Protein–RNA interactions for Protein: P55287

CDH11, Cadherin-11, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH11P55287 ATE1-202ENST00000369040 4803 ntTSL 2 BASIC13.71□□□□□ -0.21
CDH11P55287 CTSB-219ENST00000530640 1389 ntAPPRIS P1 TSL 5 BASIC13.71□□□□□ -0.21
CDH11P55287 KIAA0319-204ENST00000537886 6622 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.21
CDH11P55287 TGFB1I1-202ENST00000394858 1803 ntAPPRIS P3 TSL 1 (best) BASIC13.71□□□□□ -0.21
CDH11P55287 ZNF133-203ENST00000377671 2701 ntAPPRIS P3 TSL 1 (best) BASIC13.71□□□□□ -0.21
CDH11P55287 FAM103A1-201ENST00000304191 1568 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
CDH11P55287 CTSD-211ENST00000637387 1597 ntAPPRIS ALT2 TSL 5 BASIC13.71□□□□□ -0.21
CDH11P55287 PAX3-203ENST00000344493 3109 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
CDH11P55287 LINC01138-206ENST00000622328 2212 ntTSL 2 BASIC13.71□□□□□ -0.21
CDH11P55287 TFR2-201ENST00000223051 2888 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
CDH11P55287 RPS28-203ENST00000600659 1326 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
CDH11P55287 OPN4-202ENST00000372071 2401 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
CDH11P55287 SLC12A7-201ENST00000264930 5280 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
CDH11P55287 AC009690.1-201ENST00000379915 4374 ntAPPRIS P1 TSL 2 BASIC13.71□□□□□ -0.21
CDH11P55287 AL121723.1-201ENST00000445194 1519 ntBASIC13.71□□□□□ -0.21
CDH11P55287 POMK-203ENST00000614426 1527 ntAPPRIS P1 TSL 4 BASIC13.71□□□□□ -0.21
CDH11P55287 AC011899.2-202ENST00000438047 4302 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
CDH11P55287 TMPRSS2-202ENST00000398585 3240 ntTSL 2 BASIC13.71□□□□□ -0.21
CDH11P55287 BRAP-201ENST00000327551 1947 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
CDH11P55287 ACSL1-201ENST00000281455 3832 ntAPPRIS P3 TSL 1 (best) BASIC13.71□□□□□ -0.21
CDH11P55287 TSPO-202ENST00000337554 881 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
CDH11P55287 KIAA0907-201ENST00000368319 1155 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
CDH11P55287 ZDHHC12-201ENST00000372663 1129 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
CDH11P55287 HOPX-203ENST00000381255 1164 ntAPPRIS P1 TSL 2 BASIC13.71□□□□□ -0.21
CDH11P55287 MAGEC1-202ENST00000406005 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.21
CDH11P55287 CC2D2B-203ENST00000423344 1241 ntTSL 2 BASIC13.71□□□□□ -0.21
CDH11P55287 AC096536.1-201ENST00000443284 440 ntTSL 2 BASIC13.71□□□□□ -0.21
CDH11P55287 AC124944.1-201ENST00000448113 625 ntTSL 2 BASIC13.71□□□□□ -0.21
CDH11P55287 INE1-201ENST00000456273 945 ntBASIC13.71□□□□□ -0.21
CDH11P55287 MEIS3P1-201ENST00000495167 958 ntBASIC13.71□□□□□ -0.21
CDH11P55287 ZNF331-217ENST00000512387 2130 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
CDH11P55287 AC009163.1-201ENST00000530512 573 ntTSL 4 BASIC13.71□□□□□ -0.21
CDH11P55287 AP006621.2-201ENST00000533938 284 ntTSL 3 BASIC13.71□□□□□ -0.21
CDH11P55287 HOPX-210ENST00000553379 1001 ntAPPRIS P1 TSL 2 BASIC13.71□□□□□ -0.21
CDH11P55287 HOPX-212ENST00000555760 1139 ntAPPRIS P1 TSL 3 BASIC13.71□□□□□ -0.21
CDH11P55287 HOPX-213ENST00000556376 1064 ntAPPRIS P1 TSL 3 BASIC13.71□□□□□ -0.21
CDH11P55287 YPEL2-205ENST00000585166 881 ntAPPRIS P1 TSL 5 BASIC13.71□□□□□ -0.21
CDH11P55287 HIST1H2BO-201ENST00000616182 381 ntAPPRIS P1 BASIC13.71□□□□□ -0.21
CDH11P55287 CKMT1A-208ENST00000626814 1073 ntTSL 5 BASIC13.71□□□□□ -0.21
CDH11P55287 CRYM-201ENST00000219599 1471 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
CDH11P55287 CD209-207ENST00000593660 1497 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.21
CDH11P55287 TP73-209ENST00000603362 1668 ntTSL 5 BASIC13.71□□□□□ -0.21
CDH11P55287 FSTL4-201ENST00000265342 5419 ntAPPRIS P1 TSL 5 BASIC13.71□□□□□ -0.21
CDH11P55287 RBPMS-202ENST00000320203 3110 ntAPPRIS P3 TSL 1 (best) BASIC13.71□□□□□ -0.21
CDH11P55287 KAT5-216ENST00000534650 1875 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
CDH11P55287 WNT7B-201ENST00000339464 3919 ntAPPRIS P2 TSL 1 (best) BASIC13.71□□□□□ -0.21
CDH11P55287 ATE1-201ENST00000224652 4930 ntAPPRIS P5 TSL 1 (best) BASIC13.71□□□□□ -0.22
CDH11P55287 RAPH1-202ENST00000319170 9808 ntAPPRIS P4 TSL 1 (best) BASIC13.71□□□□□ -0.22
CDH11P55287 PIGT-202ENST00000279036 2245 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
CDH11P55287 AL031280.1-201ENST00000436991 2224 ntTSL 2 BASIC13.71□□□□□ -0.22
CDH11P55287 AICDA-201ENST00000229335 2819 ntAPPRIS P2 TSL 1 (best) BASIC13.71□□□□□ -0.22
CDH11P55287 RTF1-201ENST00000389629 5021 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
CDH11P55287 PLA2G16-201ENST00000323646 2594 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
CDH11P55287 CNN2-201ENST00000263097 2179 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
CDH11P55287 CNN2-205ENST00000562958 2194 ntTSL 2 BASIC13.71□□□□□ -0.22
CDH11P55287 BARHL2-201ENST00000370445 1979 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
CDH11P55287 ADCYAP1R1-204ENST00000409489 1761 ntTSL 5 BASIC13.71□□□□□ -0.22
CDH11P55287 SLC2A4-204ENST00000571308 1768 ntTSL 5 BASIC13.71□□□□□ -0.22
CDH11P55287 VPS9D1-201ENST00000389386 2748 ntAPPRIS P2 TSL 1 (best) BASIC13.7□□□□□ -0.22
CDH11P55287 TAOK2-204ENST00000543033 4072 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
CDH11P55287 PLTP-201ENST00000354050 1731 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
CDH11P55287 RBFADN-204ENST00000568911 5187 ntTSL 2 BASIC13.7□□□□□ -0.22
CDH11P55287 SUGP2-202ENST00000337018 3640 ntAPPRIS P3 TSL 1 (best) BASIC13.7□□□□□ -0.22
CDH11P55287 MOG-215ENST00000376888 1529 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
CDH11P55287 DTX3L-201ENST00000296161 5868 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
CDH11P55287 ZMYM3-204ENST00000373982 1867 ntTSL 5 BASIC13.7□□□□□ -0.22
CDH11P55287 PYGM-202ENST00000377432 2611 ntTSL 2 BASIC13.7□□□□□ -0.22
CDH11P55287 LLGL1-201ENST00000316843 4260 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
CDH11P55287 RAB38-201ENST00000243662 1465 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
CDH11P55287 PRRT2-202ENST00000358758 2567 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
CDH11P55287 GID4-201ENST00000268719 4237 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
CDH11P55287 LINC02538-201ENST00000609107 4569 ntTSL 2 BASIC13.7□□□□□ -0.22
CDH11P55287 VCAN-211ENST00000513984 1825 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
CDH11P55287 CDK2AP1-205ENST00000542174 1812 ntTSL 2 BASIC13.7□□□□□ -0.22
CDH11P55287 PRAMEF25-202ENST00000619661 1840 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
CDH11P55287 VHLL-201ENST00000339922 676 ntAPPRIS P1 BASIC13.7□□□□□ -0.22
CDH11P55287 LYPLA2-201ENST00000374501 1117 ntTSL 2 BASIC13.7□□□□□ -0.22
CDH11P55287 LRCOL1-201ENST00000376608 778 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
CDH11P55287 NUDT1-205ENST00000397048 783 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
CDH11P55287 AC067930.5-201ENST00000531730 1173 ntTSL 2 BASIC13.7□□□□□ -0.22
CDH11P55287 RNASEK-C17orf49-201ENST00000547302 900 ntAPPRIS P1 TSL 5 BASIC13.7□□□□□ -0.22
CDH11P55287 SAMD11P1-201ENST00000571429 661 ntBASIC13.7□□□□□ -0.22
CDH11P55287 AC005544.2-201ENST00000579138 229 ntTSL 5 BASIC13.7□□□□□ -0.22
CDH11P55287 AC005746.1-201ENST00000589244 672 ntTSL 3 BASIC13.7□□□□□ -0.22
CDH11P55287 LINC01703-202ENST00000602806 595 ntTSL 3 BASIC13.7□□□□□ -0.22
CDH11P55287 SPIN2A-203ENST00000614076 966 ntTSL 3 BASIC13.7□□□□□ -0.22
CDH11P55287 GPR39-203ENST00000622084 900 ntTSL 5 BASIC13.7□□□□□ -0.22
CDH11P55287 IER3IP1-202ENST00000639845 832 ntTSL 2 BASIC13.7□□□□□ -0.22
CDH11P55287 FGFR3-201ENST00000260795 4132 ntAPPRIS P3 TSL 1 (best) BASIC13.7□□□□□ -0.22
CDH11P55287 CMBL-201ENST00000296658 2335 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
CDH11P55287 PRKD1-202ENST00000415220 3189 ntAPPRIS ALT2 TSL 5 BASIC13.7□□□□□ -0.22
CDH11P55287 TFCP2-201ENST00000257915 3546 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
CDH11P55287 CHRNB4-201ENST00000261751 2623 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
CDH11P55287 SIGLEC6-202ENST00000346477 1940 ntAPPRIS ALT2 TSL 2 BASIC13.7□□□□□ -0.22
CDH11P55287 DYDC2-204ENST00000372199 2254 ntAPPRIS P3 TSL 1 (best) BASIC13.7□□□□□ -0.22
CDH11P55287 PRMT7-203ENST00000449359 2091 ntTSL 2 BASIC13.7□□□□□ -0.22
CDH11P55287 TRIM41-201ENST00000315073 3637 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
CDH11P55287 SPPL3-201ENST00000353487 4148 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
CDH11P55287 RNF170-209ENST00000534961 4116 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
CDH11P55287 MPZL1-203ENST00000392121 3421 ntTSL 2 BASIC13.7□□□□□ -0.22
Retrieved 100 of 98,524 protein–RNA pairs in 69.3 ms