Protein–RNA interactions for Protein: Q8IXF0

NPAS3, Neuronal PAS domain-containing protein 3, humanhuman

Predictions only

Length 933 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS3Q8IXF0 FOXJ2-201ENST00000162391 5523 ntAPPRIS P2 TSL 1 (best) BASIC15.29■□□□□ 0.04
NPAS3Q8IXF0 RHD-203ENST00000357542 1387 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
NPAS3Q8IXF0 MIR137HG-202ENST00000424528 2639 ntTSL 2 BASIC15.29■□□□□ 0.04
NPAS3Q8IXF0 SPRY1-207ENST00000610581 2608 ntAPPRIS P1 TSL 3 BASIC15.29■□□□□ 0.04
NPAS3Q8IXF0 MRPL19-201ENST00000358788 693 ntTSL 5 BASIC15.29■□□□□ 0.04
NPAS3Q8IXF0 CMTM5-203ENST00000359320 1200 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
NPAS3Q8IXF0 SDHAF4-201ENST00000370474 1196 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
NPAS3Q8IXF0 KRTAP2-4-201ENST00000394015 764 ntAPPRIS P1 BASIC15.29■□□□□ 0.04
NPAS3Q8IXF0 LINC01237-201ENST00000415434 573 ntTSL 4 BASIC15.29■□□□□ 0.04
NPAS3Q8IXF0 CHID1-202ENST00000429789 1289 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
NPAS3Q8IXF0 RN7SL8P-201ENST00000461771 266 ntBASIC15.29■□□□□ 0.04
NPAS3Q8IXF0 DUSP13-206ENST00000472493 920 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
NPAS3Q8IXF0 ZNF124-204ENST00000491356 956 ntTSL 2 BASIC15.29■□□□□ 0.04
NPAS3Q8IXF0 RBM4B-202ENST00000524637 867 ntTSL 5 BASIC15.29■□□□□ 0.04
NPAS3Q8IXF0 CFL1-206ENST00000527344 962 ntTSL 2 BASIC15.29■□□□□ 0.04
NPAS3Q8IXF0 AC135983.4-201ENST00000564116 1262 ntBASIC15.29■□□□□ 0.04
NPAS3Q8IXF0 TMEM231-206ENST00000565067 1078 ntTSL 5 BASIC15.29■□□□□ 0.04
NPAS3Q8IXF0 PHBP15-201ENST00000574228 665 ntBASIC15.29■□□□□ 0.04
NPAS3Q8IXF0 AIPL1-211ENST00000576776 1190 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
NPAS3Q8IXF0 NAT9-220ENST00000582870 896 ntTSL 5 BASIC15.29■□□□□ 0.04
NPAS3Q8IXF0 HPN-206ENST00000597419 1212 ntTSL 5 BASIC15.29■□□□□ 0.04
NPAS3Q8IXF0 ITGA9-AS1-213ENST00000614028 913 ntTSL 5 BASIC15.29■□□□□ 0.04
NPAS3Q8IXF0 AC242376.2-201ENST00000619355 883 ntBASIC15.29■□□□□ 0.04
NPAS3Q8IXF0 EXOC3L1-201ENST00000314586 2510 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
NPAS3Q8IXF0 ORAOV1-201ENST00000279147 2478 ntAPPRIS P2 TSL 1 (best) BASIC15.29■□□□□ 0.04
NPAS3Q8IXF0 IFRD1-202ENST00000403825 2290 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
NPAS3Q8IXF0 AC007182.1-201ENST00000455232 2159 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
NPAS3Q8IXF0 LINC02495-201ENST00000508601 4167 ntTSL 2 BASIC15.29■□□□□ 0.04
NPAS3Q8IXF0 EPS8L2-201ENST00000318562 3148 ntAPPRIS P2 TSL 1 (best) BASIC15.29■□□□□ 0.04
NPAS3Q8IXF0 NTRK2-205ENST00000376208 8178 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
NPAS3Q8IXF0 TRAK1-208ENST00000484786 2008 ntTSL 5 BASIC15.29■□□□□ 0.04
NPAS3Q8IXF0 MFSD5-202ENST00000534842 2038 ntTSL 2 BASIC15.29■□□□□ 0.04
NPAS3Q8IXF0 TBC1D17-202ENST00000535102 2025 ntTSL 2 BASIC15.29■□□□□ 0.04
NPAS3Q8IXF0 SLC6A8-201ENST00000253122 3763 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
NPAS3Q8IXF0 AC015909.3-201ENST00000572855 1794 ntBASIC15.29■□□□□ 0.04
NPAS3Q8IXF0 TRIM13-204ENST00000420995 2607 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
NPAS3Q8IXF0 GATA4-206ENST00000528712 2614 ntTSL 2 BASIC15.29■□□□□ 0.04
NPAS3Q8IXF0 KIAA2026-202ENST00000399933 6988 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
NPAS3Q8IXF0 ICA1L-201ENST00000358299 3457 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
NPAS3Q8IXF0 AFTPH-201ENST00000238855 4113 ntAPPRIS ALT1 TSL 5 BASIC15.28■□□□□ 0.04
NPAS3Q8IXF0 SETD1B-201ENST00000267197 5772 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
NPAS3Q8IXF0 UBXN11-202ENST00000357089 1555 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
NPAS3Q8IXF0 AC126365.1-201ENST00000578585 1514 ntBASIC15.28■□□□□ 0.04
NPAS3Q8IXF0 FBXO5-202ENST00000367241 2221 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
NPAS3Q8IXF0 AC104758.3-201ENST00000563349 1453 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
NPAS3Q8IXF0 RASA4B-202ENST00000465829 2931 ntAPPRIS ALT1 TSL 1 (best) BASIC15.28■□□□□ 0.04
NPAS3Q8IXF0 KCNJ18-201ENST00000567955 2196 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
NPAS3Q8IXF0 MIR762HG-203ENST00000570025 1429 ntTSL 2 BASIC15.28■□□□□ 0.04
NPAS3Q8IXF0 GFRA2-208ENST00000524240 4921 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
NPAS3Q8IXF0 CRAT-201ENST00000318080 2763 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
NPAS3Q8IXF0 CNOT3-204ENST00000447684 2765 ntTSL 2 BASIC15.28■□□□□ 0.04
NPAS3Q8IXF0 NORAD-201ENST00000565493 5339 ntBASIC15.28■□□□□ 0.04
NPAS3Q8IXF0 SLC18A1-207ENST00000519026 1980 ntTSL 5 BASIC15.28■□□□□ 0.04
NPAS3Q8IXF0 ARID4B-202ENST00000349213 5811 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
NPAS3Q8IXF0 ARHGAP9-203ENST00000424809 2569 ntTSL 2 BASIC15.28■□□□□ 0.04
NPAS3Q8IXF0 RUBCNL-212ENST00000631139 1948 ntAPPRIS ALT2 TSL 2 BASIC15.28■□□□□ 0.04
NPAS3Q8IXF0 IL9-201ENST00000274520 591 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
NPAS3Q8IXF0 UBL4A-201ENST00000369653 711 ntTSL 3 BASIC15.28■□□□□ 0.04
NPAS3Q8IXF0 LST1-204ENST00000376086 554 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
NPAS3Q8IXF0 PRTFDC1-202ENST00000376376 741 ntTSL 2 BASIC15.28■□□□□ 0.04
NPAS3Q8IXF0 TRO-205ENST00000399736 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
NPAS3Q8IXF0 PIK3IP1-202ENST00000402249 999 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
NPAS3Q8IXF0 PTPA-215ENST00000432124 567 ntTSL 4 BASIC15.28■□□□□ 0.04
NPAS3Q8IXF0 HLA-DQB2-232ENST00000437316 1214 ntAPPRIS P1 BASIC15.28■□□□□ 0.04
NPAS3Q8IXF0 AL606489.1-201ENST00000443515 486 ntTSL 3 BASIC15.28■□□□□ 0.04
NPAS3Q8IXF0 LINC02440-201ENST00000545276 680 ntTSL 2 BASIC15.28■□□□□ 0.04
NPAS3Q8IXF0 AC073573.1-201ENST00000550908 481 ntTSL 3 BASIC15.28■□□□□ 0.04
NPAS3Q8IXF0 AC020763.1-201ENST00000567186 551 ntTSL 4 BASIC15.28■□□□□ 0.04
NPAS3Q8IXF0 FAM104A-206ENST00000583024 417 ntTSL 3 BASIC15.28■□□□□ 0.04
NPAS3Q8IXF0 FBXL12-202ENST00000585379 956 ntTSL 2 BASIC15.28■□□□□ 0.04
NPAS3Q8IXF0 LINC01783-202ENST00000614408 828 ntBASIC15.28■□□□□ 0.04
NPAS3Q8IXF0 BX284668.2-205ENST00000619677 828 ntBASIC15.28■□□□□ 0.04
NPAS3Q8IXF0 CYP1B1-AS1-221ENST00000627172 995 ntTSL 5 BASIC15.28■□□□□ 0.04
NPAS3Q8IXF0 AC079325.2-202ENST00000641031 462 ntAPPRIS ALT2 BASIC15.28■□□□□ 0.04
NPAS3Q8IXF0 SLC1A7-204ENST00000611397 2499 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
NPAS3Q8IXF0 PTBP1-202ENST00000350092 3069 ntAPPRIS ALT1 TSL 1 (best) BASIC15.28■□□□□ 0.04
NPAS3Q8IXF0 LONRF1-201ENST00000398246 3594 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
NPAS3Q8IXF0 MYEF2-201ENST00000267836 2958 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
NPAS3Q8IXF0 EGLN1-201ENST00000366641 7097 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
NPAS3Q8IXF0 AC018629.1-201ENST00000623381 1736 ntBASIC15.28■□□□□ 0.04
NPAS3Q8IXF0 CDC42-203ENST00000400259 2274 ntAPPRIS ALT1 TSL 5 BASIC15.28■□□□□ 0.04
NPAS3Q8IXF0 SURF6-201ENST00000372022 4447 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
NPAS3Q8IXF0 GCKR-201ENST00000264717 2186 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
NPAS3Q8IXF0 RBM12-201ENST00000359646 5332 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
NPAS3Q8IXF0 STOML1-204ENST00000541638 6336 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
NPAS3Q8IXF0 IQCA1L-203ENST00000615129 2606 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
NPAS3Q8IXF0 RUSC1-205ENST00000368354 3114 ntTSL 2 BASIC15.28■□□□□ 0.04
NPAS3Q8IXF0 TM9SF1-202ENST00000396854 2055 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
NPAS3Q8IXF0 TNFRSF14-AS1-202ENST00000432521 3608 ntTSL 2 BASIC15.28■□□□□ 0.04
NPAS3Q8IXF0 GGT6-204ENST00000574154 2482 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
NPAS3Q8IXF0 CYP4B1-202ENST00000371919 1494 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
NPAS3Q8IXF0 ACOT7-210ENST00000608083 1403 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.04
NPAS3Q8IXF0 TPD52L2-205ENST00000352482 2339 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
NPAS3Q8IXF0 TPD52L2-210ENST00000615907 2310 ntTSL 4 BASIC15.27■□□□□ 0.04
NPAS3Q8IXF0 NCOA6-206ENST00000612493 4082 ntAPPRIS ALT2 TSL 5 BASIC15.27■□□□□ 0.04
NPAS3Q8IXF0 XPO1-201ENST00000401558 4915 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
NPAS3Q8IXF0 LRIT1-201ENST00000372105 2228 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
NPAS3Q8IXF0 AC103702.1-201ENST00000548801 2630 ntBASIC15.27■□□□□ 0.04
NPAS3Q8IXF0 AC063926.3-201ENST00000624734 5658 ntBASIC15.27■□□□□ 0.04
NPAS3Q8IXF0 RECQL5-202ENST00000340830 1749 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 33.1 ms