Protein–RNA interactions for Protein: P54868

HMGCS2, Hydroxymethylglutaryl-CoA synthase, mitochondrial, humanhuman

Predictions only

Length 508 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS2P54868 TREX1-202ENST00000444177 1200 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
HMGCS2P54868 CHCHD2P9-201ENST00000461726 456 ntBASIC16.97■□□□□ 0.31
HMGCS2P54868 PGAP2-208ENST00000464229 863 ntTSL 3 BASIC16.97■□□□□ 0.31
HMGCS2P54868 MYLK-AS1-202ENST00000470449 760 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
HMGCS2P54868 RHEB-207ENST00000496004 744 ntTSL 2 BASIC16.97■□□□□ 0.31
HMGCS2P54868 PLEKHA8P1-203ENST00000545609 277 ntTSL 3 BASIC16.97■□□□□ 0.31
HMGCS2P54868 AC007376.2-201ENST00000556271 540 ntTSL 3 BASIC16.97■□□□□ 0.31
HMGCS2P54868 MIR4649-201ENST00000582839 64 ntBASIC16.97■□□□□ 0.31
HMGCS2P54868 AC009084.3-201ENST00000623356 437 ntBASIC16.97■□□□□ 0.31
HMGCS2P54868 KDM6A-202ENST00000382899 5789 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
HMGCS2P54868 TLE3-223ENST00000560939 3021 ntTSL 5 BASIC16.97■□□□□ 0.31
HMGCS2P54868 CELF4-223ENST00000603232 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC16.97■□□□□ 0.31
HMGCS2P54868 TOMM22-201ENST00000216034 2040 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
HMGCS2P54868 NCBP2-206ENST00000447325 2216 ntTSL 2 BASIC16.97■□□□□ 0.31
HMGCS2P54868 SF1-209ENST00000433274 2317 ntTSL 2 BASIC16.97■□□□□ 0.31
HMGCS2P54868 KCNN3-202ENST00000358505 1658 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
HMGCS2P54868 AC006504.5-208ENST00000588784 2401 ntBASIC16.97■□□□□ 0.31
HMGCS2P54868 EXOC3L1-201ENST00000314586 2510 ntAPPRIS P1 TSL 2 BASIC16.97■□□□□ 0.31
HMGCS2P54868 ZEB1-AS1-208ENST00000607166 2503 ntBASIC16.97■□□□□ 0.31
HMGCS2P54868 FAM53B-202ENST00000337318 5431 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
HMGCS2P54868 MTMR9-202ENST00000526292 1960 ntTSL 2 BASIC16.97■□□□□ 0.31
HMGCS2P54868 ABCB6-201ENST00000265316 3016 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
HMGCS2P54868 TMEM132D-202ENST00000422113 5776 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
HMGCS2P54868 UVSSA-206ENST00000507531 2597 ntAPPRIS P2 TSL 1 (best) BASIC16.96■□□□□ 0.31
HMGCS2P54868 PLTP-201ENST00000354050 1731 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
HMGCS2P54868 SH3KBP1-201ENST00000379697 1944 ntTSL 5 BASIC16.96■□□□□ 0.31
HMGCS2P54868 AL162457.1-201ENST00000317652 2000 ntTSL 2 BASIC16.96■□□□□ 0.31
HMGCS2P54868 STUM-201ENST00000366788 7705 ntAPPRIS P2 TSL 5 BASIC16.96■□□□□ 0.31
HMGCS2P54868 ZNF619-201ENST00000314686 2233 ntTSL 2 BASIC16.96■□□□□ 0.31
HMGCS2P54868 SDC4-201ENST00000372733 2613 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
HMGCS2P54868 KCNK4-TEX40-201ENST00000539086 2733 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
HMGCS2P54868 Metazoa_SRP.6-201ENST00000366384 298 ntBASIC16.96■□□□□ 0.31
HMGCS2P54868 CELA2B-201ENST00000375910 923 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
HMGCS2P54868 GNRH2-204ENST00000380347 758 ntAPPRIS ALT2 TSL 5 BASIC16.96■□□□□ 0.31
HMGCS2P54868 EVA1A-204ENST00000410071 777 ntAPPRIS P2 TSL 3 BASIC16.96■□□□□ 0.31
HMGCS2P54868 RHBDD2-203ENST00000428119 1274 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
HMGCS2P54868 SOX9-AS1-207ENST00000446332 443 ntTSL 2 BASIC16.96■□□□□ 0.31
HMGCS2P54868 RASA3-IT1-201ENST00000454005 380 ntTSL 3 BASIC16.96■□□□□ 0.31
HMGCS2P54868 DUX4L50-201ENST00000455245 715 ntBASIC16.96■□□□□ 0.31
HMGCS2P54868 AC022858.1-201ENST00000521685 685 ntTSL 3 BASIC16.96■□□□□ 0.31
HMGCS2P54868 AP000842.2-201ENST00000533033 517 ntTSL 4 BASIC16.96■□□□□ 0.31
HMGCS2P54868 C12orf10-207ENST00000549488 840 ntTSL 5 BASIC16.96■□□□□ 0.31
HMGCS2P54868 AC137723.1-201ENST00000584705 709 ntTSL 3 BASIC16.96■□□□□ 0.31
HMGCS2P54868 GMFG-209ENST00000600322 622 ntTSL 5 BASIC16.96■□□□□ 0.31
HMGCS2P54868 AL022334.2-201ENST00000610000 484 ntBASIC16.96■□□□□ 0.31
HMGCS2P54868 LINC00923-205ENST00000615399 932 ntTSL 5 BASIC16.96■□□□□ 0.31
HMGCS2P54868 CCDC197-205ENST00000636493 1279 ntAPPRIS P5 TSL 5 BASIC16.96■□□□□ 0.31
HMGCS2P54868 NR1H3-203ENST00000405853 1480 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
HMGCS2P54868 IRF2BP2-202ENST00000366610 4615 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.31
HMGCS2P54868 NFYA-202ENST00000353205 1660 ntTSL 5 BASIC16.96■□□□□ 0.31
HMGCS2P54868 PRX-201ENST00000291825 5502 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
HMGCS2P54868 AL390038.1-201ENST00000419814 2481 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
HMGCS2P54868 AL359258.1-201ENST00000438965 2481 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
HMGCS2P54868 ANKMY2-201ENST00000306999 2555 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
HMGCS2P54868 SLC35F2-204ENST00000525815 3170 ntAPPRIS P2 TSL 1 (best) BASIC16.96■□□□□ 0.31
HMGCS2P54868 LARP6-201ENST00000299213 4469 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
HMGCS2P54868 SNAP91-205ENST00000439399 4452 ntAPPRIS P2 TSL 5 BASIC16.96■□□□□ 0.31
HMGCS2P54868 GTF2IRD1-203ENST00000455841 3315 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
HMGCS2P54868 STAC-201ENST00000273183 3227 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
HMGCS2P54868 SUPT20H-212ENST00000475892 2836 ntTSL 1 (best) BASIC16.96■□□□□ 0.3
HMGCS2P54868 LAD1-201ENST00000367313 2336 ntTSL 1 (best) BASIC16.96■□□□□ 0.3
HMGCS2P54868 AC007950.2-201ENST00000615045 2347 ntBASIC16.96■□□□□ 0.3
HMGCS2P54868 TSC22D3-201ENST00000315660 2213 ntTSL 1 (best) BASIC16.96■□□□□ 0.3
HMGCS2P54868 ZNF208-205ENST00000601773 2027 ntTSL 2 BASIC16.96■□□□□ 0.3
HMGCS2P54868 AC026904.3-201ENST00000636550 1530 ntTSL 5 BASIC16.96■□□□□ 0.3
HMGCS2P54868 CYP51A1P3-201ENST00000400072 1428 ntBASIC16.96■□□□□ 0.3
HMGCS2P54868 ZC3H7B-201ENST00000352645 5909 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
HMGCS2P54868 AC139712.1-201ENST00000378256 1875 ntBASIC16.95■□□□□ 0.3
HMGCS2P54868 FOXJ2-201ENST00000162391 5523 ntAPPRIS P2 TSL 1 (best) BASIC16.95■□□□□ 0.3
HMGCS2P54868 GLIDR-204ENST00000638724 1765 ntTSL 5 BASIC16.95■□□□□ 0.3
HMGCS2P54868 MAGEA12-201ENST00000357916 1664 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
HMGCS2P54868 PTGES3L-AARSD1-202ENST00000409103 1670 ntTSL 5 BASIC16.95■□□□□ 0.3
HMGCS2P54868 MLF1-201ENST00000355893 2203 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
HMGCS2P54868 PRR18-201ENST00000322583 3084 ntAPPRIS P2 BASIC16.95■□□□□ 0.3
HMGCS2P54868 ANO1-201ENST00000316296 2118 ntTSL 2 BASIC16.95■□□□□ 0.3
HMGCS2P54868 SAPCD1-208ENST00000415669 916 ntAPPRIS P2 TSL 1 (best) BASIC16.95■□□□□ 0.3
HMGCS2P54868 RPL13AP19-201ENST00000434320 584 ntBASIC16.95■□□□□ 0.3
HMGCS2P54868 IMPA1-203ENST00000449740 1180 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
HMGCS2P54868 FTH1P22-201ENST00000456305 520 ntBASIC16.95■□□□□ 0.3
HMGCS2P54868 KLHDC8A-203ENST00000460687 1022 ntTSL 5 BASIC16.95■□□□□ 0.3
HMGCS2P54868 CTBP2P4-201ENST00000513884 920 ntBASIC16.95■□□□□ 0.3
HMGCS2P54868 ANXA5-210ENST00000515017 1190 ntTSL 5 BASIC16.95■□□□□ 0.3
HMGCS2P54868 IGHVIII-5-2-201ENST00000522505 261 ntBASIC16.95■□□□□ 0.3
HMGCS2P54868 RNASEK-210ENST00000593646 566 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
HMGCS2P54868 CR589904.1-202ENST00000611154 660 ntTSL 5 BASIC16.95■□□□□ 0.3
HMGCS2P54868 HIST1H4I-201ENST00000615353 1294 ntAPPRIS P1 BASIC16.95■□□□□ 0.3
HMGCS2P54868 HIST1H4A-201ENST00000617569 312 ntAPPRIS P1 BASIC16.95■□□□□ 0.3
HMGCS2P54868 ABLIM3-206ENST00000506113 4569 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
HMGCS2P54868 AC138035.3-201ENST00000622706 2791 ntBASIC16.95■□□□□ 0.3
HMGCS2P54868 C1QTNF9-201ENST00000332018 1830 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
HMGCS2P54868 DDIAS-203ENST00000525361 1830 ntAPPRIS ALT2 TSL 2 BASIC16.95■□□□□ 0.3
HMGCS2P54868 SRPX-206ENST00000544439 1842 ntAPPRIS ALT2 TSL 2 BASIC16.95■□□□□ 0.3
HMGCS2P54868 PER1-201ENST00000317276 4707 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
HMGCS2P54868 ADD1-204ENST00000398123 2361 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
HMGCS2P54868 NOX5-209ENST00000530406 2289 ntAPPRIS P4 TSL 1 (best) BASIC16.95■□□□□ 0.3
HMGCS2P54868 STK39-201ENST00000355999 3820 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
HMGCS2P54868 ALDH3B2-201ENST00000349015 2649 ntAPPRIS P1 TSL 5 BASIC16.95■□□□□ 0.3
HMGCS2P54868 TBL2-201ENST00000305632 3161 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
HMGCS2P54868 BTBD8-201ENST00000342818 1412 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
HMGCS2P54868 INHBE-201ENST00000266646 2429 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 47.3 ms