Protein–RNA interactions for Protein: P04004

VTN, Vitronectin, humanhuman

Predictions only

Length 478 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VTNP04004 REM1-201ENST00000201979 1665 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
VTNP04004 ADAMTSL1-204ENST00000380545 1562 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
VTNP04004 MVK-214ENST00000629016 1591 ntTSL 5 BASIC16.19■□□□□ 0.18
VTNP04004 BORCS5-201ENST00000298571 549 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
VTNP04004 AC091046.1-201ENST00000331871 207 ntBASIC16.19■□□□□ 0.18
VTNP04004 ALKBH2-201ENST00000343075 1030 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
VTNP04004 AC245369.1-201ENST00000390634 434 ntAPPRIS P1 BASIC16.19■□□□□ 0.18
VTNP04004 AC078875.1-201ENST00000431907 724 ntBASIC16.19■□□□□ 0.18
VTNP04004 PTPA-215ENST00000432124 567 ntTSL 4 BASIC16.19■□□□□ 0.18
VTNP04004 DGUOK-AS1-202ENST00000439192 563 ntTSL 2 BASIC16.19■□□□□ 0.18
VTNP04004 BMS1P17-203ENST00000444357 552 ntTSL 4 BASIC16.19■□□□□ 0.18
VTNP04004 HDAC2-AS2-213ENST00000520891 603 ntTSL 4 BASIC16.19■□□□□ 0.18
VTNP04004 AC134698.3-201ENST00000523880 214 ntBASIC16.19■□□□□ 0.18
VTNP04004 AC090857.1-201ENST00000527400 390 ntBASIC16.19■□□□□ 0.18
VTNP04004 AL132639.2-202ENST00000553520 467 ntTSL 2 BASIC16.19■□□□□ 0.18
VTNP04004 FOS-206ENST00000555347 1280 ntTSL 2 BASIC16.19■□□□□ 0.18
VTNP04004 RBM8B-201ENST00000555532 525 ntBASIC16.19■□□□□ 0.18
VTNP04004 GFER-204ENST00000567719 483 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
VTNP04004 PAM16-211ENST00000575848 518 ntTSL 3 BASIC16.19■□□□□ 0.18
VTNP04004 PAM16-214ENST00000576217 493 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
VTNP04004 BMS1P22-203ENST00000609679 552 ntTSL 4 BASIC16.19■□□□□ 0.18
VTNP04004 POLR3D-202ENST00000397802 5494 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
VTNP04004 NFKB2-203ENST00000369966 3101 ntAPPRIS P4 TSL 1 (best) BASIC16.19■□□□□ 0.18
VTNP04004 CARD11-203ENST00000396946 4366 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
VTNP04004 EIF4G1-206ENST00000392537 5229 ntTSL 2 BASIC16.19■□□□□ 0.18
VTNP04004 RTKN-202ENST00000272430 2142 ntAPPRIS ALT1 TSL 1 (best) BASIC16.19■□□□□ 0.18
VTNP04004 BCAR3-210ENST00000539242 2114 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
VTNP04004 LEF1-202ENST00000379951 3477 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
VTNP04004 C11orf80-201ENST00000360962 1807 ntAPPRIS ALT2 TSL 5 BASIC16.19■□□□□ 0.18
VTNP04004 TLL1-206ENST00000513213 1829 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
VTNP04004 PXN-207ENST00000536957 4112 ntAPPRIS ALT2 TSL 2 BASIC16.19■□□□□ 0.18
VTNP04004 EEF1AKMT3-201ENST00000300209 2563 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
VTNP04004 PITPNM2-208ENST00000542749 6660 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
VTNP04004 CHRD-201ENST00000204604 3521 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
VTNP04004 CCP110-201ENST00000381396 5446 ntAPPRIS ALT1 TSL 1 (best) BASIC16.19■□□□□ 0.18
VTNP04004 AKAP1-201ENST00000314126 2380 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
VTNP04004 UPK3B-202ENST00000334348 2373 ntAPPRIS ALT2 TSL 2 BASIC16.19■□□□□ 0.18
VTNP04004 WSCD1-210ENST00000574946 5884 ntAPPRIS P1 TSL 2 BASIC16.19■□□□□ 0.18
VTNP04004 UBXN11-207ENST00000374223 1312 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
VTNP04004 ZFPM2-206ENST00000520492 3960 ntTSL 2 BASIC16.19■□□□□ 0.18
VTNP04004 CDKN2B-AS1-208ENST00000580576 2175 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
VTNP04004 RASA1-201ENST00000274376 3752 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
VTNP04004 MYB-201ENST00000316528 3571 ntTSL 5 BASIC16.18■□□□□ 0.18
VTNP04004 MYB-241ENST00000616088 3573 ntTSL 5 BASIC16.18■□□□□ 0.18
VTNP04004 WDTC1-202ENST00000361771 4275 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
VTNP04004 CYB561D1-205ENST00000430195 5077 ntTSL 2 BASIC16.18■□□□□ 0.18
VTNP04004 TNXB-209ENST00000613214 6842 ntTSL 5 BASIC16.18■□□□□ 0.18
VTNP04004 TMEM230-201ENST00000202834 1472 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
VTNP04004 RAN-210ENST00000541630 1475 ntTSL 2 BASIC16.18■□□□□ 0.18
VTNP04004 ZNF804B-201ENST00000333190 4659 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
VTNP04004 KLF5-201ENST00000377687 3566 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
VTNP04004 ID2-203ENST00000396290 1362 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
VTNP04004 RANBP1-208ENST00000430524 1389 ntTSL 3 BASIC16.18■□□□□ 0.18
VTNP04004 MAGI1-216ENST00000497477 3555 ntTSL 5 BASIC16.18■□□□□ 0.18
VTNP04004 LINC02405-201ENST00000512624 1361 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
VTNP04004 SPO11-203ENST00000371263 1834 ntAPPRIS P4 TSL 1 (best) BASIC16.18■□□□□ 0.18
VTNP04004 ZNF134-201ENST00000396161 4914 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
VTNP04004 SEPT9-228ENST00000590294 2816 ntAPPRIS ALT2 TSL 5 BASIC16.18■□□□□ 0.18
VTNP04004 MAP2K3-201ENST00000316920 1246 ntTSL 5 BASIC16.18■□□□□ 0.18
VTNP04004 C6orf136-202ENST00000376471 614 ntTSL 3 BASIC16.18■□□□□ 0.18
VTNP04004 HLA-DQB2-229ENST00000411527 1059 ntBASIC16.18■□□□□ 0.18
VTNP04004 AC079807.2-203ENST00000417692 656 ntTSL 2 BASIC16.18■□□□□ 0.18
VTNP04004 BX324167.1-201ENST00000451118 805 ntTSL 5 BASIC16.18■□□□□ 0.18
VTNP04004 SNHG14-209ENST00000456576 544 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
VTNP04004 AC005234.1-201ENST00000457851 434 ntTSL 3 BASIC16.18■□□□□ 0.18
VTNP04004 SUPT4H1P2-201ENST00000501248 353 ntBASIC16.18■□□□□ 0.18
VTNP04004 TGIF1-218ENST00000551402 1089 ntTSL 2 BASIC16.18■□□□□ 0.18
VTNP04004 AC103988.2-201ENST00000561804 725 ntBASIC16.18■□□□□ 0.18
VTNP04004 AC009065.3-201ENST00000562027 627 ntTSL 5 BASIC16.18■□□□□ 0.18
VTNP04004 AC008133.1-201ENST00000584688 557 ntTSL 4 BASIC16.18■□□□□ 0.18
VTNP04004 AL133499.1-201ENST00000596207 608 ntBASIC16.18■□□□□ 0.18
VTNP04004 HOXA3-202ENST00000396352 3263 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
VTNP04004 CDCP2-201ENST00000371330 2723 ntAPPRIS P2 TSL 2 BASIC16.18■□□□□ 0.18
VTNP04004 CECR7-202ENST00000441006 2726 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
VTNP04004 BUD13-201ENST00000260210 2196 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
VTNP04004 PCDHGA12-202ENST00000613314 2634 ntAPPRIS ALT2 BASIC16.18■□□□□ 0.18
VTNP04004 CHIA-204ENST00000369740 1625 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
VTNP04004 MAGEB2-201ENST00000378988 1610 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
VTNP04004 NTM-205ENST00000425719 1607 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
VTNP04004 SLC22A7-203ENST00000372589 2549 ntAPPRIS ALT2 TSL 2 BASIC16.18■□□□□ 0.18
VTNP04004 ZNF586-202ENST00000396150 1977 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
VTNP04004 CPSF7-202ENST00000394888 3650 ntAPPRIS P4 TSL 2 BASIC16.18■□□□□ 0.18
VTNP04004 FCHO1-206ENST00000594202 3214 ntTSL 5 BASIC16.18■□□□□ 0.18
VTNP04004 TPD52L2-205ENST00000352482 2339 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
VTNP04004 TPD52L2-210ENST00000615907 2310 ntTSL 4 BASIC16.18■□□□□ 0.18
VTNP04004 AL031282.2-201ENST00000598846 5079 ntTSL 2 BASIC16.18■□□□□ 0.18
VTNP04004 DUS4L-201ENST00000265720 2220 ntAPPRIS P1 TSL 2 BASIC16.18■□□□□ 0.18
VTNP04004 SLC32A1-201ENST00000217420 2574 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
VTNP04004 MBD1-217ENST00000588937 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
VTNP04004 TMEM106A-202ENST00000541594 1330 ntTSL 2 BASIC16.18■□□□□ 0.18
VTNP04004 TEAD3-202ENST00000402886 2729 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
VTNP04004 ITSN1-205ENST00000381291 5437 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
VTNP04004 SLC35G2-201ENST00000393079 1577 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
VTNP04004 AL590440.2-201ENST00000641973 1595 ntBASIC16.17■□□□□ 0.18
VTNP04004 SLC41A3-211ENST00000508835 1480 ntTSL 2 BASIC16.17■□□□□ 0.18
VTNP04004 AC018442.1-201ENST00000421439 2061 ntBASIC16.17■□□□□ 0.18
VTNP04004 KRAS-202ENST00000311936 5765 ntAPPRIS ALT1 TSL 1 (best) BASIC16.17■□□□□ 0.18
VTNP04004 SLC12A9-201ENST00000354161 3273 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
VTNP04004 MTCL1-203ENST00000400050 6042 ntAPPRIS P2 TSL 5 BASIC16.17■□□□□ 0.18
VTNP04004 BCAS4-201ENST00000358791 1378 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 43.8 ms