2-202ENST00000452466 524 ntTSL 5 BASIC14.91□□□□□ -0.02
VPS9D1Q9Y2B5 PSEN2-206ENST00000472139 1163 ntTSL 5 BASIC14.91□□□□□ -0.02
VPS9D1Q9Y2B5 LINC01585-201ENST00000500496 1295 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
VPS9D1Q9Y2B5 SERF1A-205ENST00000507348 663 ntTSL 2 BASIC14.91□□□□□ -0.02
VPS9D1Q9Y2B5 IL32-222ENST00000533097 814 ntAPPRIS P4 TSL 2 BASIC14.91□□□□□ -0.02
VPS9D1Q9Y2B5 BCAR3-210ENST00000539242 2114 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
VPS9D1Q9Y2B5 AC005342.2-201ENST00000544163 315 ntTSL 3 BASIC14.91□□□□□ -0.02
VPS9D1Q9Y2B5 AC007610.2-201ENST00000566770 666 ntTSL 3 BASIC14.91□□□□□ -0.02
VPS9D1Q9Y2B5 AC004477.1-202ENST00000584428 539 ntTSL 2 BASIC14.91□□□□□ -0.02
VPS9D1Q9Y2B5 AC008805.2-201ENST00000590069 435 ntTSL 5 BASIC14.91□□□□□ -0.02
VPS9D1Q9Y2B5 DKKL1-202ENST00000594268 524 ntAPPRIS ALT2 TSL 2 BASIC14.91□□□□□ -0.02
VPS9D1Q9Y2B5 AC092364.2-202ENST00000597012 1073 ntBASIC14.91□□□□□ -0.02
VPS9D1Q9Y2B5 SMIM22-211ENST00000615889 1047 ntAPPRIS P4 TSL 5 BASIC14.91□□□□□ -0.02
VPS9D1Q9Y2B5 IL32-201ENST00000008180 1056 ntAPPRIS ALT2 TSL 2 BASIC14.91□□□□□ -0.02
VPS9D1Q9Y2B5 UBC-205ENST00000536769 3745 ntAPPRIS P1 BASIC14.91□□□□□ -0.02
VPS9D1Q9Y2B5 MVB12B-206ENST00000489637 2666 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
VPS9D1Q9Y2B5 PNMA1-201ENST00000316836 2590 ntAPPRIS P1 BASIC14.91□□□□□ -0.02
VPS9D1Q9Y2B5 RNF157-AS1-204ENST00000590137 1812 ntTSL 2 BASIC14.91□□□□□ -0.02
VPS9D1Q9Y2B5 SELPLG-201ENST00000228463 1704 ntAPPRIS ALT2 TSL 2 BASIC14.91□□□□□ -0.02
VPS9D1Q9Y2B5 OGDH-204ENST00000443864 1744 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
VPS9D1Q9Y2B5 WASH2P-202ENST00000538033 2800 ntTSL 2 BASIC14.91□□□□□ -0.02
VPS9D1Q9Y2B5 TOMM34-201ENST00000372813 2062 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
VPS9D1Q9Y2B5 ZNF664-202ENST00000392404 4262 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
VPS9D1Q9Y2B5 AL117378.2-201ENST00000622916 1337 ntBASIC14.91□□□□□ -0.02
VPS9D1Q9Y2B5 RSPO1-204ENST00000615459 2331 ntTSL 2 BASIC14.91□□□□□ -0.02
VPS9D1Q9Y2B5 AIFM2-204ENST00000613322 3247 ntAPPRIS P1 TSL 5 BASIC14.9□□□□□ -0.02
VPS9D1Q9Y2B5 SCFD2-201ENST00000388940 2221 ntTSL 2 BASIC14.9□□□□□ -0.02
VPS9D1Q9Y2B5 AC005089.1-201ENST00000619486 2241 ntBASIC14.9□□□□□ -0.02
VPS9D1Q9Y2B5 LETMD1-206ENST00000547008 1665 ntTSL 2 BASIC14.9□□□□□ -0.02
VPS9D1Q9Y2B5 TPD52-201ENST00000379096 4041 ntAPPRIS ALT1 TSL 1 (best) BASIC14.9□□□□□ -0.02
VPS9D1Q9Y2B5 PLAT-205ENST00000519510 2030 ntTSL 5 BASIC14.9□□□□□ -0.02
VPS9D1Q9Y2B5 SAFB-205ENST00000588852 2842 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
VPS9D1Q9Y2B5 SH3KBP1-201ENST00000379697 1944 ntTSL 5 BASIC14.9□□□□□ -0.02
VPS9D1Q9Y2B5 BBS1-225ENST00000630659 1934 ntTSL 5 BASIC14.9□□□□□ -0.02
VPS9D1Q9Y2B5 GLG1-203ENST00000447066 3626 ntAPPRIS ALT2 TSL 2 BASIC14.9□□□□□ -0.02
VPS9D1Q9Y2B5 FAM32A-201ENST00000263384 1455 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
VPS9D1Q9Y2B5 KREMEN1-201ENST00000327813 2719 ntAPPRIS P3 TSL 2 BASIC14.9□□□□□ -0.02
VPS9D1Q9Y2B5 FCHO1-206ENST00000594202 3214 ntTSL 5 BASIC14.9□□□□□ -0.02
VPS9D1Q9Y2B5 ROCK1-201ENST00000399799 9484 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
VPS9D1Q9Y2B5 YBEY-202ENST00000339195 890 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
VPS9D1Q9Y2B5 YBEY-203ENST00000397691 764 ntAPPRIS P1 TSL 3 BASIC14.9□□□□□ -0.02
VPS9D1Q9Y2B5 DGCR5-201ENST00000399539 862 ntBASIC14.9□□□□□ -0.02
VPS9D1Q9Y2B5 AC099552.2-201ENST00000418523 456 ntTSL 3 BASIC14.9□□□□□ -0.02
VPS9D1Q9Y2B5 AC245100.3-201ENST00000441281 285 ntBASIC14.9□□□□□ -0.02
VPS9D1Q9Y2B5 TGFA-205ENST00000444975 985 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
VPS9D1Q9Y2B5 TMEM176B-206ENST00000492607 1265 ntAPPRIS P1 TSL 5 BASIC14.9□□□□□ -0.02
VPS9D1Q9Y2B5 LINC01336-201ENST00000503568 534 ntTSL 4 BASIC14.9□□□□□ -0.02
VPS9D1Q9Y2B5 RNF139-AS1-202ENST00000519861 359 ntTSL 3 BASIC14.9□□□□□ -0.02
VPS9D1Q9Y2B5 GNLY-210ENST00000524600 750 ntAPPRIS ALT2 TSL 2 BASIC14.9□□□□□ -0.02
VPS9D1Q9Y2B5 ACRV1-202ENST00000527795 782 ntAPPRIS ALT2 TSL 2 BASIC14.9□□□□□ -0.02
VPS9D1Q9Y2B5 IFITM2-204ENST00000533141 588 ntAPPRIS ALT2 TSL 4 BASIC14.9□□□□□ -0.02
VPS9D1Q9Y2B5 AP000944.1-201ENST00000533886 564 ntTSL 4 BASIC14.9□□□□□ -0.02
VPS9D1Q9Y2B5 AC084756.1-201ENST00000558237 606 ntTSL 5 BASIC14.9□□□□□ -0.02
VPS9D1Q9Y2B5 RN7SL48P-201ENST00000579283 293 ntBASIC14.9□□□□□ -0.02
VPS9D1Q9Y2B5 PTPRS-208ENST00000590509 893 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
VPS9D1Q9Y2B5 SNHG8-201ENST00000602414 672 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
VPS9D1Q9Y2B5 SNHG8-205ENST00000602819 470 ntTSL 2 BASIC14.9□□□□□ -0.02
VPS9D1Q9Y2B5 GABPB1-202ENST00000359031 1633 ntTSL 5 BASIC14.9□□□□□ -0.02
VPS9D1Q9Y2B5 CSGALNACT1-211ENST00000522854 1990 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
VPS9D1Q9Y2B5 CNOT9-208ENST00000542068 3259 ntAPPRIS P1 TSL 5 BASIC14.9□□□□□ -0.02
VPS9D1Q9Y2B5 YTHDF3-205ENST00000539294 5163 ntAPPRIS P2 TSL 1 (best) BASIC14.9□□□□□ -0.02
VPS9D1Q9Y2B5 ARVCF-202ENST00000401994 2700 ntTSL 5 BASIC14.9□□□□□ -0.02
VPS9D1Q9Y2B5 NEK10-206ENST00000429845 4250 ntAPPRIS P1 TSL 5 BASIC14.9□□□□□ -0.02
VPS9D1Q9Y2B5 SLC25A27-201ENST00000371347 2963 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
VPS9D1Q9Y2B5 AC007191.1-201ENST00000623179 2995 ntBASIC14.9□□□□□ -0.02
VPS9D1Q9Y2B5 ZBED1-202ENST00000381222 4507 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
VPS9D1Q9Y2B5 FKBP5-203ENST00000539068 3827 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
VPS9D1Q9Y2B5 ENO3-206ENST00000519584 1322 ntTSL 2 BASIC14.9□□□□□ -0.02
VPS9D1Q9Y2B5 WWC2-201ENST00000403733 8826 ntAPPRIS P1 TSL 5 BASIC14.9□□□□□ -0.02
VPS9D1Q9Y2B5 HNRNPR-212ENST00000606561 1837 ntTSL 2 BASIC14.89□□□□□ -0.03
VPS9D1Q9Y2B5 JPH4-201ENST00000356300 4278 ntAPPRIS P2 TSL 1 (best) BASIC14.89□□□□□ -0.03
VPS9D1Q9Y2B5 ATG5-201ENST00000343245 3092 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
VPS9D1Q9Y2B5 CNKSR2-203ENST00000425654 5668 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
VPS9D1Q9Y2B5 SAPCD2-201ENST00000409687 3848 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
VPS9D1Q9Y2B5 BHMG1-201ENST00000457052 2749 ntAPPRIS P1 TSL 5 BASIC14.89□□□□□ -0.03
VPS9D1Q9Y2B5 CNDP2-201ENST00000324262 5130 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
VPS9D1Q9Y2B5 PLXNB1-204ENST00000456774 5859 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 80.5 ms