Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 ARVCF-201ENST00000263207 4041 ntAPPRIS P2 TSL 1 (best) BASIC27.83■■■□□ 2.05
SHROOM4Q9ULL8 MAEL-202ENST00000367872 1908 ntAPPRIS P1 TSL 1 (best) BASIC27.83■■■□□ 2.05
SHROOM4Q9ULL8 TMEM57-202ENST00000399766 3294 ntTSL 1 (best) BASIC27.83■■■□□ 2.05
SHROOM4Q9ULL8 C14orf79-205ENST00000549240 2503 ntAPPRIS ALT2 TSL 2 BASIC27.83■■■□□ 2.05
SHROOM4Q9ULL8 SERPINB9P1-202ENST00000545177 1375 ntTSL 3 BASIC27.83■■■□□ 2.05
SHROOM4Q9ULL8 FH-201ENST00000366560 1797 ntAPPRIS P1 TSL 1 (best) BASIC27.83■■■□□ 2.05
SHROOM4Q9ULL8 TBXAS1-201ENST00000336425 2185 ntAPPRIS P1 TSL 1 (best) BASIC27.83■■■□□ 2.05
SHROOM4Q9ULL8 CNOT10-202ENST00000331889 2573 ntTSL 1 (best) BASIC27.83■■■□□ 2.05
SHROOM4Q9ULL8 SLC17A9-201ENST00000370349 2594 ntAPPRIS ALT2 TSL 1 (best) BASIC27.83■■■□□ 2.05
SHROOM4Q9ULL8 NOP2-222ENST00000617555 2017 ntTSL 5 BASIC27.83■■■□□ 2.05
SHROOM4Q9ULL8 ANXA6-215ENST00000523714 2451 ntTSL 2 BASIC27.83■■■□□ 2.05
SHROOM4Q9ULL8 TOMM20L-201ENST00000360945 620 ntAPPRIS P1 TSL 1 (best) BASIC27.83■■■□□ 2.04
SHROOM4Q9ULL8 NCR3-204ENST00000376073 1097 ntAPPRIS ALT2 TSL 1 (best) BASIC27.83■■■□□ 2.04
SHROOM4Q9ULL8 AL606748.1-201ENST00000423919 655 ntTSL 3 BASIC27.83■■■□□ 2.04
SHROOM4Q9ULL8 AC105390.1-201ENST00000511330 560 ntTSL 4 BASIC27.83■■■□□ 2.04
SHROOM4Q9ULL8 PDP1-203ENST00000517764 2140 ntAPPRIS P3 TSL 2 BASIC27.83■■■□□ 2.04
SHROOM4Q9ULL8 TMEM126A-203ENST00000528105 656 ntTSL 2 BASIC27.83■■■□□ 2.04
SHROOM4Q9ULL8 AP000911.2-201ENST00000534330 502 ntBASIC27.83■■■□□ 2.04
SHROOM4Q9ULL8 SLC25A21-203ENST00000555449 1023 ntAPPRIS ALT1 TSL 2 BASIC27.83■■■□□ 2.04
SHROOM4Q9ULL8 AC009560.1-201ENST00000620208 434 ntBASIC27.83■■■□□ 2.04
SHROOM4Q9ULL8 GSN-215ENST00000545652 2428 ntTSL 2 BASIC27.82■■■□□ 2.04
SHROOM4Q9ULL8 ZNF436-AS1-201ENST00000335648 2547 ntBASIC27.82■■■□□ 2.04
SHROOM4Q9ULL8 AC058822.1-201ENST00000507166 2550 ntAPPRIS P1 TSL 2 BASIC27.82■■■□□ 2.04
SHROOM4Q9ULL8 CYP4X1-201ENST00000371901 2357 ntAPPRIS P1 TSL 1 (best) BASIC27.82■■■□□ 2.04
SHROOM4Q9ULL8 ACOT7-210ENST00000608083 1403 ntAPPRIS ALT2 TSL 1 (best) BASIC27.82■■■□□ 2.04
SHROOM4Q9ULL8 CYP4F11-202ENST00000326742 2877 ntTSL 1 (best) BASIC27.82■■■□□ 2.04
SHROOM4Q9ULL8 GHR-201ENST00000230882 4560 ntAPPRIS P1 TSL 1 (best) BASIC27.82■■■□□ 2.04
SHROOM4Q9ULL8 SH3BP5-206ENST00000426925 2190 ntTSL 2 BASIC27.82■■■□□ 2.04
SHROOM4Q9ULL8 IL3RA-201ENST00000331035 1706 ntAPPRIS P1 TSL 1 (best) BASIC27.82■■■□□ 2.04
SHROOM4Q9ULL8 DUSP18-201ENST00000334679 2479 ntAPPRIS P1 TSL 1 (best) BASIC27.82■■■□□ 2.04
SHROOM4Q9ULL8 SDHAF2-201ENST00000301761 2033 ntAPPRIS P1 TSL 1 (best) BASIC27.82■■■□□ 2.04
SHROOM4Q9ULL8 DEPDC7-201ENST00000241051 1755 ntAPPRIS P1 TSL 1 (best) BASIC27.82■■■□□ 2.04
SHROOM4Q9ULL8 PDCD5-202ENST00000379316 154 ntTSL 1 (best) BASIC27.82■■■□□ 2.04
SHROOM4Q9ULL8 AC106047.1-202ENST00000467484 482 ntTSL 2 BASIC27.82■■■□□ 2.04
SHROOM4Q9ULL8 LINC01598-205ENST00000508763 719 ntTSL 5 BASIC27.82■■■□□ 2.04
SHROOM4Q9ULL8 MIR4472-1-201ENST00000584349 80 ntBASIC27.82■■■□□ 2.04
SHROOM4Q9ULL8 HKR1-225ENST00000592168 566 ntTSL 4 BASIC27.82■■■□□ 2.04
SHROOM4Q9ULL8 PDCD5-208ENST00000592786 468 ntTSL 3 BASIC27.82■■■□□ 2.04
SHROOM4Q9ULL8 AC011247.3-201ENST00000603297 438 ntBASIC27.82■■■□□ 2.04
SHROOM4Q9ULL8 MYEF2-215ENST00000610570 2591 ntTSL 5 BASIC27.82■■■□□ 2.04
SHROOM4Q9ULL8 SF3B4-201ENST00000271628 2085 ntAPPRIS P1 TSL 1 (best) BASIC27.82■■■□□ 2.04
SHROOM4Q9ULL8 STK26-204ENST00000481105 1835 ntTSL 2 BASIC27.82■■■□□ 2.04
SHROOM4Q9ULL8 DDIAS-203ENST00000525361 1830 ntAPPRIS ALT2 TSL 2 BASIC27.82■■■□□ 2.04
SHROOM4Q9ULL8 SNCAIP-207ENST00000504884 1885 ntTSL 1 (best) BASIC27.81■■■□□ 2.04
SHROOM4Q9ULL8 ARHGEF1-204ENST00000378152 2986 ntTSL 1 (best) BASIC27.81■■■□□ 2.04
SHROOM4Q9ULL8 CSF2RA-219ENST00000501036 1622 ntTSL 2 BASIC27.81■■■□□ 2.04
SHROOM4Q9ULL8 LINC02021-201ENST00000504808 1608 ntTSL 3 BASIC27.81■■■□□ 2.04
SHROOM4Q9ULL8 FRS2-206ENST00000549921 1952 ntAPPRIS P1 TSL 1 (best) BASIC27.81■■■□□ 2.04
SHROOM4Q9ULL8 TMTC1-206ENST00000551659 4228 ntAPPRIS ALT2 TSL 5 BASIC27.81■■■□□ 2.04
SHROOM4Q9ULL8 NDUFA11-202ENST00000418389 2406 ntTSL 2 BASIC27.81■■■□□ 2.04
SHROOM4Q9ULL8 LDLRAD4-205ENST00000585931 2118 ntTSL 1 (best) BASIC27.81■■■□□ 2.04
SHROOM4Q9ULL8 ASGR1-201ENST00000269299 1504 ntAPPRIS P1 TSL 1 (best) BASIC27.81■■■□□ 2.04
SHROOM4Q9ULL8 LINGO1-201ENST00000355300 3055 ntAPPRIS P1 TSL 1 (best) BASIC27.81■■■□□ 2.04
SHROOM4Q9ULL8 TMEM115-201ENST00000266025 2197 ntAPPRIS P1 TSL 1 (best) BASIC27.81■■■□□ 2.04
SHROOM4Q9ULL8 TDRP-205ENST00000613071 3421 ntAPPRIS P1 TSL 3 BASIC27.81■■■□□ 2.04
SHROOM4Q9ULL8 LINC01101-201ENST00000622953 1884 ntBASIC27.81■■■□□ 2.04
SHROOM4Q9ULL8 POLR2L-201ENST00000322028 892 ntAPPRIS P1 TSL 1 (best) BASIC27.81■■■□□ 2.04
SHROOM4Q9ULL8 MBP-201ENST00000354542 575 ntTSL 2 BASIC27.81■■■□□ 2.04
SHROOM4Q9ULL8 HIGD1A-203ENST00000430190 741 ntTSL 2 BASIC27.81■■■□□ 2.04
SHROOM4Q9ULL8 BX276092.5-201ENST00000439926 886 ntTSL 5 BASIC27.81■■■□□ 2.04
SHROOM4Q9ULL8 IFITM1-204ENST00000528780 730 ntAPPRIS P1 TSL 3 BASIC27.81■■■□□ 2.04
SHROOM4Q9ULL8 AP005131.2-201ENST00000589045 487 ntTSL 2 BASIC27.81■■■□□ 2.04
SHROOM4Q9ULL8 HIST1H3F-201ENST00000618052 411 ntAPPRIS P1 BASIC27.81■■■□□ 2.04
SHROOM4Q9ULL8 DDX5-235ENST00000630471 473 ntTSL 4 BASIC27.81■■■□□ 2.04
SHROOM4Q9ULL8 ZBED1P1-201ENST00000502364 1930 ntBASIC27.81■■■□□ 2.04
SHROOM4Q9ULL8 NFYA-202ENST00000353205 1660 ntTSL 5 BASIC27.81■■■□□ 2.04
SHROOM4Q9ULL8 LINC00334-203ENST00000638500 1377 ntTSL 5 BASIC27.81■■■□□ 2.04
SHROOM4Q9ULL8 CRAT-201ENST00000318080 2763 ntAPPRIS P1 TSL 1 (best) BASIC27.81■■■□□ 2.04
SHROOM4Q9ULL8 PDE3B-201ENST00000282096 6076 ntAPPRIS P2 TSL 1 (best) BASIC27.8■■■□□ 2.04
SHROOM4Q9ULL8 JKAMP-202ENST00000356057 2524 ntTSL 1 (best) BASIC27.8■■■□□ 2.04
SHROOM4Q9ULL8 CACNA2D3-201ENST00000288197 3671 ntAPPRIS ALT2 TSL 1 (best) BASIC27.8■■■□□ 2.04
SHROOM4Q9ULL8 CACNA2D3-206ENST00000474759 3675 ntAPPRIS P2 TSL 1 (best) BASIC27.8■■■□□ 2.04
SHROOM4Q9ULL8 EDA-204ENST00000374553 5272 ntAPPRIS ALT1 TSL 1 (best) BASIC27.8■■■□□ 2.04
SHROOM4Q9ULL8 HEY1-202ENST00000354724 2293 ntAPPRIS P3 TSL 1 (best) BASIC27.8■■■□□ 2.04
SHROOM4Q9ULL8 EID1-201ENST00000530028 2298 ntAPPRIS P1 BASIC27.8■■■□□ 2.04
SHROOM4Q9ULL8 AP000552.1-203ENST00000416615 1930 ntTSL 5 BASIC27.8■■■□□ 2.04
SHROOM4Q9ULL8 CYP4F22-202ENST00000601005 2445 ntAPPRIS P1 TSL 5 BASIC27.8■■■□□ 2.04
SHROOM4Q9ULL8 TOM1L2-205ENST00000478943 2098 ntTSL 2 BASIC27.8■■■□□ 2.04
SHROOM4Q9ULL8 UBA6-202ENST00000420827 1664 ntTSL 1 (best) BASIC27.8■■■□□ 2.04
SHROOM4Q9ULL8 SPIN2B-203ENST00000374910 725 ntTSL 3 BASIC27.8■■■□□ 2.04
SHROOM4Q9ULL8 LINC00634-202ENST00000505157 222 ntBASIC27.8■■■□□ 2.04
SHROOM4Q9ULL8 ZNF302-207ENST00000505365 2955 ntTSL 2 BASIC27.8■■■□□ 2.04
SHROOM4Q9ULL8 AP001184.1-201ENST00000637936 376 ntBASIC27.8■■■□□ 2.04
SHROOM4Q9ULL8 SIDT1-202ENST00000393830 2572 ntTSL 1 (best) BASIC27.8■■■□□ 2.04
SHROOM4Q9ULL8 SCYL1-214ENST00000533862 2570 ntTSL 5 BASIC27.8■■■□□ 2.04
SHROOM4Q9ULL8 FUT3-209ENST00000589918 2182 ntAPPRIS P1 TSL 1 (best) BASIC27.8■■■□□ 2.04
SHROOM4Q9ULL8 PDGFRL-201ENST00000251630 1901 ntAPPRIS P1 TSL 5 BASIC27.8■■■□□ 2.04
SHROOM4Q9ULL8 KRT85-201ENST00000257901 2447 ntAPPRIS P1 TSL 1 (best) BASIC27.8■■■□□ 2.04
SHROOM4Q9ULL8 ACTL7A-201ENST00000333999 1494 ntAPPRIS P1 BASIC27.8■■■□□ 2.04
SHROOM4Q9ULL8 GPD2-208ENST00000438166 2457 ntAPPRIS P1 TSL 1 (best) BASIC27.8■■■□□ 2.04
SHROOM4Q9ULL8 VSX2-201ENST00000261980 2995 ntAPPRIS P1 TSL 1 (best) BASIC27.8■■■□□ 2.04
SHROOM4Q9ULL8 LINC00472-203ENST00000426635 2958 ntTSL 2 BASIC27.8■■■□□ 2.04
SHROOM4Q9ULL8 ENDOU-203ENST00000545824 1513 ntTSL 2 BASIC27.8■■■□□ 2.04
SHROOM4Q9ULL8 TOR4A-201ENST00000357503 4148 ntAPPRIS P1 TSL 2 BASIC27.79■■■□□ 2.04
SHROOM4Q9ULL8 RNF31-201ENST00000324103 3627 ntAPPRIS P1 TSL 1 (best) BASIC27.79■■■□□ 2.04
SHROOM4Q9ULL8 COPS7B-206ENST00000410017 2051 ntTSL 3 BASIC27.79■■■□□ 2.04
SHROOM4Q9ULL8 AP2A2-201ENST00000332231 4656 ntAPPRIS ALT1 TSL 1 (best) BASIC27.79■■■□□ 2.04
SHROOM4Q9ULL8 TCOF1-206ENST00000445265 4825 ntAPPRIS ALT2 TSL 5 BASIC27.79■■■□□ 2.04
SHROOM4Q9ULL8 MED16-207ENST00000589119 2772 ntAPPRIS P2 TSL 1 (best) BASIC27.79■■■□□ 2.04
SHROOM4Q9ULL8 SEPT9-228ENST00000590294 2816 ntAPPRIS ALT2 TSL 5 BASIC27.79■■■□□ 2.04
Retrieved 100 of 98,524 protein–RNA pairs in 46.7 ms