Protein–RNA interactions for Protein: Q5VTR2

RNF20, E3 ubiquitin-protein ligase BRE1A, humanhuman

Predictions only

Length 975 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF20Q5VTR2 PAX6-202ENST00000379107 2579 ntAPPRIS P4 TSL 5 BASIC17.77■□□□□ 0.44
RNF20Q5VTR2 AL365205.1-204ENST00000359201 2098 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
RNF20Q5VTR2 AL512384.1-201ENST00000406683 331 ntBASIC17.77■□□□□ 0.44
RNF20Q5VTR2 AC105940.2-201ENST00000421055 380 ntTSL 3 BASIC17.77■□□□□ 0.44
RNF20Q5VTR2 ARL6IP4-207ENST00000426960 910 ntAPPRIS ALT2 TSL 3 BASIC17.77■□□□□ 0.44
RNF20Q5VTR2 AC099552.1-201ENST00000431083 744 ntTSL 5 BASIC17.77■□□□□ 0.44
RNF20Q5VTR2 TTTY23B-201ENST00000442790 549 ntBASIC17.77■□□□□ 0.44
RNF20Q5VTR2 AC115284.1-201ENST00000488257 547 ntTSL 4 BASIC17.77■□□□□ 0.44
RNF20Q5VTR2 SLC25A47P1-201ENST00000531577 414 ntBASIC17.77■□□□□ 0.44
RNF20Q5VTR2 ATP6V0A2-207ENST00000544833 1013 ntTSL 2 BASIC17.77■□□□□ 0.44
RNF20Q5VTR2 TSPAN11-204ENST00000546076 1058 ntAPPRIS P1 TSL 2 BASIC17.77■□□□□ 0.44
RNF20Q5VTR2 AC005597.1-201ENST00000588092 420 ntTSL 3 BASIC17.77■□□□□ 0.44
RNF20Q5VTR2 AC233724.13-201ENST00000598383 410 ntBASIC17.77■□□□□ 0.44
RNF20Q5VTR2 AL022328.1-201ENST00000610050 478 ntBASIC17.77■□□□□ 0.44
RNF20Q5VTR2 C9orf50-202ENST00000619117 796 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
RNF20Q5VTR2 FP565260.6-205ENST00000624120 898 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
RNF20Q5VTR2 AL031280.1-201ENST00000436991 2224 ntTSL 2 BASIC17.77■□□□□ 0.44
RNF20Q5VTR2 NUP50-201ENST00000347635 5233 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
RNF20Q5VTR2 SELENOS-201ENST00000398226 1439 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
RNF20Q5VTR2 MTMR6-201ENST00000381801 5659 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
RNF20Q5VTR2 PRNP-201ENST00000379440 2657 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
RNF20Q5VTR2 PEX26-205ENST00000610387 3924 ntTSL 5 BASIC17.77■□□□□ 0.44
RNF20Q5VTR2 HDAC11-201ENST00000295757 2960 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.44
RNF20Q5VTR2 PIK3CG-201ENST00000359195 5377 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
RNF20Q5VTR2 FDFT1-202ENST00000443614 1393 ntTSL 2 BASIC17.77■□□□□ 0.43
RNF20Q5VTR2 FKBP6-201ENST00000252037 1500 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.43
RNF20Q5VTR2 LPAR5-201ENST00000329858 3171 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
RNF20Q5VTR2 PRKD2-202ENST00000433867 3321 ntAPPRIS P3 TSL 5 BASIC17.77■□□□□ 0.43
RNF20Q5VTR2 SLC4A9-203ENST00000506545 2838 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
RNF20Q5VTR2 PDHX-201ENST00000227868 2389 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
RNF20Q5VTR2 FOXP3-203ENST00000376207 2382 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
RNF20Q5VTR2 CEP295NL-201ENST00000322630 2090 ntTSL 2 BASIC17.76■□□□□ 0.43
RNF20Q5VTR2 THY1-206ENST00000528522 2050 ntAPPRIS P1 TSL 2 BASIC17.76■□□□□ 0.43
RNF20Q5VTR2 GPBAR1-203ENST00000521462 1465 ntAPPRIS P1 TSL 2 BASIC17.76■□□□□ 0.43
RNF20Q5VTR2 BTNL8-206ENST00000508408 1717 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
RNF20Q5VTR2 MAGEA2-204ENST00000611674 1728 ntAPPRIS P1 TSL 2 BASIC17.76■□□□□ 0.43
RNF20Q5VTR2 BAIAP3-202ENST00000397488 4583 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
RNF20Q5VTR2 CDK5RAP2-202ENST00000360190 5985 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
RNF20Q5VTR2 NDUFB7-201ENST00000215565 531 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
RNF20Q5VTR2 FIS1-201ENST00000223136 734 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
RNF20Q5VTR2 FGF6-201ENST00000228837 743 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
RNF20Q5VTR2 S100A16-201ENST00000368703 946 ntAPPRIS P1 TSL 3 BASIC17.76■□□□□ 0.43
RNF20Q5VTR2 LINC01759-201ENST00000412639 985 ntTSL 3 BASIC17.76■□□□□ 0.43
RNF20Q5VTR2 CC2D2B-203ENST00000423344 1241 ntTSL 2 BASIC17.76■□□□□ 0.43
RNF20Q5VTR2 TMEM107-204ENST00000437139 747 ntAPPRIS ALT1 TSL 1 (best) BASIC17.76■□□□□ 0.43
RNF20Q5VTR2 MRNIP-212ENST00000520698 902 ntAPPRIS ALT2 TSL 2 BASIC17.76■□□□□ 0.43
RNF20Q5VTR2 AAMDC-206ENST00000526415 579 ntAPPRIS P1 TSL 2 BASIC17.76■□□□□ 0.43
RNF20Q5VTR2 FUZ-207ENST00000526575 482 ntTSL 4 BASIC17.76■□□□□ 0.43
RNF20Q5VTR2 AC125603.2-201ENST00000546835 876 ntTSL 3 BASIC17.76■□□□□ 0.43
RNF20Q5VTR2 C12orf10-204ENST00000548632 988 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
RNF20Q5VTR2 LINC01595-201ENST00000555406 639 ntTSL 3 BASIC17.76■□□□□ 0.43
RNF20Q5VTR2 GNRHR2-203ENST00000581100 1187 ntBASIC17.76■□□□□ 0.43
RNF20Q5VTR2 ETV2-208ENST00000621247 941 ntTSL 5 BASIC17.76■□□□□ 0.43
RNF20Q5VTR2 LINC01759-203ENST00000635271 888 ntTSL 5 BASIC17.76■□□□□ 0.43
RNF20Q5VTR2 ARID1B-222ENST00000637003 1290 ntTSL 5 BASIC17.76■□□□□ 0.43
RNF20Q5VTR2 GPSM1-202ENST00000354753 3533 ntAPPRIS ALT2 TSL 5 BASIC17.76■□□□□ 0.43
RNF20Q5VTR2 MAGED4B-202ENST00000360134 2510 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
RNF20Q5VTR2 CACNA2D1-201ENST00000356253 3858 ntTSL 5 BASIC17.76■□□□□ 0.43
RNF20Q5VTR2 TMEM51-204ENST00000428417 1942 ntAPPRIS P1 TSL 3 BASIC17.76■□□□□ 0.43
RNF20Q5VTR2 SEPT9-208ENST00000541152 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
RNF20Q5VTR2 MCRS1-211ENST00000550165 1936 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
RNF20Q5VTR2 GJD2-201ENST00000290374 2889 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
RNF20Q5VTR2 KIAA1211L-201ENST00000397899 3907 ntAPPRIS P2 TSL 1 (best) BASIC17.76■□□□□ 0.43
RNF20Q5VTR2 IL9R-202ENST00000369423 2032 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
RNF20Q5VTR2 GGT1-202ENST00000400380 2540 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
RNF20Q5VTR2 PRNP-203ENST00000430350 2539 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
RNF20Q5VTR2 LETMD1-203ENST00000418425 2123 ntTSL 2 BASIC17.75■□□□□ 0.43
RNF20Q5VTR2 BLOC1S6-212ENST00000566753 1996 ntTSL 2 BASIC17.75■□□□□ 0.43
RNF20Q5VTR2 TMCO5B-204ENST00000529696 1568 ntTSL 2 BASIC17.75■□□□□ 0.43
RNF20Q5VTR2 MLF1-201ENST00000355893 2203 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
RNF20Q5VTR2 MSTO1-202ENST00000368341 2245 ntTSL 2 BASIC17.75■□□□□ 0.43
RNF20Q5VTR2 IGSF1-204ENST00000370903 4594 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
RNF20Q5VTR2 AUTS2-217ENST00000611706 4583 ntTSL 5 BASIC17.75■□□□□ 0.43
RNF20Q5VTR2 FBXO41-201ENST00000295133 6928 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
RNF20Q5VTR2 COMP-201ENST00000222271 2461 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
RNF20Q5VTR2 NDOR1-202ENST00000371521 2497 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
RNF20Q5VTR2 GCNT7-201ENST00000243913 2064 ntTSL 2 BASIC17.75■□□□□ 0.43
RNF20Q5VTR2 DNM1-203ENST00000393594 3245 ntAPPRIS ALT1 TSL 2 BASIC17.75■□□□□ 0.43
RNF20Q5VTR2 SUSD5-201ENST00000309558 5008 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
RNF20Q5VTR2 UNQ6494-202ENST00000617436 2163 ntTSL 2 BASIC17.75■□□□□ 0.43
RNF20Q5VTR2 PDE6D-201ENST00000287600 1175 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
RNF20Q5VTR2 CSF2-201ENST00000296871 787 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
RNF20Q5VTR2 LRRN1-201ENST00000319331 3823 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
RNF20Q5VTR2 TPM1-207ENST00000403994 1049 ntAPPRIS ALT1 TSL 1 (best) BASIC17.75■□□□□ 0.43
RNF20Q5VTR2 LIMS3-201ENST00000437679 1220 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
RNF20Q5VTR2 AP000552.1-208ENST00000452952 576 ntTSL 4 BASIC17.75■□□□□ 0.43
RNF20Q5VTR2 USP32P1-208ENST00000506594 1164 ntBASIC17.75■□□□□ 0.43
RNF20Q5VTR2 OVOL1-AS1-202ENST00000532454 494 ntTSL 2 BASIC17.75■□□□□ 0.43
RNF20Q5VTR2 AC008735.3-201ENST00000596646 500 ntBASIC17.75■□□□□ 0.43
RNF20Q5VTR2 LRRC34-208ENST00000522830 1781 ntAPPRIS ALT2 TSL 5 BASIC17.75■□□□□ 0.43
RNF20Q5VTR2 RPA3-201ENST00000223129 2020 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
RNF20Q5VTR2 CTTN-202ENST00000346329 3272 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
RNF20Q5VTR2 TNFRSF11A-206ENST00000617039 3756 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
RNF20Q5VTR2 MAPK7-202ENST00000308406 3149 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
RNF20Q5VTR2 ANKMY1-210ENST00000406958 2396 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
RNF20Q5VTR2 ATP6V1C1-202ENST00000518738 2130 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
RNF20Q5VTR2 HIPK4-201ENST00000291823 2452 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
RNF20Q5VTR2 UNC5A-201ENST00000329542 3812 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
RNF20Q5VTR2 INSC-208ENST00000530161 1702 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
RNF20Q5VTR2 SRD5A3-201ENST00000264228 4190 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 34.6 ms