Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 AC016397.2-201ENST00000624848 1985 ntBASIC15.37■□□□□ 0.05
PCDH9Q9HC56 ARMC5-202ENST00000408912 3626 ntAPPRIS ALT2 TSL 2 BASIC15.37■□□□□ 0.05
PCDH9Q9HC56 KRTAP19-3-201ENST00000334063 522 ntAPPRIS P1 BASIC15.37■□□□□ 0.05
PCDH9Q9HC56 SCGN-201ENST00000334979 704 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
PCDH9Q9HC56 NDUFB8-202ENST00000370320 684 ntTSL 3 BASIC15.37■□□□□ 0.05
PCDH9Q9HC56 IFI27L1-201ENST00000393115 674 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
PCDH9Q9HC56 CPLX2-202ENST00000393745 826 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
PCDH9Q9HC56 TLE1P1-201ENST00000422965 589 ntBASIC15.37■□□□□ 0.05
PCDH9Q9HC56 ABHD11-AS1-201ENST00000427153 662 ntTSL 5 BASIC15.37■□□□□ 0.05
PCDH9Q9HC56 PRSS42-202ENST00000447340 1280 ntTSL 2 BASIC15.37■□□□□ 0.05
PCDH9Q9HC56 AC012640.1-201ENST00000509915 688 ntTSL 3 BASIC15.37■□□□□ 0.05
PCDH9Q9HC56 GNLY-210ENST00000524600 750 ntAPPRIS ALT2 TSL 2 BASIC15.37■□□□□ 0.05
PCDH9Q9HC56 ACRV1-202ENST00000527795 782 ntAPPRIS ALT2 TSL 2 BASIC15.37■□□□□ 0.05
PCDH9Q9HC56 AC011489.1-202ENST00000586556 618 ntTSL 2 BASIC15.37■□□□□ 0.05
PCDH9Q9HC56 AC012645.4-201ENST00000610691 1061 ntBASIC15.37■□□□□ 0.05
PCDH9Q9HC56 AC090505.1-201ENST00000430515 1834 ntBASIC15.37■□□□□ 0.05
PCDH9Q9HC56 FAM163A-201ENST00000341785 2909 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
PCDH9Q9HC56 C12orf49-201ENST00000261318 8404 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
PCDH9Q9HC56 PTPRU-205ENST00000460170 5337 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
PCDH9Q9HC56 CAMK2A-203ENST00000398376 1493 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
PCDH9Q9HC56 AC008894.2-201ENST00000597983 2987 ntTSL 2 BASIC15.37■□□□□ 0.05
PCDH9Q9HC56 DCUN1D3-201ENST00000324344 6162 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
PCDH9Q9HC56 PIP4K2A-201ENST00000323883 1319 ntTSL 2 BASIC15.37■□□□□ 0.05
PCDH9Q9HC56 AC025171.1-202ENST00000499871 2271 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
PCDH9Q9HC56 ZBED8-202ENST00000523213 2484 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
PCDH9Q9HC56 SLC38A4-201ENST00000266579 2728 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
PCDH9Q9HC56 FAM8A1-201ENST00000259963 4677 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
PCDH9Q9HC56 RUNX1-202ENST00000344691 7274 ntAPPRIS ALT1 TSL 1 (best) BASIC15.36■□□□□ 0.05
PCDH9Q9HC56 PLA2G16-201ENST00000323646 2594 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
PCDH9Q9HC56 COL6A2-202ENST00000310645 3446 ntTSL 5 BASIC15.36■□□□□ 0.05
PCDH9Q9HC56 SDR42E2-201ENST00000602312 2630 ntAPPRIS P1 TSL 5 BASIC15.36■□□□□ 0.05
PCDH9Q9HC56 TMPRSS3-204ENST00000433957 2403 ntAPPRIS ALT1 TSL 1 (best) BASIC15.36■□□□□ 0.05
PCDH9Q9HC56 NTRK2-202ENST00000304053 8226 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
PCDH9Q9HC56 RFTN1-203ENST00000432519 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC15.36■□□□□ 0.05
PCDH9Q9HC56 SGK2-201ENST00000341458 2498 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
PCDH9Q9HC56 NRG2-209ENST00000541337 3723 ntTSL 5 BASIC15.36■□□□□ 0.05
PCDH9Q9HC56 STX1A-201ENST00000222812 2095 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
PCDH9Q9HC56 STX1A-204ENST00000395156 2050 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
PCDH9Q9HC56 ADK-205ENST00000539909 1866 ntTSL 2 BASIC15.36■□□□□ 0.05
PCDH9Q9HC56 PLXDC1-201ENST00000315392 6252 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
PCDH9Q9HC56 KIF17-201ENST00000247986 3969 ntAPPRIS P3 TSL 1 (best) BASIC15.36■□□□□ 0.05
PCDH9Q9HC56 CCDC140-201ENST00000295226 1699 ntAPPRIS P2 TSL 1 (best) BASIC15.36■□□□□ 0.05
PCDH9Q9HC56 RTN4IP1-201ENST00000369063 1682 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
PCDH9Q9HC56 AC005523.2-201ENST00000601192 3568 ntTSL 4 BASIC15.36■□□□□ 0.05
PCDH9Q9HC56 PLEKHB2-207ENST00000438882 1460 ntTSL 2 BASIC15.36■□□□□ 0.05
PCDH9Q9HC56 HNRNPH3-201ENST00000265866 2339 ntAPPRIS P4 TSL 1 (best) BASIC15.36■□□□□ 0.05
PCDH9Q9HC56 SRRD-201ENST00000215917 4020 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
PCDH9Q9HC56 LST1-202ENST00000303757 604 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
PCDH9Q9HC56 BAK1-201ENST00000360661 2132 ntTSL 5 BASIC15.36■□□□□ 0.05
PCDH9Q9HC56 ATP5D-202ENST00000395633 704 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
PCDH9Q9HC56 BAATP1-201ENST00000412284 1225 ntBASIC15.36■□□□□ 0.05
PCDH9Q9HC56 AL133456.1-201ENST00000415655 577 ntTSL 4 BASIC15.36■□□□□ 0.05
PCDH9Q9HC56 AC105940.2-201ENST00000421055 380 ntTSL 3 BASIC15.36■□□□□ 0.05
PCDH9Q9HC56 AC099754.1-201ENST00000435884 454 ntTSL 3 BASIC15.36■□□□□ 0.05
PCDH9Q9HC56 GNB3-202ENST00000435982 1110 ntAPPRIS ALT1 TSL 1 (best) BASIC15.36■□□□□ 0.05
PCDH9Q9HC56 CR589904.1-201ENST00000437830 732 ntTSL 5 BASIC15.36■□□□□ 0.05
PCDH9Q9HC56 TTTY23B-201ENST00000442790 549 ntBASIC15.36■□□□□ 0.05
PCDH9Q9HC56 FAM153B-214ENST00000512862 1071 ntAPPRIS ALT2 TSL 2 BASIC15.36■□□□□ 0.05
PCDH9Q9HC56 AC068587.3-201ENST00000526613 355 ntBASIC15.36■□□□□ 0.05
PCDH9Q9HC56 PPP1R14A-203ENST00000587515 607 ntTSL 2 BASIC15.36■□□□□ 0.05
PCDH9Q9HC56 AC068473.4-201ENST00000587527 585 ntTSL 4 BASIC15.36■□□□□ 0.05
PCDH9Q9HC56 AC008805.2-201ENST00000590069 435 ntTSL 5 BASIC15.36■□□□□ 0.05
PCDH9Q9HC56 AC239798.4-201ENST00000609879 700 ntTSL 2 BASIC15.36■□□□□ 0.05
PCDH9Q9HC56 IGHV3-72-202ENST00000621503 303 ntBASIC15.36■□□□□ 0.05
PCDH9Q9HC56 LINC00639-201ENST00000553932 4496 ntTSL 2 BASIC15.36■□□□□ 0.05
PCDH9Q9HC56 HIC2-202ENST00000407598 4734 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
PCDH9Q9HC56 MSTO2P-201ENST00000314835 1709 ntBASIC15.36■□□□□ 0.05
PCDH9Q9HC56 ST7L-207ENST00000369669 1743 ntTSL 2 BASIC15.36■□□□□ 0.05
PCDH9Q9HC56 POLL-204ENST00000370168 1536 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
PCDH9Q9HC56 NFATC4-206ENST00000539237 5686 ntAPPRIS ALT2 TSL 1 (best) BASIC15.36■□□□□ 0.05
PCDH9Q9HC56 AC104581.4-201ENST00000623126 3052 ntBASIC15.36■□□□□ 0.05
PCDH9Q9HC56 AC134312.5-201ENST00000568031 1313 ntBASIC15.36■□□□□ 0.05
PCDH9Q9HC56 JARID2-201ENST00000341776 5755 ntAPPRIS P3 TSL 1 (best) BASIC15.36■□□□□ 0.05
PCDH9Q9HC56 MLF1-201ENST00000355893 2203 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
PCDH9Q9HC56 DSE-202ENST00000359564 4037 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
PCDH9Q9HC56 TUBA8-202ENST00000330423 2018 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
PCDH9Q9HC56 SPOCK3-202ENST00000357545 2936 ntAPPRIS P3 TSL 1 (best) BASIC15.36■□□□□ 0.05
PCDH9Q9HC56 KRTAP10-7-201ENST00000609664 1578 ntAPPRIS P1 BASIC15.36■□□□□ 0.05
PCDH9Q9HC56 LY9-204ENST00000368039 1364 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
PCDH9Q9HC56 ENOSF1-209ENST00000580982 1397 ntTSL 5 BASIC15.36■□□□□ 0.05
PCDH9Q9HC56 REPS1-221ENST00000626459 3665 ntTSL 5 BASIC15.36■□□□□ 0.05
PCDH9Q9HC56 AC055854.1-203ENST00000521141 1630 ntTSL 5 BASIC15.35■□□□□ 0.05
PCDH9Q9HC56 POLL-206ENST00000370172 2308 ntTSL 2 BASIC15.35■□□□□ 0.05
PCDH9Q9HC56 SPIDR-201ENST00000297423 3988 ntAPPRIS P3 TSL 1 (best) BASIC15.35■□□□□ 0.05
PCDH9Q9HC56 STAG3L2-201ENST00000426587 2130 ntTSL 2 BASIC15.35■□□□□ 0.05
PCDH9Q9HC56 PHKG1-210ENST00000537360 2139 ntAPPRIS ALT1 TSL 1 (best) BASIC15.35■□□□□ 0.05
PCDH9Q9HC56 TATDN3-202ENST00000366974 2389 ntAPPRIS P3 TSL 1 (best) BASIC15.35■□□□□ 0.05
PCDH9Q9HC56 RAPGEF4-201ENST00000397081 4299 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
PCDH9Q9HC56 WAC-AS1-202ENST00000528337 2608 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
PCDH9Q9HC56 LINC01864-201ENST00000587218 1661 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
PCDH9Q9HC56 NBEA-201ENST00000310336 10794 ntAPPRIS ALT1 TSL 1 (best) BASIC15.35■□□□□ 0.05
PCDH9Q9HC56 KDELR2-201ENST00000258739 2884 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
PCDH9Q9HC56 FRMD5-201ENST00000402883 4091 ntTSL 5 BASIC15.35■□□□□ 0.05
PCDH9Q9HC56 TK2-221ENST00000620035 5060 ntTSL 2 BASIC15.35■□□□□ 0.05
PCDH9Q9HC56 IRGQ-201ENST00000422989 9685 ntAPPRIS P1 TSL 5 BASIC15.35■□□□□ 0.05
PCDH9Q9HC56 ICA1-207ENST00000406470 2440 ntAPPRIS P3 TSL 1 (best) BASIC15.35■□□□□ 0.05
PCDH9Q9HC56 AC003102.2-201ENST00000589195 1469 ntBASIC15.35■□□□□ 0.05
PCDH9Q9HC56 DOK1-202ENST00000340004 1722 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
PCDH9Q9HC56 HNRNPUL1-205ENST00000593587 2725 ntTSL 2 BASIC15.35■□□□□ 0.05
PCDH9Q9HC56 ZBED1-202ENST00000381222 4507 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 69.7 ms