Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC17.39■□□□□ 0.37
BRCA1P38398 ZNF208-205ENST00000601773 2027 ntTSL 2 BASIC17.39■□□□□ 0.37
BRCA1P38398 INHBE-201ENST00000266646 2429 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
BRCA1P38398 ZNF706-201ENST00000311212 2615 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
BRCA1P38398 GLS2-201ENST00000311966 2623 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
BRCA1P38398 SARS-202ENST00000369923 1882 ntTSL 5 BASIC17.39■□□□□ 0.37
BRCA1P38398 NRCAM-217ENST00000613830 3025 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
BRCA1P38398 C19orf48-201ENST00000345523 1503 ntAPPRIS P1 TSL 2 BASIC17.39■□□□□ 0.37
BRCA1P38398 PAX6-264ENST00000640125 1375 ntTSL 5 BASIC17.38■□□□□ 0.37
BRCA1P38398 HMGA1-202ENST00000347617 1773 ntAPPRIS ALT1 TSL 1 (best) BASIC17.38■□□□□ 0.37
BRCA1P38398 SIAE-206ENST00000618733 1980 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
BRCA1P38398 MAP3K20-203ENST00000409176 2572 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
BRCA1P38398 PTGDR-201ENST00000306051 2942 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
BRCA1P38398 U3.5-201ENST00000363448 216 ntBASIC17.38■□□□□ 0.37
BRCA1P38398 COA6-203ENST00000366615 710 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
BRCA1P38398 SSR4-202ENST00000370085 526 ntTSL 2 BASIC17.38■□□□□ 0.37
BRCA1P38398 CBR3-AS1-202ENST00000427491 741 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
BRCA1P38398 GS1-124K5.4-201ENST00000445681 540 ntTSL 2 BASIC17.38■□□□□ 0.37
BRCA1P38398 AC093700.1-201ENST00000503348 717 ntBASIC17.38■□□□□ 0.37
BRCA1P38398 APOPT1-215ENST00000556253 783 ntTSL 3 BASIC17.38■□□□□ 0.37
BRCA1P38398 MKRN3-202ENST00000564592 629 ntTSL 3 BASIC17.38■□□□□ 0.37
BRCA1P38398 AC087741.1-204ENST00000573935 646 ntTSL 3 BASIC17.38■□□□□ 0.37
BRCA1P38398 CBR3-AS1-207ENST00000608641 777 ntTSL 5 BASIC17.38■□□□□ 0.37
BRCA1P38398 AC113385.2-201ENST00000614465 762 ntBASIC17.38■□□□□ 0.37
BRCA1P38398 EEF1AKMT3-201ENST00000300209 2563 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
BRCA1P38398 CIART-201ENST00000290363 1746 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
BRCA1P38398 FBXO44-204ENST00000376762 1734 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
BRCA1P38398 MGME1-201ENST00000377704 1781 ntTSL 3 BASIC17.38■□□□□ 0.37
BRCA1P38398 AMT-256ENST00000638063 1783 ntTSL 5 BASIC17.38■□□□□ 0.37
BRCA1P38398 NFATC2-205ENST00000609507 2662 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
BRCA1P38398 FAM234A-203ENST00000399932 3213 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
BRCA1P38398 SF3B4-201ENST00000271628 2085 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
BRCA1P38398 JKAMP-215ENST00000616435 2338 ntTSL 5 BASIC17.38■□□□□ 0.37
BRCA1P38398 INSIG1-201ENST00000340368 3010 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
BRCA1P38398 ILF2-201ENST00000361891 1659 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
BRCA1P38398 MARK2-209ENST00000509502 2862 ntAPPRIS ALT2 TSL 2 BASIC17.38■□□□□ 0.37
BRCA1P38398 PTPN5-201ENST00000358540 3135 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
BRCA1P38398 AC009242.1-201ENST00000634300 2706 ntTSL 5 BASIC17.38■□□□□ 0.37
BRCA1P38398 ZNF672-201ENST00000306562 2989 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
BRCA1P38398 CNKSR1-202ENST00000374253 2538 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
BRCA1P38398 FAM86C1-201ENST00000346333 2010 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
BRCA1P38398 MIR611-201ENST00000384869 67 ntBASIC17.37■□□□□ 0.37
BRCA1P38398 KRTAP2-3-201ENST00000391418 875 ntAPPRIS P1 BASIC17.37■□□□□ 0.37
BRCA1P38398 FAM197Y6-201ENST00000420524 766 ntBASIC17.37■□□□□ 0.37
BRCA1P38398 STAG3L3-203ENST00000436857 1033 ntTSL 2 BASIC17.37■□□□□ 0.37
BRCA1P38398 SOX2-OT-209ENST00000485035 561 ntTSL 4 BASIC17.37■□□□□ 0.37
BRCA1P38398 RPL18-205ENST00000549273 1036 ntTSL 2 BASIC17.37■□□□□ 0.37
BRCA1P38398 MT3-202ENST00000561640 514 ntTSL 3 BASIC17.37■□□□□ 0.37
BRCA1P38398 SOX2-OT-222ENST00000595084 853 ntTSL 5 BASIC17.37■□□□□ 0.37
BRCA1P38398 SOX2-OT-232ENST00000600386 792 ntTSL 5 BASIC17.37■□□□□ 0.37
BRCA1P38398 MIR6125-201ENST00000618986 96 ntBASIC17.37■□□□□ 0.37
BRCA1P38398 Metazoa_SRP.128-201ENST00000620543 314 ntBASIC17.37■□□□□ 0.37
BRCA1P38398 LINC01588-216ENST00000623502 975 ntTSL 2 BASIC17.37■□□□□ 0.37
BRCA1P38398 OR2T11-201ENST00000625105 1072 ntAPPRIS P1 BASIC17.37■□□□□ 0.37
BRCA1P38398 CFAP36-204ENST00000406691 1575 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
BRCA1P38398 PLD3-204ENST00000409281 2115 ntAPPRIS P1 TSL 2 BASIC17.37■□□□□ 0.37
BRCA1P38398 SLC25A45-201ENST00000294187 2196 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
BRCA1P38398 MDM1-205ENST00000430606 2170 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
BRCA1P38398 DIP2A-204ENST00000457905 3044 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
BRCA1P38398 PPTC7-201ENST00000354300 4996 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
BRCA1P38398 PTPRA-205ENST00000399903 3337 ntTSL 5 BASIC17.37■□□□□ 0.37
BRCA1P38398 POC1B-202ENST00000393179 3096 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
BRCA1P38398 NFATC1-218ENST00000592223 2531 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
BRCA1P38398 TARS2-203ENST00000369054 1998 ntTSL 2 BASIC17.37■□□□□ 0.37
BRCA1P38398 ADHFE1-203ENST00000396623 1990 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
BRCA1P38398 ANKRD40-201ENST00000285243 4184 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
BRCA1P38398 SKOR1-201ENST00000341418 3332 ntAPPRIS P2 TSL 1 (best) BASIC17.37■□□□□ 0.37
BRCA1P38398 ERICH1-206ENST00000522706 1551 ntAPPRIS ALT2 TSL 5 BASIC17.37■□□□□ 0.37
BRCA1P38398 CHAT-205ENST00000395562 2528 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
BRCA1P38398 CCDC144A-202ENST00000340621 2214 ntTSL 2 BASIC17.37■□□□□ 0.37
BRCA1P38398 CD79B-203ENST00000392795 1254 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
BRCA1P38398 FAM138B-202ENST00000446648 1130 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
BRCA1P38398 LINC01502-203ENST00000447907 880 ntTSL 3 BASIC17.37■□□□□ 0.37
BRCA1P38398 FAM138C-202ENST00000449442 1126 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
BRCA1P38398 AC011431.1-201ENST00000512971 230 ntBASIC17.37■□□□□ 0.37
BRCA1P38398 LINC00301-203ENST00000527161 749 ntTSL 2 BASIC17.37■□□□□ 0.37
BRCA1P38398 AC004923.3-201ENST00000527532 355 ntBASIC17.37■□□□□ 0.37
BRCA1P38398 AC140847.2-201ENST00000545923 501 ntTSL 3 BASIC17.37■□□□□ 0.37
BRCA1P38398 AC016582.2-202ENST00000587765 1094 ntBASIC17.37■□□□□ 0.37
BRCA1P38398 CCL3L3-203ENST00000619989 784 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
BRCA1P38398 AC073869.4-201ENST00000620841 800 ntBASIC17.37■□□□□ 0.37
BRCA1P38398 FAM138F-201ENST00000631376 1183 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
BRCA1P38398 SEC13-209ENST00000397117 1603 ntTSL 5 BASIC17.37■□□□□ 0.37
BRCA1P38398 TADA3-204ENST00000440161 1617 ntAPPRIS P1 TSL 2 BASIC17.37■□□□□ 0.37
BRCA1P38398 PRMT2-216ENST00000621201 1301 ntTSL 5 BASIC17.37■□□□□ 0.37
BRCA1P38398 C6orf106-202ENST00000374023 4418 ntAPPRIS P4 TSL 1 (best) BASIC17.37■□□□□ 0.37
BRCA1P38398 PPP2R5C-204ENST00000422945 4481 ntTSL 2 BASIC17.37■□□□□ 0.37
BRCA1P38398 MEF2A-204ENST00000557785 2854 ntAPPRIS ALT1 TSL 5 BASIC17.36■□□□□ 0.37
BRCA1P38398 DYNC1I1-212ENST00000630942 2249 ntTSL 2 BASIC17.36■□□□□ 0.37
BRCA1P38398 KRT71-201ENST00000267119 2265 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
BRCA1P38398 IL18BP-205ENST00000393705 1549 ntAPPRIS P2 TSL 1 (best) BASIC17.36■□□□□ 0.37
BRCA1P38398 LYAR-201ENST00000343470 1569 ntAPPRIS P2 TSL 1 (best) BASIC17.36■□□□□ 0.37
BRCA1P38398 ISLR-201ENST00000249842 2371 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
BRCA1P38398 DDOST-201ENST00000375048 2079 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
BRCA1P38398 SLC22A12-205ENST00000473690 2522 ntTSL 2 BASIC17.36■□□□□ 0.37
BRCA1P38398 SEC61B-201ENST00000223641 545 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
BRCA1P38398 CPSF4L-202ENST00000397671 1275 ntAPPRIS ALT2 TSL 5 BASIC17.36■□□□□ 0.37
BRCA1P38398 POLR3H-204ENST00000407461 802 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
BRCA1P38398 TTTY18-201ENST00000438677 221 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
BRCA1P38398 RN7SL523P-201ENST00000484401 298 ntBASIC17.36■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 58.5 ms