Protein–RNA interactions for Protein: Q96PZ7

CSMD1, CUB and sushi domain-containing protein 1, humanhuman

Predictions only

Length 3,565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD1Q96PZ7 SLC47A1-203ENST00000436810 1719 ntTSL 2 BASIC12.34□□□□□ -0.43
CSMD1Q96PZ7 HNRNPUL2-BSCL2-201ENST00000403734 4001 ntAPPRIS P1 TSL 2 BASIC12.34□□□□□ -0.43
CSMD1Q96PZ7 MYLIP-201ENST00000349606 2796 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
CSMD1Q96PZ7 NCF4-201ENST00000248899 1396 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
CSMD1Q96PZ7 TMBIM7P-202ENST00000641474 1516 ntBASIC12.34□□□□□ -0.43
CSMD1Q96PZ7 ETNPPL-206ENST00000510706 1692 ntTSL 2 BASIC12.34□□□□□ -0.43
CSMD1Q96PZ7 AP4M1-205ENST00000422582 1814 ntTSL 2 BASIC12.34□□□□□ -0.43
CSMD1Q96PZ7 SYBU-219ENST00000528647 2995 ntAPPRIS P4 TSL 2 BASIC12.34□□□□□ -0.43
CSMD1Q96PZ7 PLEKHN1-201ENST00000379407 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC12.34□□□□□ -0.43
CSMD1Q96PZ7 TUB-AS1-201ENST00000506601 2021 ntTSL 2 BASIC12.34□□□□□ -0.43
CSMD1Q96PZ7 MAPT-213ENST00000571987 2277 ntAPPRIS P4 TSL 5 BASIC12.34□□□□□ -0.43
CSMD1Q96PZ7 LIMS1-201ENST00000332345 1235 ntAPPRIS P3 TSL 1 (best) BASIC12.34□□□□□ -0.43
CSMD1Q96PZ7 ABCG1-205ENST00000398449 2998 ntAPPRIS ALT1 TSL 1 (best) BASIC12.34□□□□□ -0.43
CSMD1Q96PZ7 FTCDNL1-203ENST00000420922 772 ntAPPRIS P1 TSL 5 BASIC12.34□□□□□ -0.43
CSMD1Q96PZ7 SNX3-204ENST00000426155 1072 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
CSMD1Q96PZ7 AL162377.1-202ENST00000456688 1181 ntTSL 2 BASIC12.34□□□□□ -0.43
CSMD1Q96PZ7 FAHD2CP-203ENST00000467292 965 ntTSL 2 BASIC12.34□□□□□ -0.43
CSMD1Q96PZ7 DMKN-229ENST00000467637 827 ntAPPRIS ALT2 TSL 5 BASIC12.34□□□□□ -0.43
CSMD1Q96PZ7 RN7SL147P-201ENST00000487345 298 ntBASIC12.34□□□□□ -0.43
CSMD1Q96PZ7 ERICH5-202ENST00000545282 596 ntAPPRIS ALT2 TSL 2 BASIC12.34□□□□□ -0.43
CSMD1Q96PZ7 LINC01029-202ENST00000578833 366 ntTSL 3 BASIC12.34□□□□□ -0.43
CSMD1Q96PZ7 AC093503.1-201ENST00000593888 495 ntTSL 3 BASIC12.34□□□□□ -0.43
CSMD1Q96PZ7 CADM1-221ENST00000612235 1042 ntTSL 5 BASIC12.34□□□□□ -0.43
CSMD1Q96PZ7 WASH2P-202ENST00000538033 2800 ntTSL 2 BASIC12.34□□□□□ -0.43
CSMD1Q96PZ7 AL596257.1-201ENST00000641463 2694 ntBASIC12.34□□□□□ -0.43
CSMD1Q96PZ7 CANT1-211ENST00000591773 1669 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
CSMD1Q96PZ7 MCFD2-201ENST00000319466 4182 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
CSMD1Q96PZ7 DTX3-202ENST00000548198 3199 ntAPPRIS P3 TSL 2 BASIC12.34□□□□□ -0.43
CSMD1Q96PZ7 PODN-201ENST00000312553 3010 ntAPPRIS P3 TSL 1 (best) BASIC12.34□□□□□ -0.43
CSMD1Q96PZ7 LINC00668-206ENST00000581725 1902 ntTSL 2 BASIC12.34□□□□□ -0.43
CSMD1Q96PZ7 MUM1-201ENST00000415183 2837 ntAPPRIS ALT2 TSL 1 (best) BASIC12.33□□□□□ -0.43
CSMD1Q96PZ7 RNASE1-202ENST00000397967 1348 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.43
CSMD1Q96PZ7 PDZRN3-201ENST00000263666 4248 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.43
CSMD1Q96PZ7 PHB-201ENST00000300408 1832 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
CSMD1Q96PZ7 RALGPS1-203ENST00000373434 2466 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
CSMD1Q96PZ7 KAT5-202ENST00000352980 2059 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
CSMD1Q96PZ7 TRA2B-205ENST00000453386 2952 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
CSMD1Q96PZ7 THBS4-201ENST00000350881 3222 ntAPPRIS P3 TSL 1 (best) BASIC12.33□□□□□ -0.44
CSMD1Q96PZ7 IMPDH1-203ENST00000354269 2580 ntTSL 2 BASIC12.33□□□□□ -0.44
CSMD1Q96PZ7 SKA2-202ENST00000437036 625 ntTSL 2 BASIC12.33□□□□□ -0.44
CSMD1Q96PZ7 C1orf198-207ENST00000523410 1041 ntAPPRIS ALT2 TSL 2 BASIC12.33□□□□□ -0.44
CSMD1Q96PZ7 AC093510.1-202ENST00000546238 442 ntTSL 3 BASIC12.33□□□□□ -0.44
CSMD1Q96PZ7 AC009093.2-201ENST00000563477 546 ntTSL 4 BASIC12.33□□□□□ -0.44
CSMD1Q96PZ7 RN7SL602P-201ENST00000578326 324 ntBASIC12.33□□□□□ -0.44
CSMD1Q96PZ7 RN7SL718P-201ENST00000581254 303 ntBASIC12.33□□□□□ -0.44
CSMD1Q96PZ7 RNF103-CHMP3-202ENST00000604011 1135 ntAPPRIS P1 TSL 2 BASIC12.33□□□□□ -0.44
CSMD1Q96PZ7 LINC01398-202ENST00000634819 1292 ntTSL 5 BASIC12.33□□□□□ -0.44
CSMD1Q96PZ7 TMEM117-201ENST00000266534 2758 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
CSMD1Q96PZ7 NOP14-201ENST00000314262 2889 ntAPPRIS P3 TSL 1 (best) BASIC12.33□□□□□ -0.44
CSMD1Q96PZ7 FOXRED1-201ENST00000263578 1970 ntAPPRIS P2 TSL 1 (best) BASIC12.33□□□□□ -0.44
CSMD1Q96PZ7 CCNG2-201ENST00000316355 5526 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
CSMD1Q96PZ7 NOP14-203ENST00000416614 3538 ntAPPRIS P3 TSL 1 (best) BASIC12.33□□□□□ -0.44
CSMD1Q96PZ7 PLD3-201ENST00000356508 1906 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
CSMD1Q96PZ7 AP000845.1-201ENST00000581677 2131 ntBASIC12.33□□□□□ -0.44
CSMD1Q96PZ7 C21orf33-202ENST00000348499 1506 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
CSMD1Q96PZ7 CCL19-201ENST00000311925 687 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
CSMD1Q96PZ7 KRT18P36-201ENST00000411618 1276 ntBASIC12.33□□□□□ -0.44
CSMD1Q96PZ7 AL391361.3-201ENST00000420601 379 ntTSL 2 BASIC12.33□□□□□ -0.44
CSMD1Q96PZ7 BX276092.5-201ENST00000439926 886 ntTSL 5 BASIC12.33□□□□□ -0.44
CSMD1Q96PZ7 LINC02417-201ENST00000542449 515 ntTSL 2 BASIC12.33□□□□□ -0.44
CSMD1Q96PZ7 AC007569.1-201ENST00000550306 600 ntTSL 3 BASIC12.33□□□□□ -0.44
CSMD1Q96PZ7 CDIPT-AS1-202ENST00000565014 729 ntTSL 2 BASIC12.33□□□□□ -0.44
CSMD1Q96PZ7 MLXIPL-204ENST00000414749 3224 ntAPPRIS ALT2 TSL 1 (best) BASIC12.33□□□□□ -0.44
CSMD1Q96PZ7 C7orf43-207ENST00000457641 2005 ntTSL 5 BASIC12.33□□□□□ -0.44
CSMD1Q96PZ7 GPR37-201ENST00000303921 3021 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
CSMD1Q96PZ7 EEPD1-205ENST00000534978 2769 ntAPPRIS P1 TSL 2 BASIC12.33□□□□□ -0.44
CSMD1Q96PZ7 TPM4-202ENST00000344824 1417 ntAPPRIS P1 TSL 5 BASIC12.33□□□□□ -0.44
CSMD1Q96PZ7 PMS1-221ENST00000624204 3417 ntTSL 2 BASIC12.33□□□□□ -0.44
CSMD1Q96PZ7 PGLYRP3-201ENST00000290722 1173 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
CSMD1Q96PZ7 ZCCHC13-201ENST00000339534 842 ntAPPRIS P1 BASIC12.33□□□□□ -0.44
CSMD1Q96PZ7 TRBV4-1-201ENST00000390357 373 ntAPPRIS P1 BASIC12.33□□□□□ -0.44
CSMD1Q96PZ7 TRBV4-2-201ENST00000390392 455 ntAPPRIS P1 BASIC12.33□□□□□ -0.44
CSMD1Q96PZ7 AL157935.1-209ENST00000415141 1105 ntTSL 2 BASIC12.33□□□□□ -0.44
CSMD1Q96PZ7 AL356000.1-201ENST00000441073 1238 ntBASIC12.33□□□□□ -0.44
CSMD1Q96PZ7 ANKRD2-204ENST00000455090 1072 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
CSMD1Q96PZ7 AL132709.1-203ENST00000555103 569 ntTSL 4 BASIC12.33□□□□□ -0.44
CSMD1Q96PZ7 APOC1-209ENST00000592885 562 ntTSL 3 BASIC12.33□□□□□ -0.44
CSMD1Q96PZ7 HGSNAT-207ENST00000521576 2332 ntTSL 2 BASIC12.33□□□□□ -0.44
CSMD1Q96PZ7 CHRNA1-205ENST00000409542 1460 ntTSL 3 BASIC12.33□□□□□ -0.44
CSMD1Q96PZ7 CA12-202ENST00000344366 2744 ntAPPRIS ALT2 TSL 1 (best) BASIC12.33□□□□□ -0.44
CSMD1Q96PZ7 OTUD6A-201ENST00000338352 1689 ntAPPRIS P1 BASIC12.33□□□□□ -0.44
CSMD1Q96PZ7 SPATC1-202ENST00000447830 1795 ntAPPRIS ALT2 TSL 1 (best) BASIC12.32□□□□□ -0.44
CSMD1Q96PZ7 CPSF1-213ENST00000620219 4462 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
CSMD1Q96PZ7 ALDOA-201ENST00000338110 2384 ntAPPRIS P2 TSL 1 (best) BASIC12.32□□□□□ -0.44
CSMD1Q96PZ7 SPECC1-202ENST00000395522 2982 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
CSMD1Q96PZ7 EPB41L4A-AS1-201ENST00000413221 2969 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
CSMD1Q96PZ7 DNAJB9-201ENST00000249356 2715 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
CSMD1Q96PZ7 CCDC187-203ENST00000569961 3158 ntAPPRIS P2 TSL 1 (best) BASIC12.32□□□□□ -0.44
CSMD1Q96PZ7 GCKR-201ENST00000264717 2186 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
CSMD1Q96PZ7 CELF4-202ENST00000361795 1853 ntAPPRIS ALT1 TSL 2 BASIC12.32□□□□□ -0.44
CSMD1Q96PZ7 ALAS2-202ENST00000335854 1795 ntTSL 2 BASIC12.32□□□□□ -0.44
CSMD1Q96PZ7 PLEKHB2-207ENST00000438882 1460 ntTSL 2 BASIC12.32□□□□□ -0.44
CSMD1Q96PZ7 NNAT-202ENST00000346199 1209 ntAPPRIS ALT1 TSL 1 (best) BASIC12.32□□□□□ -0.44
CSMD1Q96PZ7 HIST1H2BF-201ENST00000356530 1196 ntAPPRIS P1 BASIC12.32□□□□□ -0.44
CSMD1Q96PZ7 AC027612.2-202ENST00000445955 1199 ntBASIC12.32□□□□□ -0.44
CSMD1Q96PZ7 OR2T27-202ENST00000460972 1136 ntAPPRIS P1 BASIC12.32□□□□□ -0.44
CSMD1Q96PZ7 TRMT112P3-201ENST00000580149 358 ntBASIC12.32□□□□□ -0.44
CSMD1Q96PZ7 MIR4254-201ENST00000581063 76 ntBASIC12.32□□□□□ -0.44
CSMD1Q96PZ7 CACNA1H-201ENST00000348261 8208 ntAPPRIS P4 TSL 1 (best) BASIC12.32□□□□□ -0.44
CSMD1Q96PZ7 SV2A-201ENST00000369145 2903 ntTSL 2 BASIC12.32□□□□□ -0.44
Retrieved 100 of 98,524 protein–RNA pairs in 30.5 ms