Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 PUS1-208ENST00000542167 2151 ntTSL 5 BASIC10.29□□□□□ -0.76
PRKDCP78527 CDC37-201ENST00000222005 1608 ntAPPRIS P1 TSL 1 (best) BASIC10.29□□□□□ -0.76
PRKDCP78527 AC106707.1-201ENST00000475981 1640 ntTSL 2 BASIC10.29□□□□□ -0.76
PRKDCP78527 MKRN3-201ENST00000314520 2337 ntAPPRIS P1 BASIC10.29□□□□□ -0.76
PRKDCP78527 RCC1-202ENST00000373832 2424 ntAPPRIS P1 TSL 1 (best) BASIC10.29□□□□□ -0.76
PRKDCP78527 GAS7-213ENST00000580865 2417 ntTSL 1 (best) BASIC10.29□□□□□ -0.76
PRKDCP78527 FOXL2-201ENST00000330315 2917 ntAPPRIS P1 BASIC10.29□□□□□ -0.76
PRKDCP78527 CDH24-204ENST00000487137 3438 ntAPPRIS P1 TSL 5 BASIC10.29□□□□□ -0.76
PRKDCP78527 VPS28-201ENST00000292510 979 ntAPPRIS P1 TSL 1 (best) BASIC10.29□□□□□ -0.76
PRKDCP78527 VPS28-202ENST00000377348 1097 ntTSL 1 (best) BASIC10.29□□□□□ -0.76
PRKDCP78527 ARSEP1-202ENST00000430152 499 ntTSL 3 BASIC10.29□□□□□ -0.76
PRKDCP78527 TCEAL4-206ENST00000468024 1135 ntAPPRIS P3 TSL 1 (best) BASIC10.29□□□□□ -0.76
PRKDCP78527 LRRC75A-AS1-208ENST00000480811 968 ntTSL 2 BASIC10.29□□□□□ -0.76
PRKDCP78527 VPS28-210ENST00000529182 1010 ntTSL 2 BASIC10.29□□□□□ -0.76
PRKDCP78527 RPL18A-205ENST00000600147 1391 ntTSL 5 BASIC10.29□□□□□ -0.76
PRKDCP78527 SLC36A1-211ENST00000616007 1389 ntTSL 2 BASIC10.29□□□□□ -0.76
PRKDCP78527 LAP3P2-201ENST00000454686 1454 ntBASIC10.29□□□□□ -0.76
PRKDCP78527 TACC3-212ENST00000612220 1756 ntTSL 5 BASIC10.29□□□□□ -0.76
PRKDCP78527 GUCY1A2-202ENST00000347596 2532 ntTSL 1 (best) BASIC10.29□□□□□ -0.76
PRKDCP78527 RHOF-201ENST00000267205 3009 ntAPPRIS P1 TSL 1 (best) BASIC10.28□□□□□ -0.76
PRKDCP78527 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC10.28□□□□□ -0.76
PRKDCP78527 DDX19B-213ENST00000568625 1681 ntTSL 2 BASIC10.28□□□□□ -0.76
PRKDCP78527 RCBTB2-205ENST00000544492 2622 ntTSL 2 BASIC10.28□□□□□ -0.76
PRKDCP78527 SPATC1L-201ENST00000291672 2303 ntAPPRIS P1 TSL 2 BASIC10.28□□□□□ -0.76
PRKDCP78527 HTR3E-205ENST00000436361 1371 ntTSL 1 (best) BASIC10.28□□□□□ -0.76
PRKDCP78527 PNKD-202ENST00000258362 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC10.28□□□□□ -0.76
PRKDCP78527 IFNGR1-201ENST00000367739 2139 ntAPPRIS P1 TSL 1 (best) BASIC10.28□□□□□ -0.76
PRKDCP78527 PLA2G12B-201ENST00000373032 1128 ntAPPRIS P1 TSL 1 (best) BASIC10.28□□□□□ -0.76
PRKDCP78527 MRPL23-203ENST00000397294 551 ntTSL 4 BASIC10.28□□□□□ -0.76
PRKDCP78527 AP000439.2-201ENST00000542064 726 ntTSL 2 BASIC10.28□□□□□ -0.76
PRKDCP78527 PDLIM1P1-201ENST00000604187 969 ntBASIC10.28□□□□□ -0.76
PRKDCP78527 PRMT5-203ENST00000397440 1907 ntTSL 1 (best) BASIC10.28□□□□□ -0.76
PRKDCP78527 RARS2-201ENST00000369536 1818 ntAPPRIS P1 TSL 1 (best) BASIC10.28□□□□□ -0.76
PRKDCP78527 PKM-220ENST00000568459 1806 ntAPPRIS ALT1 TSL 1 (best) BASIC10.28□□□□□ -0.76
PRKDCP78527 AC009093.10-201ENST00000641956 1442 ntBASIC10.28□□□□□ -0.76
PRKDCP78527 PARD3B-206ENST00000462231 2968 ntTSL 1 (best) BASIC10.28□□□□□ -0.76
PRKDCP78527 LYPLA1-202ENST00000343231 1308 ntTSL 1 (best) BASIC10.28□□□□□ -0.76
PRKDCP78527 PLAGL1-211ENST00000625622 3216 ntAPPRIS P1 TSL 2 BASIC10.28□□□□□ -0.76
PRKDCP78527 TCF25-201ENST00000263346 2233 ntAPPRIS P1 TSL 1 (best) BASIC10.28□□□□□ -0.76
PRKDCP78527 WHRN-202ENST00000362057 3566 ntAPPRIS P1 TSL 1 (best) BASIC10.28□□□□□ -0.76
PRKDCP78527 TSPAN17-209ENST00000515708 2361 ntAPPRIS P1 TSL 1 (best) BASIC10.28□□□□□ -0.76
PRKDCP78527 GTF2H4-201ENST00000259895 1735 ntAPPRIS P1 TSL 1 (best) BASIC10.28□□□□□ -0.76
PRKDCP78527 WT1-209ENST00000530998 2421 ntTSL 2 BASIC10.28□□□□□ -0.76
PRKDCP78527 PSME2P2-201ENST00000453033 700 ntBASIC10.28□□□□□ -0.76
PRKDCP78527 AC093300.1-201ENST00000510368 1201 ntBASIC10.28□□□□□ -0.76
PRKDCP78527 AP003043.1-201ENST00000527804 547 ntTSL 4 BASIC10.28□□□□□ -0.76
PRKDCP78527 CRADD-205ENST00000548483 1056 ntTSL 2 BASIC10.28□□□□□ -0.76
PRKDCP78527 AC145285.5-201ENST00000562217 361 ntBASIC10.28□□□□□ -0.76
PRKDCP78527 Metazoa_SRP.63-201ENST00000617144 298 ntBASIC10.28□□□□□ -0.76
PRKDCP78527 ALPI-201ENST00000295463 2550 ntAPPRIS P1 TSL 1 (best) BASIC10.28□□□□□ -0.76
PRKDCP78527 MAGEA2B-201ENST00000331220 1946 ntAPPRIS P1 TSL 2 BASIC10.28□□□□□ -0.76
PRKDCP78527 FAHD2B-201ENST00000272610 1305 ntAPPRIS P1 TSL 1 (best) BASIC10.28□□□□□ -0.76
PRKDCP78527 TLE3-212ENST00000558201 2766 ntTSL 5 BASIC10.28□□□□□ -0.76
PRKDCP78527 SNCAIP-206ENST00000414317 1591 ntTSL 1 (best) BASIC10.28□□□□□ -0.76
PRKDCP78527 MGEA5-201ENST00000357797 3263 ntTSL 1 (best) BASIC10.28□□□□□ -0.76
PRKDCP78527 TOMM40-207ENST00000592434 3415 ntAPPRIS ALT2 TSL 2 BASIC10.28□□□□□ -0.76
PRKDCP78527 ISM1-201ENST00000262487 2593 ntAPPRIS P1 TSL 5 BASIC10.28□□□□□ -0.76
PRKDCP78527 SH2D3C-213ENST00000629203 2478 ntTSL 2 BASIC10.28□□□□□ -0.76
PRKDCP78527 HNRNPA1-201ENST00000330752 1294 ntTSL 5 BASIC10.28□□□□□ -0.76
PRKDCP78527 FCN2-202ENST00000350339 943 ntAPPRIS ALT2 TSL 5 BASIC10.28□□□□□ -0.76
PRKDCP78527 NME2-201ENST00000393183 568 ntTSL 2 BASIC10.28□□□□□ -0.76
PRKDCP78527 PNLIP-201ENST00000369221 1483 ntAPPRIS P1 TSL 1 (best) BASIC10.28□□□□□ -0.76
PRKDCP78527 TCP11L1-201ENST00000334274 2817 ntAPPRIS P1 TSL 1 (best) BASIC10.28□□□□□ -0.76
PRKDCP78527 DRC3-203ENST00000399187 2008 ntAPPRIS P1 TSL 1 (best) BASIC10.28□□□□□ -0.76
PRKDCP78527 PITPNA-201ENST00000313486 3912 ntAPPRIS P2 TSL 5 BASIC10.28□□□□□ -0.76
PRKDCP78527 JMJD4-206ENST00000615711 2591 ntTSL 1 (best) BASIC10.28□□□□□ -0.76
PRKDCP78527 SLC39A1-211ENST00000621013 2322 ntAPPRIS P1 TSL 2 BASIC10.28□□□□□ -0.76
PRKDCP78527 NFYC-215ENST00000456393 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC10.28□□□□□ -0.76
PRKDCP78527 LOH12CR2-201ENST00000381800 1540 ntTSL 1 (best) BASIC10.27□□□□□ -0.76
PRKDCP78527 ZNF805-201ENST00000354309 2396 ntTSL 5 BASIC10.27□□□□□ -0.76
PRKDCP78527 ZNF821-203ENST00000446827 1822 ntTSL 1 (best) BASIC10.27□□□□□ -0.76
PRKDCP78527 TRAPPC4-202ENST00000434101 794 ntTSL 2 BASIC10.27□□□□□ -0.76
PRKDCP78527 CUTA-204ENST00000440279 822 ntAPPRIS P3 TSL 1 (best) BASIC10.27□□□□□ -0.76
PRKDCP78527 CNBP-202ENST00000441626 1040 ntTSL 2 BASIC10.27□□□□□ -0.76
PRKDCP78527 SOX2-OT-209ENST00000485035 561 ntTSL 4 BASIC10.27□□□□□ -0.76
PRKDCP78527 AC108112.1-201ENST00000505567 659 ntTSL 5 BASIC10.27□□□□□ -0.76
PRKDCP78527 KCNE3-202ENST00000525550 935 ntAPPRIS P1 TSL 1 (best) BASIC10.27□□□□□ -0.76
PRKDCP78527 ZNF816-208ENST00000535506 529 ntTSL 4 BASIC10.27□□□□□ -0.76
PRKDCP78527 AC007610.1-201ENST00000568130 498 ntTSL 3 BASIC10.27□□□□□ -0.76
PRKDCP78527 SOX2-OT-222ENST00000595084 853 ntTSL 5 BASIC10.27□□□□□ -0.76
PRKDCP78527 SOX2-OT-232ENST00000600386 792 ntTSL 5 BASIC10.27□□□□□ -0.76
PRKDCP78527 INTS11-248ENST00000545578 2263 ntTSL 2 BASIC10.27□□□□□ -0.76
PRKDCP78527 CELF4-202ENST00000361795 1853 ntAPPRIS ALT1 TSL 2 BASIC10.27□□□□□ -0.76
PRKDCP78527 AC006019.1-201ENST00000425591 2470 ntTSL 2 BASIC10.27□□□□□ -0.76
PRKDCP78527 DAO-208ENST00000551281 1345 ntTSL 1 (best) BASIC10.27□□□□□ -0.76
PRKDCP78527 AC069061.4-201ENST00000581294 1347 ntBASIC10.27□□□□□ -0.76
PRKDCP78527 PRKAG1-217ENST00000552212 1497 ntTSL 2 BASIC10.27□□□□□ -0.76
PRKDCP78527 POLR1D-212ENST00000630983 1931 ntTSL 5 BASIC10.27□□□□□ -0.76
PRKDCP78527 RFWD2-204ENST00000367669 3033 ntAPPRIS P1 TSL 1 (best) BASIC10.27□□□□□ -0.77
PRKDCP78527 IQCF4-203ENST00000428561 420 ntBASIC10.27□□□□□ -0.77
PRKDCP78527 VDAC1P11-201ENST00000458323 852 ntBASIC10.27□□□□□ -0.77
PRKDCP78527 AC104117.4-201ENST00000521486 847 ntBASIC10.27□□□□□ -0.77
PRKDCP78527 LIMD2-210ENST00000582055 509 ntTSL 2 BASIC10.27□□□□□ -0.77
PRKDCP78527 DRC3-201ENST00000313838 2064 ntAPPRIS P1 TSL 5 BASIC10.27□□□□□ -0.77
PRKDCP78527 PARD3-201ENST00000340077 3518 ntTSL 1 (best) BASIC10.27□□□□□ -0.77
PRKDCP78527 ADCYAP1R1-204ENST00000409489 1761 ntTSL 5 BASIC10.27□□□□□ -0.77
PRKDCP78527 KYAT1-202ENST00000320665 1623 ntTSL 2 BASIC10.27□□□□□ -0.77
PRKDCP78527 AC104809.1-201ENST00000425110 2345 ntTSL 2 BASIC10.27□□□□□ -0.77
PRKDCP78527 FRMD5-209ENST00000484674 2319 ntTSL 2 BASIC10.27□□□□□ -0.77
PRKDCP78527 CACFD1-201ENST00000291722 2688 ntTSL 2 BASIC10.27□□□□□ -0.77
Retrieved 100 of 98,524 protein–RNA pairs in 132.5 ms