Protein–RNA interactions for Protein: P55285

CDH6, Cadherin-6, humanhuman

Predictions only

Length 790 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH6P55285 HNRNPLL-205ENST00000409636 3980 ntTSL 2 BASIC15.5■□□□□ 0.07
CDH6P55285 AC092135.3-201ENST00000624151 1846 ntBASIC15.5■□□□□ 0.07
CDH6P55285 ATG5-201ENST00000343245 3092 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
CDH6P55285 TJP3-207ENST00000589378 3068 ntAPPRIS ALT2 TSL 2 BASIC15.49■□□□□ 0.07
CDH6P55285 FBXO42-201ENST00000375592 6202 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
CDH6P55285 KDELC2-201ENST00000323468 4312 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
CDH6P55285 ALDOA-209ENST00000563060 1550 ntAPPRIS P2 TSL 1 (best) BASIC15.49■□□□□ 0.07
CDH6P55285 CNOT10-201ENST00000328834 2815 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
CDH6P55285 CNOT9-201ENST00000273064 4079 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
CDH6P55285 LINC00163-201ENST00000434081 2155 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
CDH6P55285 TLL1-201ENST00000061240 6708 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
CDH6P55285 ZFP90-209ENST00000570495 4636 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
CDH6P55285 ABR-228ENST00000574437 3196 ntTSL 5 BASIC15.49■□□□□ 0.07
CDH6P55285 POLR2E-211ENST00000612655 1749 ntAPPRIS P1 TSL 3 BASIC15.49■□□□□ 0.07
CDH6P55285 ATL3-203ENST00000538786 1920 ntAPPRIS ALT2 TSL 2 BASIC15.49■□□□□ 0.07
CDH6P55285 RUBCNL-212ENST00000631139 1948 ntAPPRIS ALT2 TSL 2 BASIC15.49■□□□□ 0.07
CDH6P55285 STAG3L2-201ENST00000426587 2130 ntTSL 2 BASIC15.49■□□□□ 0.07
CDH6P55285 FAM219A-204ENST00000379081 3543 ntTSL 5 BASIC15.49■□□□□ 0.07
CDH6P55285 KIAA0895L-202ENST00000561621 3500 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
CDH6P55285 GATA3-202ENST00000379328 3078 ntAPPRIS ALT1 TSL 1 (best) BASIC15.49■□□□□ 0.07
CDH6P55285 CLIC5-208ENST00000544153 2051 ntTSL 2 BASIC15.49■□□□□ 0.07
CDH6P55285 AC007603.1-201ENST00000563124 2085 ntTSL 2 BASIC15.49■□□□□ 0.07
CDH6P55285 RN7SKP230-201ENST00000365642 335 ntBASIC15.49■□□□□ 0.07
CDH6P55285 TNNI1-203ENST00000367312 1100 ntAPPRIS P2 TSL 5 BASIC15.49■□□□□ 0.07
CDH6P55285 EDF1-203ENST00000371649 790 ntTSL 2 BASIC15.49■□□□□ 0.07
CDH6P55285 WDR38-201ENST00000373574 1252 ntAPPRIS P3 TSL 1 (best) BASIC15.49■□□□□ 0.07
CDH6P55285 GATD1-203ENST00000397472 790 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
CDH6P55285 AL512384.1-201ENST00000406683 331 ntBASIC15.49■□□□□ 0.07
CDH6P55285 AC233976.1-201ENST00000425150 451 ntTSL 3 BASIC15.49■□□□□ 0.07
CDH6P55285 AC099754.1-201ENST00000435884 454 ntTSL 3 BASIC15.49■□□□□ 0.07
CDH6P55285 INE1-201ENST00000456273 945 ntBASIC15.49■□□□□ 0.07
CDH6P55285 TMEM14B-204ENST00000461342 559 ntTSL 2 BASIC15.49■□□□□ 0.07
CDH6P55285 AC093904.1-201ENST00000474561 455 ntTSL 3 BASIC15.49■□□□□ 0.07
CDH6P55285 CSF1R-209ENST00000543093 921 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
CDH6P55285 RN7SL48P-201ENST00000579283 293 ntBASIC15.49■□□□□ 0.07
CDH6P55285 AC008481.3-201ENST00000585656 727 ntAPPRIS P1 TSL 5 BASIC15.49■□□□□ 0.07
CDH6P55285 AC015936.2-201ENST00000593177 259 ntBASIC15.49■□□□□ 0.07
CDH6P55285 CECR7-204ENST00000609932 568 ntTSL 2 BASIC15.49■□□□□ 0.07
CDH6P55285 SRP9-204ENST00000619790 377 ntTSL 2 BASIC15.49■□□□□ 0.07
CDH6P55285 ARID1B-222ENST00000637003 1290 ntTSL 5 BASIC15.49■□□□□ 0.07
CDH6P55285 AC105233.6-201ENST00000642093 218 ntBASIC15.49■□□□□ 0.07
CDH6P55285 TARSL2-201ENST00000335968 3610 ntAPPRIS P2 TSL 1 (best) BASIC15.49■□□□□ 0.07
CDH6P55285 HECW1-203ENST00000453890 5169 ntAPPRIS ALT2 TSL 2 BASIC15.49■□□□□ 0.07
CDH6P55285 PI4K2A-201ENST00000370631 4189 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
CDH6P55285 PRSS54-201ENST00000219301 1810 ntAPPRIS P1 TSL 5 BASIC15.49■□□□□ 0.07
CDH6P55285 AKAP7-204ENST00000431975 2954 ntAPPRIS P1 TSL 2 BASIC15.49■□□□□ 0.07
CDH6P55285 ITGBL1-207ENST00000622834 2369 ntTSL 5 BASIC15.49■□□□□ 0.07
CDH6P55285 ZMYND11-208ENST00000397962 2150 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
CDH6P55285 ASTN2-206ENST00000361477 4001 ntTSL 5 BASIC15.49■□□□□ 0.07
CDH6P55285 SLC41A3-204ENST00000383598 2330 ntAPPRIS P3 TSL 2 BASIC15.49■□□□□ 0.07
CDH6P55285 ZNF785-202ENST00000470110 2867 ntAPPRIS ALT2 TSL 2 BASIC15.49■□□□□ 0.07
CDH6P55285 MVK-214ENST00000629016 1591 ntTSL 5 BASIC15.49■□□□□ 0.07
CDH6P55285 PLAU-202ENST00000446342 2658 ntAPPRIS ALT2 TSL 2 BASIC15.49■□□□□ 0.07
CDH6P55285 NUP50-201ENST00000347635 5233 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
CDH6P55285 FDFT1-202ENST00000443614 1393 ntTSL 2 BASIC15.49■□□□□ 0.07
CDH6P55285 POLR2E-213ENST00000615234 2831 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
CDH6P55285 ALDOA-203ENST00000395248 2447 ntTSL 5 BASIC15.48■□□□□ 0.07
CDH6P55285 NCOR2-203ENST00000404621 8520 ntAPPRIS ALT2 TSL 1 (best) BASIC15.48■□□□□ 0.07
CDH6P55285 AC011840.2-201ENST00000563063 1520 ntBASIC15.48■□□□□ 0.07
CDH6P55285 MLF1-201ENST00000355893 2203 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
CDH6P55285 ICAM2-201ENST00000412356 1334 ntAPPRIS P1 TSL 5 BASIC15.48■□□□□ 0.07
CDH6P55285 LINC00639-201ENST00000553932 4496 ntTSL 2 BASIC15.48■□□□□ 0.07
CDH6P55285 HPGD-202ENST00000296522 3027 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
CDH6P55285 RNF123-202ENST00000432042 2670 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
CDH6P55285 PRICKLE1-201ENST00000345127 5902 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
CDH6P55285 KLHDC8A-202ENST00000367156 3177 ntAPPRIS P1 TSL 2 BASIC15.48■□□□□ 0.07
CDH6P55285 AC027601.5-201ENST00000624065 2482 ntBASIC15.48■□□□□ 0.07
CDH6P55285 TOMM5-201ENST00000321301 751 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
CDH6P55285 COX5BP8-201ENST00000416911 349 ntBASIC15.48■□□□□ 0.07
CDH6P55285 AC021188.1-201ENST00000421534 740 ntTSL 3 BASIC15.48■□□□□ 0.07
CDH6P55285 ARL6IP4-207ENST00000426960 910 ntAPPRIS ALT2 TSL 3 BASIC15.48■□□□□ 0.07
CDH6P55285 AL354761.2-202ENST00000430816 546 ntAPPRIS P1 TSL 5 BASIC15.48■□□□□ 0.07
CDH6P55285 TMEM107-204ENST00000437139 747 ntAPPRIS ALT1 TSL 1 (best) BASIC15.48■□□□□ 0.07
CDH6P55285 LRRC74B-201ENST00000442047 1179 ntAPPRIS P1 TSL 5 BASIC15.48■□□□□ 0.07
CDH6P55285 HOXB3-204ENST00000465120 943 ntTSL 3 BASIC15.48■□□□□ 0.07
CDH6P55285 MESTP3-201ENST00000503460 968 ntBASIC15.48■□□□□ 0.07
CDH6P55285 MRNIP-212ENST00000520698 902 ntAPPRIS ALT2 TSL 2 BASIC15.48■□□□□ 0.07
CDH6P55285 CCKBR-202ENST00000525014 792 ntTSL 4 BASIC15.48■□□□□ 0.07
CDH6P55285 IL32-218ENST00000530890 774 ntAPPRIS ALT2 TSL 2 BASIC15.48■□□□□ 0.07
CDH6P55285 AC131206.1-201ENST00000538078 1211 ntBASIC15.48■□□□□ 0.07
CDH6P55285 FXYD6-216ENST00000584230 566 ntAPPRIS ALT1 TSL 3 BASIC15.48■□□□□ 0.07
CDH6P55285 AC138474.1-201ENST00000586630 523 ntTSL 3 BASIC15.48■□□□□ 0.07
CDH6P55285 AC008750.3-201ENST00000601148 437 ntTSL 5 BASIC15.48■□□□□ 0.07
CDH6P55285 SPATA21-206ENST00000612240 603 ntTSL 5 BASIC15.48■□□□□ 0.07
CDH6P55285 RUFY1-204ENST00000437570 2642 ntAPPRIS ALT2 TSL 2 BASIC15.48■□□□□ 0.07
CDH6P55285 STARD8-202ENST00000374597 4820 ntAPPRIS P3 TSL 1 (best) BASIC15.48■□□□□ 0.07
CDH6P55285 AATBC-201ENST00000400385 4598 ntTSL 2 BASIC15.48■□□□□ 0.07
CDH6P55285 GOPC-201ENST00000052569 4590 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
CDH6P55285 PLEKHA4-201ENST00000263265 3088 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
CDH6P55285 GCNT7-201ENST00000243913 2064 ntTSL 2 BASIC15.48■□□□□ 0.07
CDH6P55285 THY1-206ENST00000528522 2050 ntAPPRIS P1 TSL 2 BASIC15.48■□□□□ 0.07
CDH6P55285 MIIP-201ENST00000235332 1573 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
CDH6P55285 TBP-206ENST00000540980 1701 ntAPPRIS ALT2 TSL 2 BASIC15.48■□□□□ 0.07
CDH6P55285 CDK5RAP2-202ENST00000360190 5985 ntAPPRIS ALT2 TSL 1 (best) BASIC15.48■□□□□ 0.07
CDH6P55285 AC020910.5-201ENST00000623668 1865 ntBASIC15.48■□□□□ 0.07
CDH6P55285 IL9R-202ENST00000369423 2032 ntAPPRIS ALT2 TSL 1 (best) BASIC15.48■□□□□ 0.07
CDH6P55285 FAM172A-204ENST00000505869 1387 ntTSL 2 BASIC15.48■□□□□ 0.07
CDH6P55285 CSTB-201ENST00000291568 2164 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
CDH6P55285 ATXN10-202ENST00000381061 3135 ntTSL 2 BASIC15.48■□□□□ 0.07
CDH6P55285 CDH20-201ENST00000262717 3882 ntAPPRIS P1 TSL 2 BASIC15.47■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 47 ms