Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 ANAPC5-201ENST00000261819 2513 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
TRIM39Q9HCM9 TMEM141-201ENST00000290079 768 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
TRIM39Q9HCM9 NOL4L-202ENST00000326071 701 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
TRIM39Q9HCM9 CIDEC-201ENST00000336832 1277 ntAPPRIS P3 TSL 1 (best) BASIC14.8□□□□□ -0.04
TRIM39Q9HCM9 NCR3-201ENST00000340027 1042 ntAPPRIS P3 TSL 1 (best) BASIC14.8□□□□□ -0.04
TRIM39Q9HCM9 SPAG11B-203ENST00000359758 612 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
TRIM39Q9HCM9 EDN2-201ENST00000372587 1241 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
TRIM39Q9HCM9 RBAK-RBAKDN-201ENST00000396904 766 ntAPPRIS P2 TSL 4 BASIC14.8□□□□□ -0.04
TRIM39Q9HCM9 RBAK-RBAKDN-202ENST00000407184 1001 ntAPPRIS ALT2 TSL 2 BASIC14.8□□□□□ -0.04
TRIM39Q9HCM9 AL157392.1-201ENST00000412388 373 ntTSL 2 BASIC14.8□□□□□ -0.04
TRIM39Q9HCM9 ZNF815P-202ENST00000422825 805 ntTSL 5 BASIC14.8□□□□□ -0.04
TRIM39Q9HCM9 CIDEC-203ENST00000423850 1036 ntTSL 2 BASIC14.8□□□□□ -0.04
TRIM39Q9HCM9 LINC02158-201ENST00000432377 897 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
TRIM39Q9HCM9 CIDEC-206ENST00000455015 1123 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
TRIM39Q9HCM9 RPL23A-206ENST00000496182 636 ntTSL 3 BASIC14.8□□□□□ -0.04
TRIM39Q9HCM9 LINC00621-201ENST00000577004 1177 ntTSL 4 BASIC14.8□□□□□ -0.04
TRIM39Q9HCM9 AC004637.1-201ENST00000586675 482 ntTSL 3 BASIC14.8□□□□□ -0.04
TRIM39Q9HCM9 AC073413.1-201ENST00000603927 732 ntBASIC14.8□□□□□ -0.04
TRIM39Q9HCM9 ZACNP1-201ENST00000612259 710 ntBASIC14.8□□□□□ -0.04
TRIM39Q9HCM9 AC093326.2-201ENST00000640770 729 ntTSL 5 BASIC14.8□□□□□ -0.04
TRIM39Q9HCM9 RASGRF2-206ENST00000638442 2842 ntTSL 5 BASIC14.8□□□□□ -0.04
TRIM39Q9HCM9 RPRD1A-202ENST00000399022 4438 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
TRIM39Q9HCM9 AC003102.2-201ENST00000589195 1469 ntBASIC14.8□□□□□ -0.04
TRIM39Q9HCM9 MYOZ1-201ENST00000359322 1541 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
TRIM39Q9HCM9 UGGT2-204ENST00000397618 1547 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
TRIM39Q9HCM9 RAB5B-202ENST00000448789 1530 ntTSL 2 BASIC14.8□□□□□ -0.04
TRIM39Q9HCM9 ZDHHC3-201ENST00000296127 3101 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
TRIM39Q9HCM9 FKBP9-201ENST00000242209 3462 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
TRIM39Q9HCM9 SALL4P5-201ENST00000419001 1760 ntBASIC14.8□□□□□ -0.04
TRIM39Q9HCM9 FKBP5-201ENST00000357266 3772 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
TRIM39Q9HCM9 CSGALNACT1-211ENST00000522854 1990 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
TRIM39Q9HCM9 PER2-201ENST00000254657 6385 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
TRIM39Q9HCM9 TM4SF4-201ENST00000305354 2101 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
TRIM39Q9HCM9 IL17RA-204ENST00000612619 8506 ntAPPRIS ALT2 TSL 5 BASIC14.8□□□□□ -0.04
TRIM39Q9HCM9 RTP1-201ENST00000312295 2217 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
TRIM39Q9HCM9 PDPK1-201ENST00000268673 4728 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
TRIM39Q9HCM9 GSN-203ENST00000373808 2664 ntTSL 2 BASIC14.79□□□□□ -0.04
TRIM39Q9HCM9 PCDHB8-201ENST00000239444 2740 ntAPPRIS P1 BASIC14.79□□□□□ -0.04
TRIM39Q9HCM9 VAT1-201ENST00000355653 2734 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
TRIM39Q9HCM9 TMCC2-202ENST00000330675 2780 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
TRIM39Q9HCM9 AC005885.1-204ENST00000637885 2885 ntAPPRIS P1 TSL 5 BASIC14.79□□□□□ -0.04
TRIM39Q9HCM9 NFKB2-203ENST00000369966 3101 ntAPPRIS P4 TSL 1 (best) BASIC14.79□□□□□ -0.04
TRIM39Q9HCM9 SLC2A11-203ENST00000345044 3219 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
TRIM39Q9HCM9 PIP5K1C-202ENST00000537021 3326 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
TRIM39Q9HCM9 MTRF1L-201ENST00000367230 3431 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
TRIM39Q9HCM9 GRIN2C-201ENST00000293190 4261 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.04
TRIM39Q9HCM9 RRP1B-201ENST00000340648 5090 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
TRIM39Q9HCM9 ECSIT-201ENST00000252440 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
TRIM39Q9HCM9 EIF3G-201ENST00000253108 1103 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
TRIM39Q9HCM9 CAPN7-201ENST00000253693 4353 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
TRIM39Q9HCM9 BUD13-201ENST00000260210 2196 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.04
TRIM39Q9HCM9 MRPS17-201ENST00000285298 1845 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
TRIM39Q9HCM9 CHRNA7-201ENST00000306901 6181 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.04
TRIM39Q9HCM9 F2-201ENST00000311907 2023 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
TRIM39Q9HCM9 FARS2-202ENST00000324331 1692 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
TRIM39Q9HCM9 ZC3H14-204ENST00000336693 2007 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
TRIM39Q9HCM9 RN7SKP230-201ENST00000365642 335 ntBASIC14.79□□□□□ -0.04
TRIM39Q9HCM9 MAEL-202ENST00000367872 1908 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
TRIM39Q9HCM9 DUSP23-202ENST00000368108 694 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
TRIM39Q9HCM9 RALGDS-202ENST00000372050 3634 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.04
TRIM39Q9HCM9 TCEAL1-203ENST00000372626 721 ntAPPRIS P1 TSL 2 BASIC14.79□□□□□ -0.04
TRIM39Q9HCM9 SUMO1-203ENST00000392246 1536 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
TRIM39Q9HCM9 GRAMD4-202ENST00000406902 4484 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
TRIM39Q9HCM9 DHCR7-202ENST00000407721 2601 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
TRIM39Q9HCM9 MCFD2-204ENST00000409207 1113 ntAPPRIS P1 TSL 2 BASIC14.79□□□□□ -0.04
TRIM39Q9HCM9 AC004945.1-201ENST00000416738 983 ntBASIC14.79□□□□□ -0.04
TRIM39Q9HCM9 TUBB1P2-201ENST00000422712 1306 ntBASIC14.79□□□□□ -0.04
TRIM39Q9HCM9 RGS5-214ENST00000429865 754 ntTSL 3 BASIC14.79□□□□□ -0.04
TRIM39Q9HCM9 GPAT2-202ENST00000434632 3061 ntAPPRIS P1 TSL 5 BASIC14.79□□□□□ -0.04
TRIM39Q9HCM9 SLC6A13-203ENST00000445055 1950 ntTSL 2 BASIC14.79□□□□□ -0.04
TRIM39Q9HCM9 TLX1NB-202ENST00000445873 1862 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
TRIM39Q9HCM9 AL109910.1-201ENST00000452071 1330 ntTSL 2 BASIC14.79□□□□□ -0.04
TRIM39Q9HCM9 GLYCTK-203ENST00000461183 889 ntTSL 3 BASIC14.79□□□□□ -0.04
TRIM39Q9HCM9 ROPN1-207ENST00000484329 566 ntTSL 3 BASIC14.79□□□□□ -0.04
TRIM39Q9HCM9 TUBB1P1-201ENST00000503144 1300 ntBASIC14.79□□□□□ -0.04
TRIM39Q9HCM9 LYRM9-204ENST00000503642 432 ntTSL 3 BASIC14.79□□□□□ -0.04
TRIM39Q9HCM9 AC008808.1-201ENST00000508923 432 ntTSL 3 BASIC14.79□□□□□ -0.04
TRIM39Q9HCM9 AC106772.2-201ENST00000515085 442 ntTSL 3 BASIC14.79□□□□□ -0.04
TRIM39Q9HCM9 ATF7-205ENST00000548446 1892 ntAPPRIS ALT1 TSL 2 BASIC14.79□□□□□ -0.04
TRIM39Q9HCM9 RASSF5-201ENST00000577571 3496 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
TRIM39Q9HCM9 TECR-207ENST00000596073 1170 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
TRIM39Q9HCM9 TECR-220ENST00000600083 1204 ntTSL 2 BASIC14.79□□□□□ -0.04
TRIM39Q9HCM9 CICP24-201ENST00000605464 2705 ntBASIC14.79□□□□□ -0.04
TRIM39Q9HCM9 COPS9-205ENST00000607357 418 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
TRIM39Q9HCM9 SPPL2B-207ENST00000610743 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
TRIM39Q9HCM9 INE2-201ENST00000630399 1874 ntBASIC14.79□□□□□ -0.04
TRIM39Q9HCM9 TSPAN11-201ENST00000261177 5505 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
TRIM39Q9HCM9 RPGRIP1-210ENST00000556336 2955 ntTSL 5 BASIC14.79□□□□□ -0.04
TRIM39Q9HCM9 ALOX15-202ENST00000570836 2784 ntAPPRIS P1 TSL 2 BASIC14.79□□□□□ -0.04
TRIM39Q9HCM9 KCNK4-TEX40-201ENST00000539086 2733 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
TRIM39Q9HCM9 PCK2-203ENST00000545054 2505 ntTSL 2 BASIC14.79□□□□□ -0.04
TRIM39Q9HCM9 AC009961.1-203ENST00000607836 2520 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
TRIM39Q9HCM9 CYB561D1-201ENST00000310611 5009 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
TRIM39Q9HCM9 C19orf57-201ENST00000346736 2489 ntAPPRIS P2 TSL 2 BASIC14.78□□□□□ -0.04
TRIM39Q9HCM9 AJ011931.1-201ENST00000618749 2492 ntBASIC14.78□□□□□ -0.04
TRIM39Q9HCM9 REC8-209ENST00000611366 2331 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
TRIM39Q9HCM9 VTN-201ENST00000226218 2149 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
TRIM39Q9HCM9 SLC35C1-201ENST00000314134 4171 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
TRIM39Q9HCM9 TRIM67-201ENST00000366653 3936 ntAPPRIS P2 TSL 1 (best) BASIC14.78□□□□□ -0.04
TRIM39Q9HCM9 SULT1C4-201ENST00000272452 1860 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 37.8 ms