Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 AC096649.1-201ENST00000449168 497 ntTSL 3 BASIC12.98□□□□□ -0.33
COL8A1P27658 AL139010.1-202ENST00000452528 1041 ntTSL 2 BASIC12.98□□□□□ -0.33
COL8A1P27658 LINC01056-201ENST00000455711 1234 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
COL8A1P27658 LIMS3-205ENST00000487150 782 ntTSL 3 BASIC12.98□□□□□ -0.33
COL8A1P27658 RNF216P1-212ENST00000493407 659 ntTSL 3 BASIC12.98□□□□□ -0.33
COL8A1P27658 SNHG6-201ENST00000520348 648 ntTSL 2 BASIC12.98□□□□□ -0.33
COL8A1P27658 AC090572.2-201ENST00000520649 761 ntTSL 3 BASIC12.98□□□□□ -0.33
COL8A1P27658 AP003068.3-201ENST00000527789 175 ntTSL 2 BASIC12.98□□□□□ -0.33
COL8A1P27658 AC003982.2-201ENST00000536933 365 ntTSL 3 BASIC12.98□□□□□ -0.33
COL8A1P27658 LINC02281-201ENST00000549013 375 ntTSL 3 BASIC12.98□□□□□ -0.33
COL8A1P27658 SNRPF-204ENST00000552085 815 ntTSL 3 BASIC12.98□□□□□ -0.33
COL8A1P27658 AC136944.4-201ENST00000568893 660 ntTSL 4 BASIC12.98□□□□□ -0.33
COL8A1P27658 NRN1L-202ENST00000576147 681 ntAPPRIS ALT2 TSL 2 BASIC12.98□□□□□ -0.33
COL8A1P27658 SPINT2-204ENST00000587090 1246 ntAPPRIS ALT2 TSL 3 BASIC12.98□□□□□ -0.33
COL8A1P27658 AL157813.1-201ENST00000612996 587 ntBASIC12.98□□□□□ -0.33
COL8A1P27658 AC234782.2-201ENST00000614615 1240 ntTSL 2 BASIC12.98□□□□□ -0.33
COL8A1P27658 LRP10-203ENST00000546834 1780 ntAPPRIS ALT2 TSL 5 BASIC12.98□□□□□ -0.33
COL8A1P27658 TGFB1I1-214ENST00000567607 1770 ntAPPRIS P3 TSL 1 (best) BASIC12.98□□□□□ -0.33
COL8A1P27658 AK5-203ENST00000354567 3251 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
COL8A1P27658 PXN-201ENST00000228307 3785 ntAPPRIS P4 TSL 1 (best) BASIC12.98□□□□□ -0.33
COL8A1P27658 CCDC8-201ENST00000307522 3213 ntAPPRIS P1 BASIC12.98□□□□□ -0.33
COL8A1P27658 CPNE6-201ENST00000397016 2235 ntAPPRIS P1 TSL 2 BASIC12.98□□□□□ -0.33
COL8A1P27658 CPNE6-203ENST00000537691 2233 ntTSL 2 BASIC12.98□□□□□ -0.33
COL8A1P27658 ASAH1-254ENST00000637636 2218 ntAPPRIS ALT1 TSL 5 BASIC12.98□□□□□ -0.33
COL8A1P27658 WIZ-207ENST00000599910 4609 ntAPPRIS ALT2 TSL 5 BASIC12.98□□□□□ -0.33
COL8A1P27658 ZFAND5-204ENST00000376960 2686 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
COL8A1P27658 NEK7-202ENST00000367385 4149 ntAPPRIS P1 TSL 5 BASIC12.98□□□□□ -0.33
COL8A1P27658 NUCB1-202ENST00000407032 2158 ntAPPRIS P2 TSL 5 BASIC12.98□□□□□ -0.33
COL8A1P27658 NCOA6-206ENST00000612493 4082 ntAPPRIS ALT2 TSL 5 BASIC12.98□□□□□ -0.33
COL8A1P27658 OR2I1P-209ENST00000641730 5365 ntBASIC12.98□□□□□ -0.33
COL8A1P27658 TRPM2-AS-202ENST00000456880 2056 ntTSL 2 BASIC12.98□□□□□ -0.33
COL8A1P27658 RGL3-201ENST00000380456 2542 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
COL8A1P27658 AC105917.1-201ENST00000506637 2539 ntBASIC12.98□□□□□ -0.33
COL8A1P27658 NRP1-203ENST00000374821 1988 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
COL8A1P27658 CLCNKA-203ENST00000439316 1997 ntTSL 2 BASIC12.98□□□□□ -0.33
COL8A1P27658 CLMAT3-201ENST00000510576 1973 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
COL8A1P27658 TMPRSS13-203ENST00000524993 1950 ntAPPRIS P3 TSL 1 (best) BASIC12.98□□□□□ -0.33
COL8A1P27658 CSF3-201ENST00000225474 1509 ntAPPRIS P3 TSL 1 (best) BASIC12.98□□□□□ -0.33
COL8A1P27658 PLAGL1-211ENST00000625622 3216 ntAPPRIS P1 TSL 2 BASIC12.98□□□□□ -0.33
COL8A1P27658 CCNA2-202ENST00000618014 2797 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
COL8A1P27658 GOPC-203ENST00000535237 4460 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
COL8A1P27658 EPHA10-203ENST00000427468 3167 ntAPPRIS ALT2 TSL 5 BASIC12.97□□□□□ -0.33
COL8A1P27658 VPS16-203ENST00000380469 2318 ntTSL 2 BASIC12.97□□□□□ -0.33
COL8A1P27658 RAN-210ENST00000541630 1475 ntTSL 2 BASIC12.97□□□□□ -0.33
COL8A1P27658 CBFB-201ENST00000290858 3136 ntAPPRIS P3 TSL 1 (best) BASIC12.97□□□□□ -0.33
COL8A1P27658 F3-202ENST00000370207 1879 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
COL8A1P27658 TGFB1I1-203ENST00000394863 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC12.97□□□□□ -0.33
COL8A1P27658 SIGLEC6-205ENST00000425629 1852 ntAPPRIS P4 TSL 2 BASIC12.97□□□□□ -0.33
COL8A1P27658 UBQLN1-201ENST00000257468 2299 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
COL8A1P27658 SGCE-204ENST00000428696 1409 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
COL8A1P27658 PPP1R21-206ENST00000449090 3049 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
COL8A1P27658 PTPN9-206ENST00000618819 7813 ntAPPRIS P2 TSL 1 (best) BASIC12.97□□□□□ -0.33
COL8A1P27658 FGD5-206ENST00000543601 5768 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
COL8A1P27658 ZNF764-202ENST00000395091 2970 ntAPPRIS ALT1 TSL 2 BASIC12.97□□□□□ -0.33
COL8A1P27658 AC136759.1-201ENST00000534201 2163 ntTSL 2 BASIC12.97□□□□□ -0.33
COL8A1P27658 APAF1-201ENST00000333991 4539 ntTSL 5 BASIC12.97□□□□□ -0.33
COL8A1P27658 ARMC8-220ENST00000489213 1714 ntTSL 5 BASIC12.97□□□□□ -0.33
COL8A1P27658 SLC35E2B-203ENST00000611123 5948 ntAPPRIS P1 TSL 2 BASIC12.97□□□□□ -0.33
COL8A1P27658 PMS1-212ENST00000432292 3234 ntTSL 2 BASIC12.97□□□□□ -0.33
COL8A1P27658 NDRG2-209ENST00000397853 2079 ntAPPRIS P4 TSL 2 BASIC12.97□□□□□ -0.33
COL8A1P27658 UGDH-202ENST00000501493 2826 ntTSL 2 BASIC12.97□□□□□ -0.33
COL8A1P27658 COQ8B-202ENST00000324464 2443 ntAPPRIS P3 TSL 1 (best) BASIC12.97□□□□□ -0.33
COL8A1P27658 LINC00942-201ENST00000515614 2417 ntTSL 5 BASIC12.97□□□□□ -0.33
COL8A1P27658 CST1-201ENST00000304749 760 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
COL8A1P27658 S100A3-202ENST00000368713 856 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
COL8A1P27658 ETV2-201ENST00000379023 926 ntAPPRIS ALT2 TSL 1 (best) BASIC12.97□□□□□ -0.33
COL8A1P27658 CTHRC1-202ENST00000415886 571 ntTSL 2 BASIC12.97□□□□□ -0.33
COL8A1P27658 MIR4435-2HG-204ENST00000419736 777 ntTSL 3 BASIC12.97□□□□□ -0.33
COL8A1P27658 AL807761.2-201ENST00000422849 729 ntBASIC12.97□□□□□ -0.33
COL8A1P27658 AC012441.2-201ENST00000444843 739 ntBASIC12.97□□□□□ -0.33
COL8A1P27658 AC092800.1-201ENST00000449492 579 ntTSL 2 BASIC12.97□□□□□ -0.33
COL8A1P27658 MYLK-AS1-202ENST00000470449 760 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
COL8A1P27658 CCNC-217ENST00000523985 958 ntTSL 2 BASIC12.97□□□□□ -0.33
COL8A1P27658 ORAOV1-211ENST00000542341 775 ntTSL 2 BASIC12.97□□□□□ -0.33
COL8A1P27658 AC011603.1-201ENST00000553174 717 ntTSL 2 BASIC12.97□□□□□ -0.33
COL8A1P27658 AL132639.2-202ENST00000553520 467 ntTSL 2 BASIC12.97□□□□□ -0.33
COL8A1P27658 AC134312.2-201ENST00000563521 608 ntTSL 2 BASIC12.97□□□□□ -0.33
COL8A1P27658 AC010503.1-201ENST00000596027 520 ntTSL 5 BASIC12.97□□□□□ -0.33
COL8A1P27658 AC022001.2-201ENST00000607849 580 ntTSL 2 BASIC12.97□□□□□ -0.33
COL8A1P27658 C18orf21-207ENST00000610527 1059 ntTSL 2 BASIC12.97□□□□□ -0.33
COL8A1P27658 C18orf21-208ENST00000618334 856 ntTSL 3 BASIC12.97□□□□□ -0.33
COL8A1P27658 LINC01670-203ENST00000624859 977 ntTSL 3 BASIC12.97□□□□□ -0.33
COL8A1P27658 AC233280.19-201ENST00000633223 136 ntBASIC12.97□□□□□ -0.33
COL8A1P27658 AC002472.4-201ENST00000641915 272 ntBASIC12.97□□□□□ -0.33
COL8A1P27658 MAGEB2-201ENST00000378988 1610 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
COL8A1P27658 VWF-201ENST00000261405 8838 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
COL8A1P27658 AC092364.2-201ENST00000596710 2692 ntBASIC12.97□□□□□ -0.33
COL8A1P27658 APBB1-202ENST00000311051 2619 ntAPPRIS P3 TSL 1 (best) BASIC12.97□□□□□ -0.33
COL8A1P27658 FXYD5-201ENST00000342879 1580 ntAPPRIS P2 TSL 1 (best) BASIC12.97□□□□□ -0.33
COL8A1P27658 USP35-203ENST00000529308 4216 ntAPPRIS P1 TSL 5 BASIC12.97□□□□□ -0.33
COL8A1P27658 ZNF746-201ENST00000340622 3806 ntAPPRIS P3 TSL 1 (best) BASIC12.97□□□□□ -0.33
COL8A1P27658 TM9SF1-201ENST00000261789 2452 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
COL8A1P27658 ASB3-202ENST00000394717 1734 ntTSL 2 BASIC12.96□□□□□ -0.33
COL8A1P27658 POU5F1B-201ENST00000465342 5360 ntAPPRIS P1 TSL 3 BASIC12.96□□□□□ -0.33
COL8A1P27658 NSUN5-203ENST00000428206 2269 ntAPPRIS ALT2 TSL 2 BASIC12.96□□□□□ -0.33
COL8A1P27658 GPR176-205ENST00000561100 2816 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
COL8A1P27658 SLC29A2-205ENST00000544554 2505 ntAPPRIS P1 TSL 2 BASIC12.96□□□□□ -0.33
COL8A1P27658 AP001122.1-202ENST00000501648 1916 ntTSL 2 BASIC12.96□□□□□ -0.33
COL8A1P27658 CSF2RA-219ENST00000501036 1622 ntTSL 2 BASIC12.96□□□□□ -0.33
COL8A1P27658 AFAP1-201ENST00000358461 7516 ntAPPRIS P3 TSL 2 BASIC12.96□□□□□ -0.33
Retrieved 100 of 98,524 protein–RNA pairs in 80.2 ms