Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 AC092614.1-201ENST00000419640 909 ntTSL 3 BASIC15.41■□□□□ 0.06
PTPN9P43378 NCK2-206ENST00000522586 490 ntTSL 5 BASIC15.41■□□□□ 0.06
PTPN9P43378 TPD52L1-214ENST00000534199 811 ntTSL 2 BASIC15.41■□□□□ 0.06
PTPN9P43378 NR2C2AP-207ENST00000544883 899 ntTSL 2 BASIC15.41■□□□□ 0.06
PTPN9P43378 HILS1-202ENST00000545329 423 ntBASIC15.41■□□□□ 0.06
PTPN9P43378 IFI27L1-210ENST00000556381 804 ntTSL 5 BASIC15.41■□□□□ 0.06
PTPN9P43378 CX3CL1-203ENST00000564948 563 ntTSL 3 BASIC15.41■□□□□ 0.06
PTPN9P43378 MARK4-202ENST00000300843 5209 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
PTPN9P43378 TMPRSS6-202ENST00000381792 3260 ntAPPRIS ALT2 TSL 5 BASIC15.41■□□□□ 0.06
PTPN9P43378 AL928970.1-201ENST00000422679 2923 ntTSL 5 BASIC15.41■□□□□ 0.06
PTPN9P43378 LINC01648-201ENST00000445180 1519 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
PTPN9P43378 LMAN1-201ENST00000251047 5521 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
PTPN9P43378 STYXL1-201ENST00000248600 1415 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
PTPN9P43378 YTHDC1-202ENST00000355665 3244 ntAPPRIS P3 TSL 1 (best) BASIC15.41■□□□□ 0.06
PTPN9P43378 ADAM15-204ENST00000359280 2874 ntAPPRIS ALT2 TSL 1 (best) BASIC15.41■□□□□ 0.06
PTPN9P43378 SH2D3C-206ENST00000429553 2794 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
PTPN9P43378 AC026748.1-201ENST00000624349 3251 ntBASIC15.41■□□□□ 0.06
PTPN9P43378 C1QTNF9-201ENST00000332018 1830 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
PTPN9P43378 AC090505.1-201ENST00000430515 1834 ntBASIC15.4■□□□□ 0.06
PTPN9P43378 CDK2AP1-205ENST00000542174 1812 ntTSL 2 BASIC15.4■□□□□ 0.06
PTPN9P43378 STOML1-206ENST00000561656 1833 ntTSL 3 BASIC15.4■□□□□ 0.06
PTPN9P43378 F2RL1-201ENST00000296677 2914 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
PTPN9P43378 GALNTL6-205ENST00000511251 2905 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
PTPN9P43378 OPCML-IT1-201ENST00000533859 2936 ntTSL 2 BASIC15.4■□□□□ 0.06
PTPN9P43378 LINC01185-202ENST00000452343 1705 ntTSL 2 BASIC15.4■□□□□ 0.06
PTPN9P43378 RNF135-202ENST00000328381 2892 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
PTPN9P43378 SNX18-202ENST00000343017 3140 ntBASIC15.4■□□□□ 0.06
PTPN9P43378 OGFRL1-201ENST00000370435 8391 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
PTPN9P43378 STRA6-205ENST00000432245 1889 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
PTPN9P43378 LINC00839-202ENST00000429940 2253 ntTSL 2 BASIC15.4■□□□□ 0.06
PTPN9P43378 RGS6-217ENST00000555571 1764 ntAPPRIS P3 TSL 1 (best) BASIC15.4■□□□□ 0.06
PTPN9P43378 KRTAP19-7-201ENST00000334849 440 ntAPPRIS P1 BASIC15.4■□□□□ 0.06
PTPN9P43378 MRPL23-204ENST00000397297 613 ntTSL 2 BASIC15.4■□□□□ 0.06
PTPN9P43378 THAP4-202ENST00000402136 785 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
PTPN9P43378 AL157392.1-201ENST00000412388 373 ntTSL 2 BASIC15.4■□□□□ 0.06
PTPN9P43378 RALY-AS1-203ENST00000440595 660 ntTSL 3 BASIC15.4■□□□□ 0.06
PTPN9P43378 IQCF3-202ENST00000440739 505 ntAPPRIS P1 TSL 2 BASIC15.4■□□□□ 0.06
PTPN9P43378 AC022210.1-201ENST00000449856 793 ntBASIC15.4■□□□□ 0.06
PTPN9P43378 AL035414.1-201ENST00000451327 857 ntBASIC15.4■□□□□ 0.06
PTPN9P43378 AC119751.2-201ENST00000504529 210 ntBASIC15.4■□□□□ 0.06
PTPN9P43378 AP006547.1-201ENST00000563435 692 ntBASIC15.4■□□□□ 0.06
PTPN9P43378 AP005482.1-201ENST00000563722 1273 ntBASIC15.4■□□□□ 0.06
PTPN9P43378 OPN4-202ENST00000372071 2401 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
PTPN9P43378 PFKFB4-201ENST00000232375 3586 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
PTPN9P43378 CDH24-202ENST00000397359 3552 ntTSL 5 BASIC15.4■□□□□ 0.06
PTPN9P43378 PDE1B-207ENST00000550620 2150 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
PTPN9P43378 C11orf16-201ENST00000326053 1908 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
PTPN9P43378 MCRS1-211ENST00000550165 1936 ntAPPRIS P1 TSL 5 BASIC15.4■□□□□ 0.06
PTPN9P43378 AC026992.2-202ENST00000565312 1934 ntTSL 5 BASIC15.4■□□□□ 0.06
PTPN9P43378 DFNA5-201ENST00000342947 2590 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
PTPN9P43378 FLI1-207ENST00000534087 3859 ntTSL 2 BASIC15.4■□□□□ 0.06
PTPN9P43378 PTPN21-201ENST00000328736 6089 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
PTPN9P43378 ACE-201ENST00000290863 2479 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
PTPN9P43378 AC215219.1-201ENST00000400706 1817 ntBASIC15.4■□□□□ 0.06
PTPN9P43378 ALPL-207ENST00000540617 2131 ntAPPRIS ALT2 TSL 2 BASIC15.4■□□□□ 0.06
PTPN9P43378 SEPT12-201ENST00000268231 1469 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
PTPN9P43378 ADAMTS18-201ENST00000282849 5913 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
PTPN9P43378 RNF166-210ENST00000568683 1768 ntTSL 3 BASIC15.39■□□□□ 0.05
PTPN9P43378 DLX6-202ENST00000518156 2304 ntAPPRIS P2 TSL 1 (best) BASIC15.39■□□□□ 0.05
PTPN9P43378 ABCC1-201ENST00000399408 6594 ntTSL 5 BASIC15.39■□□□□ 0.05
PTPN9P43378 ABCC1-202ENST00000399410 6552 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
PTPN9P43378 COL9A1-204ENST00000370496 1372 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
PTPN9P43378 KRT8P28-201ENST00000433288 1390 ntBASIC15.39■□□□□ 0.05
PTPN9P43378 FANCG-201ENST00000378643 2631 ntAPPRIS P2 TSL 1 (best) BASIC15.39■□□□□ 0.05
PTPN9P43378 KCNJ2-202ENST00000535240 1685 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
PTPN9P43378 EYA4-205ENST00000430974 2364 ntTSL 2 BASIC15.39■□□□□ 0.05
PTPN9P43378 GGT1-202ENST00000400380 2540 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
PTPN9P43378 PCK2-203ENST00000545054 2505 ntTSL 2 BASIC15.39■□□□□ 0.05
PTPN9P43378 DPP6-203ENST00000404039 4798 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
PTPN9P43378 SAFB2-201ENST00000252542 3371 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
PTPN9P43378 IL1RAP-209ENST00000422940 1957 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
PTPN9P43378 CRB2-201ENST00000359999 3659 ntTSL 2 BASIC15.39■□□□□ 0.05
PTPN9P43378 GBGT1-202ENST00000372038 847 ntTSL 3 BASIC15.39■□□□□ 0.05
PTPN9P43378 STAM-202ENST00000377524 2972 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
PTPN9P43378 AL391361.3-201ENST00000420601 379 ntTSL 2 BASIC15.39■□□□□ 0.05
PTPN9P43378 PTPA-215ENST00000432124 567 ntTSL 4 BASIC15.39■□□□□ 0.05
PTPN9P43378 HIST2H2BB-201ENST00000449108 381 ntBASIC15.39■□□□□ 0.05
PTPN9P43378 CICP12-201ENST00000455801 843 ntBASIC15.39■□□□□ 0.05
PTPN9P43378 LCN10-203ENST00000474369 564 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.05
PTPN9P43378 AC104596.1-201ENST00000507826 579 ntTSL 4 BASIC15.39■□□□□ 0.05
PTPN9P43378 LLPH-AS1-201ENST00000510317 623 ntTSL 4 BASIC15.39■□□□□ 0.05
PTPN9P43378 AC136475.5-202ENST00000524824 587 ntTSL 4 BASIC15.39■□□□□ 0.05
PTPN9P43378 C11orf98-201ENST00000524958 654 ntAPPRIS P1 TSL 2 BASIC15.39■□□□□ 0.05
PTPN9P43378 AC090099.4-201ENST00000527671 1027 ntTSL 5 BASIC15.39■□□□□ 0.05
PTPN9P43378 AF111169.4-201ENST00000556368 749 ntTSL 2 BASIC15.39■□□□□ 0.05
PTPN9P43378 AL110118.2-203ENST00000557574 554 ntAPPRIS P1 TSL 4 BASIC15.39■□□□□ 0.05
PTPN9P43378 AF111167.2-202ENST00000558267 599 ntTSL 4 BASIC15.39■□□□□ 0.05
PTPN9P43378 LINC01887-202ENST00000584734 860 ntTSL 3 BASIC15.39■□□□□ 0.05
PTPN9P43378 AL391650.2-201ENST00000640097 941 ntTSL 5 BASIC15.39■□□□□ 0.05
PTPN9P43378 MRPS7-201ENST00000245539 1406 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
PTPN9P43378 S1PR2-201ENST00000590320 3582 ntAPPRIS P1 TSL 3 BASIC15.39■□□□□ 0.05
PTPN9P43378 PRPSAP2-216ENST00000536323 1872 ntTSL 2 BASIC15.39■□□□□ 0.05
PTPN9P43378 CYTH1-201ENST00000361101 3311 ntAPPRIS ALT1 TSL 1 (best) BASIC15.39■□□□□ 0.05
PTPN9P43378 CYTH1-202ENST00000446868 3311 ntAPPRIS ALT1 TSL 5 BASIC15.39■□□□□ 0.05
PTPN9P43378 FOS-201ENST00000303562 2158 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
PTPN9P43378 RALGDS-202ENST00000372050 3634 ntAPPRIS P3 TSL 1 (best) BASIC15.39■□□□□ 0.05
PTPN9P43378 ITSN1-204ENST00000381285 6107 ntTSL 5 BASIC15.39■□□□□ 0.05
PTPN9P43378 PEF1-201ENST00000373703 1629 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
PTPN9P43378 MYO15B-237ENST00000642007 4893 ntBASIC15.39■□□□□ 0.05
PTPN9P43378 RPS6KL1-201ENST00000354625 5195 ntAPPRIS P1 TSL 2 BASIC15.39■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 46.9 ms