Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 TNNT3-207ENST00000381589 1060 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
SHANK3Q9BYB0 GAPDH-203ENST00000396858 1292 ntTSL 5 BASIC18.54■□□□□ 0.56
SHANK3Q9BYB0 AP002856.2-201ENST00000416553 584 ntTSL 3 BASIC18.54■□□□□ 0.56
SHANK3Q9BYB0 XG-202ENST00000419513 979 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
SHANK3Q9BYB0 AC006372.2-201ENST00000433660 292 ntTSL 3 BASIC18.54■□□□□ 0.56
SHANK3Q9BYB0 TEX36-AS1-202ENST00000446081 749 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
SHANK3Q9BYB0 AP003031.2-205ENST00000531263 683 ntTSL 2 BASIC18.54■□□□□ 0.56
SHANK3Q9BYB0 TNFSF13B-206ENST00000542136 495 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
SHANK3Q9BYB0 AC145285.5-201ENST00000562217 361 ntBASIC18.54■□□□□ 0.56
SHANK3Q9BYB0 PLA2G15-209ENST00000566188 1203 ntTSL 2 BASIC18.54■□□□□ 0.56
SHANK3Q9BYB0 AC017033.1-201ENST00000603720 708 ntTSL 2 BASIC18.54■□□□□ 0.56
SHANK3Q9BYB0 AL353622.2-201ENST00000605846 425 ntBASIC18.54■□□□□ 0.56
SHANK3Q9BYB0 CHAF1A-201ENST00000301280 3339 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
SHANK3Q9BYB0 RPL3L-201ENST00000268661 2182 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
SHANK3Q9BYB0 RHOH-220ENST00000615083 2156 ntAPPRIS P1 TSL 4 BASIC18.54■□□□□ 0.56
SHANK3Q9BYB0 KYAT1-201ENST00000302586 1903 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
SHANK3Q9BYB0 TJAP1-207ENST00000436109 2572 ntAPPRIS P1 TSL 5 BASIC18.54■□□□□ 0.56
SHANK3Q9BYB0 LINC01864-201ENST00000587218 1661 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
SHANK3Q9BYB0 DDX1-201ENST00000233084 2739 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
SHANK3Q9BYB0 HYOU1-218ENST00000614668 1569 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
SHANK3Q9BYB0 MPP6-202ENST00000396475 3848 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
SHANK3Q9BYB0 ENPP7P8-202ENST00000527856 1345 ntBASIC18.54■□□□□ 0.56
SHANK3Q9BYB0 CTSD-201ENST00000236671 2123 ntAPPRIS P2 TSL 1 (best) BASIC18.54■□□□□ 0.56
SHANK3Q9BYB0 VAC14-AS1-201ENST00000398177 2145 ntTSL 2 BASIC18.54■□□□□ 0.56
SHANK3Q9BYB0 C16orf54-201ENST00000329410 2585 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
SHANK3Q9BYB0 KCNK4-TEX40-201ENST00000539086 2733 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
SHANK3Q9BYB0 DHCR7-202ENST00000407721 2601 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
SHANK3Q9BYB0 LINC01648-201ENST00000445180 1519 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
SHANK3Q9BYB0 ANKRD40-201ENST00000285243 4184 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
SHANK3Q9BYB0 AC009961.1-203ENST00000607836 2520 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
SHANK3Q9BYB0 AC215219.1-201ENST00000400706 1817 ntBASIC18.54■□□□□ 0.56
SHANK3Q9BYB0 IDH2-201ENST00000330062 2694 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
SHANK3Q9BYB0 CDKN2C-202ENST00000371761 1220 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
SHANK3Q9BYB0 TPRKB-203ENST00000409716 816 ntTSL 5 BASIC18.54■□□□□ 0.56
SHANK3Q9BYB0 SMAD9-IT1-201ENST00000437983 504 ntTSL 3 BASIC18.54■□□□□ 0.56
SHANK3Q9BYB0 MIATNB-206ENST00000444388 918 ntTSL 3 BASIC18.54■□□□□ 0.56
SHANK3Q9BYB0 PFN2-212ENST00000490975 858 ntTSL 4 BASIC18.54■□□□□ 0.56
SHANK3Q9BYB0 SLC25A15P3-201ENST00000505530 290 ntBASIC18.54■□□□□ 0.56
SHANK3Q9BYB0 AC026191.1-204ENST00000517846 608 ntTSL 3 BASIC18.54■□□□□ 0.56
SHANK3Q9BYB0 ALG10B-203ENST00000551464 571 ntTSL 3 BASIC18.54■□□□□ 0.56
SHANK3Q9BYB0 DLK1-205ENST00000556051 469 ntTSL 2 BASIC18.54■□□□□ 0.56
SHANK3Q9BYB0 AC010503.4-201ENST00000615487 688 ntBASIC18.54■□□□□ 0.56
SHANK3Q9BYB0 Metazoa_SRP.157-201ENST00000622819 262 ntBASIC18.54■□□□□ 0.56
SHANK3Q9BYB0 MKRN2-202ENST00000411987 1436 ntTSL 2 BASIC18.54■□□□□ 0.56
SHANK3Q9BYB0 MINDY1-201ENST00000312210 2400 ntTSL 2 BASIC18.54■□□□□ 0.56
SHANK3Q9BYB0 RRAGA-201ENST00000380527 1589 ntAPPRIS P1 BASIC18.54■□□□□ 0.56
SHANK3Q9BYB0 AC068946.1-202ENST00000318673 2745 ntAPPRIS P1 TSL 2 BASIC18.54■□□□□ 0.56
SHANK3Q9BYB0 FBLN1-202ENST00000327858 2896 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
SHANK3Q9BYB0 ZDHHC6-201ENST00000369404 1721 ntAPPRIS ALT1 TSL 1 (best) BASIC18.54■□□□□ 0.56
SHANK3Q9BYB0 BEAN1-201ENST00000299694 2160 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
SHANK3Q9BYB0 TCP10-210ENST00000617120 2182 ntAPPRIS ALT2 TSL 5 BASIC18.54■□□□□ 0.56
SHANK3Q9BYB0 FAM57B-202ENST00000380495 2313 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
SHANK3Q9BYB0 GOLGA8UP-201ENST00000527159 1755 ntBASIC18.53■□□□□ 0.56
SHANK3Q9BYB0 AC232323.1-201ENST00000540724 2099 ntBASIC18.53■□□□□ 0.56
SHANK3Q9BYB0 IRX6-201ENST00000290552 3128 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
SHANK3Q9BYB0 AC008894.3-201ENST00000624324 3103 ntBASIC18.53■□□□□ 0.56
SHANK3Q9BYB0 SEPT2-245ENST00000616972 3446 ntTSL 2 BASIC18.53■□□□□ 0.56
SHANK3Q9BYB0 CBX2-202ENST00000310942 4644 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
SHANK3Q9BYB0 DCAF11-217ENST00000559115 2711 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
SHANK3Q9BYB0 USH1C-207ENST00000527720 2278 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
SHANK3Q9BYB0 PDE4C-204ENST00000539010 1699 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
SHANK3Q9BYB0 UPF3B-202ENST00000345865 2335 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
SHANK3Q9BYB0 TMEM9-203ENST00000367333 1564 ntAPPRIS P3 TSL 1 (best) BASIC18.53■□□□□ 0.56
SHANK3Q9BYB0 TRIP10-210ENST00000600428 2249 ntTSL 5 BASIC18.53■□□□□ 0.56
SHANK3Q9BYB0 IFNLR1-204ENST00000374419 953 ntTSL 5 BASIC18.53■□□□□ 0.56
SHANK3Q9BYB0 C11orf49-203ENST00000378618 1166 ntTSL 5 BASIC18.53■□□□□ 0.56
SHANK3Q9BYB0 TIMM17B-204ENST00000465150 964 ntTSL 2 BASIC18.53■□□□□ 0.56
SHANK3Q9BYB0 FRMD4A-204ENST00000475141 1233 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
SHANK3Q9BYB0 NMNAT3-213ENST00000512391 794 ntTSL 3 BASIC18.53■□□□□ 0.56
SHANK3Q9BYB0 IMMP1L-202ENST00000526776 469 ntTSL 3 BASIC18.53■□□□□ 0.56
SHANK3Q9BYB0 AC005845.1-201ENST00000539206 653 ntTSL 3 BASIC18.53■□□□□ 0.56
SHANK3Q9BYB0 EIF2B1-205ENST00000539951 848 ntTSL 5 BASIC18.53■□□□□ 0.56
SHANK3Q9BYB0 SCGB1B2P-201ENST00000595013 612 ntTSL 2 BASIC18.53■□□□□ 0.56
SHANK3Q9BYB0 AL136982.5-201ENST00000605222 294 ntBASIC18.53■□□□□ 0.56
SHANK3Q9BYB0 SLC35A3-209ENST00000638338 2890 ntTSL 5 BASIC18.53■□□□□ 0.56
SHANK3Q9BYB0 ADD3-202ENST00000356080 3081 ntAPPRIS P4 TSL 1 (best) BASIC18.53■□□□□ 0.56
SHANK3Q9BYB0 ADCY1-204ENST00000621543 1647 ntTSL 5 BASIC18.53■□□□□ 0.56
SHANK3Q9BYB0 LINC02395-201ENST00000546821 3157 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
SHANK3Q9BYB0 FAM86C1-201ENST00000346333 2010 ntAPPRIS P3 TSL 1 (best) BASIC18.53■□□□□ 0.56
SHANK3Q9BYB0 SLC26A11-202ENST00000411502 2872 ntAPPRIS P1 TSL 2 BASIC18.53■□□□□ 0.56
SHANK3Q9BYB0 DAGLB-204ENST00000436575 2385 ntTSL 2 BASIC18.53■□□□□ 0.56
SHANK3Q9BYB0 TMEM25-206ENST00000442938 2228 ntTSL 2 BASIC18.53■□□□□ 0.56
SHANK3Q9BYB0 GNG4-202ENST00000366598 1721 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
SHANK3Q9BYB0 ERRFI1-201ENST00000377482 3104 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
SHANK3Q9BYB0 TPD52L2-204ENST00000351424 2302 ntAPPRIS P4 TSL 2 BASIC18.52■□□□□ 0.56
SHANK3Q9BYB0 OGFOD2-202ENST00000397389 2308 ntTSL 2 BASIC18.52■□□□□ 0.56
SHANK3Q9BYB0 ASAP2-201ENST00000281419 5712 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.56
SHANK3Q9BYB0 SEC61B-201ENST00000223641 545 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
SHANK3Q9BYB0 TMEM95-201ENST00000330767 1169 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.56
SHANK3Q9BYB0 CTSL-202ENST00000342020 933 ntTSL 2 BASIC18.52■□□□□ 0.56
SHANK3Q9BYB0 HNRNPA1P2-207ENST00000432375 960 ntBASIC18.52■□□□□ 0.56
SHANK3Q9BYB0 AC092573.1-201ENST00000433054 884 ntBASIC18.52■□□□□ 0.56
SHANK3Q9BYB0 AL365500.1-201ENST00000442783 868 ntTSL 3 BASIC18.52■□□□□ 0.56
SHANK3Q9BYB0 LINC00892-203ENST00000454385 686 ntTSL 3 BASIC18.52■□□□□ 0.56
SHANK3Q9BYB0 LINC00887-204ENST00000456816 796 ntTSL 3 BASIC18.52■□□□□ 0.56
SHANK3Q9BYB0 SEC61B-203ENST00000498603 587 ntTSL 3 BASIC18.52■□□□□ 0.56
SHANK3Q9BYB0 HINT1-205ENST00000508488 703 ntTSL 2 BASIC18.52■□□□□ 0.56
SHANK3Q9BYB0 NAA38-205ENST00000575771 852 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
SHANK3Q9BYB0 GALNTL6-205ENST00000511251 2905 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
SHANK3Q9BYB0 WASF1-206ENST00000392588 3122 ntAPPRIS P1 TSL 5 BASIC18.52■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 74 ms