Protein–RNA interactions for Protein: O95243

MBD4, Methyl-CpG-binding domain protein 4, humanhuman

Predictions only

Length 580 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MBD4O95243 HIST1H2AG-201ENST00000359193 2250 ntAPPRIS P1 BASIC17.64■□□□□ 0.41
MBD4O95243 ARIH2-205ENST00000449376 2278 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
MBD4O95243 SCML4-201ENST00000369020 1491 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.41
MBD4O95243 ARRB2-204ENST00000412477 1779 ntTSL 2 BASIC17.64■□□□□ 0.41
MBD4O95243 BDP1-202ENST00000380675 2861 ntAPPRIS ALT2 TSL 5 BASIC17.64■□□□□ 0.41
MBD4O95243 TMEM9-204ENST00000367334 1529 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.41
MBD4O95243 XPO1-201ENST00000401558 4915 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
MBD4O95243 SLC52A3-205ENST00000632431 2694 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
MBD4O95243 TPRKB-202ENST00000318190 819 ntTSL 5 BASIC17.64■□□□□ 0.41
MBD4O95243 VSIG2-201ENST00000326621 1148 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
MBD4O95243 ZNF324B-201ENST00000336614 2996 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
MBD4O95243 RPL35-201ENST00000348462 455 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
MBD4O95243 DPM3-202ENST00000368399 517 ntBASIC17.64■□□□□ 0.41
MBD4O95243 CTNNBIP1-202ENST00000377258 852 ntAPPRIS P1 TSL 3 BASIC17.64■□□□□ 0.41
MBD4O95243 ATP6V1E1-202ENST00000399796 1208 ntTSL 2 BASIC17.64■□□□□ 0.41
MBD4O95243 LINC00278-201ENST00000425031 528 ntTSL 2 BASIC17.64■□□□□ 0.41
MBD4O95243 AL139420.1-201ENST00000439394 653 ntTSL 3 BASIC17.64■□□□□ 0.41
MBD4O95243 SNHG14-209ENST00000456576 544 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
MBD4O95243 AC018685.1-201ENST00000457813 368 ntTSL 3 BASIC17.64■□□□□ 0.41
MBD4O95243 PGAP2-214ENST00000465307 1100 ntTSL 2 BASIC17.64■□□□□ 0.41
MBD4O95243 FAM86B1-218ENST00000534520 808 ntTSL 2 BASIC17.64■□□□□ 0.41
MBD4O95243 MRPL51-202ENST00000537701 601 ntTSL 2 BASIC17.64■□□□□ 0.41
MBD4O95243 CCDC86-203ENST00000545580 697 ntAPPRIS ALT2 TSL 3 BASIC17.64■□□□□ 0.41
MBD4O95243 NFATC4-211ENST00000554344 2955 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
MBD4O95243 NAT9-222ENST00000583476 583 ntTSL 3 BASIC17.64■□□□□ 0.41
MBD4O95243 FBXL12-204ENST00000586469 544 ntTSL 2 BASIC17.64■□□□□ 0.41
MBD4O95243 RPL35-206ENST00000629845 340 ntTSL 5 BASIC17.64■□□□□ 0.41
MBD4O95243 AC004923.1-202ENST00000642106 209 ntBASIC17.64■□□□□ 0.41
MBD4O95243 LINC02228-204ENST00000642115 2962 ntBASIC17.64■□□□□ 0.41
MBD4O95243 STRA6-205ENST00000432245 1889 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
MBD4O95243 ZNF79-202ENST00000543471 2194 ntTSL 2 BASIC17.64■□□□□ 0.41
MBD4O95243 ZNF79-203ENST00000612342 2192 ntTSL 2 BASIC17.64■□□□□ 0.41
MBD4O95243 NR1H3-211ENST00000441012 1637 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
MBD4O95243 HHEX-202ENST00000472590 1605 ntTSL 2 BASIC17.64■□□□□ 0.41
MBD4O95243 SLC35C2-204ENST00000372230 2246 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
MBD4O95243 SYNRG-222ENST00000614941 3406 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
MBD4O95243 AC092718.8-201ENST00000640345 2892 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.41
MBD4O95243 CDR2L-201ENST00000337231 3536 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
MBD4O95243 MARK3-202ENST00000303622 3283 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.41
MBD4O95243 ANKMY1-210ENST00000406958 2396 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
MBD4O95243 TMC6-216ENST00000590602 5268 ntAPPRIS P1 TSL 2 BASIC17.63■□□□□ 0.41
MBD4O95243 RAF1-205ENST00000442415 3085 ntTSL 5 BASIC17.63■□□□□ 0.41
MBD4O95243 DZIP1-204ENST00000376829 3738 ntAPPRIS P4 TSL 1 (best) BASIC17.63■□□□□ 0.41
MBD4O95243 FLJ16779-201ENST00000612722 7638 ntBASIC17.63■□□□□ 0.41
MBD4O95243 ABI3-201ENST00000225941 2109 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
MBD4O95243 ZIM2-AS1-201ENST00000595954 2129 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
MBD4O95243 EHF-212ENST00000533754 1501 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
MBD4O95243 POMK-201ENST00000331373 1865 ntAPPRIS P1 TSL 2 BASIC17.63■□□□□ 0.41
MBD4O95243 POLR1E-202ENST00000377798 1868 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
MBD4O95243 PPP1R26-204ENST00000604351 4640 ntAPPRIS P1 TSL 3 BASIC17.63■□□□□ 0.41
MBD4O95243 BRAT1-201ENST00000340611 2915 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
MBD4O95243 STRA6-207ENST00000535552 2631 ntTSL 2 BASIC17.63■□□□□ 0.41
MBD4O95243 AC023824.1-201ENST00000562945 2975 ntBASIC17.63■□□□□ 0.41
MBD4O95243 ILF2-205ENST00000615950 1906 ntTSL 2 BASIC17.63■□□□□ 0.41
MBD4O95243 OGFOD2-202ENST00000397389 2308 ntTSL 2 BASIC17.63■□□□□ 0.41
MBD4O95243 MAGEB2-201ENST00000378988 1610 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
MBD4O95243 PQBP1-201ENST00000218224 1113 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
MBD4O95243 PQBP1-202ENST00000247140 664 ntTSL 3 BASIC17.63■□□□□ 0.41
MBD4O95243 HIST1H1B-201ENST00000331442 681 ntAPPRIS P1 BASIC17.63■□□□□ 0.41
MBD4O95243 MRPL55-214ENST00000366741 603 ntAPPRIS P1 TSL 2 BASIC17.63■□□□□ 0.41
MBD4O95243 MRPL55-218ENST00000366747 603 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
MBD4O95243 C1orf53-201ENST00000367393 588 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
MBD4O95243 WDR3-202ENST00000369441 1035 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
MBD4O95243 PQBP1-203ENST00000376563 1056 ntAPPRIS P1 TSL 2 BASIC17.63■□□□□ 0.41
MBD4O95243 PQBP1-204ENST00000376566 760 ntTSL 3 BASIC17.63■□□□□ 0.41
MBD4O95243 PQBP1-205ENST00000396763 965 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
MBD4O95243 HNRNPA1P27-201ENST00000412087 955 ntBASIC17.63■□□□□ 0.41
MBD4O95243 PTPA-215ENST00000432124 567 ntTSL 4 BASIC17.63■□□□□ 0.41
MBD4O95243 AL355994.3-201ENST00000437156 466 ntTSL 2 BASIC17.63■□□□□ 0.41
MBD4O95243 FAM58BP-201ENST00000439056 645 ntBASIC17.63■□□□□ 0.41
MBD4O95243 VDAC1P1-201ENST00000439229 848 ntBASIC17.63■□□□□ 0.41
MBD4O95243 AC012441.2-201ENST00000444843 739 ntBASIC17.63■□□□□ 0.41
MBD4O95243 PQBP1-207ENST00000447146 1020 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
MBD4O95243 AC006003.1-201ENST00000448541 613 ntTSL 4 BASIC17.63■□□□□ 0.41
MBD4O95243 BTNL8-205ENST00000505126 1294 ntTSL 2 BASIC17.63■□□□□ 0.41
MBD4O95243 AC005740.2-201ENST00000511085 419 ntBASIC17.63■□□□□ 0.41
MBD4O95243 ZNF385A-213ENST00000551771 1111 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
MBD4O95243 AC020914.3-201ENST00000594712 304 ntBASIC17.63■□□□□ 0.41
MBD4O95243 Metazoa_SRP.166-201ENST00000612530 253 ntBASIC17.63■□□□□ 0.41
MBD4O95243 AC068587.8-201ENST00000641239 219 ntBASIC17.63■□□□□ 0.41
MBD4O95243 SLC35E2-202ENST00000355439 2078 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
MBD4O95243 MYOC-201ENST00000037502 2095 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
MBD4O95243 INSC-208ENST00000530161 1702 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
MBD4O95243 GNE-202ENST00000396594 5298 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
MBD4O95243 DNAI1-209ENST00000614641 2598 ntAPPRIS ALT2 TSL 5 BASIC17.63■□□□□ 0.41
MBD4O95243 SLC25A34-201ENST00000294454 2986 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
MBD4O95243 CAP1-205ENST00000372802 2964 ntAPPRIS ALT1 TSL 5 BASIC17.63■□□□□ 0.41
MBD4O95243 PHF3-209ENST00000509330 2969 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
MBD4O95243 SAFB2-201ENST00000252542 3371 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
MBD4O95243 PAFAH1B1-202ENST00000397195 5497 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
MBD4O95243 CHAT-212ENST00000640822 1412 ntTSL 5 BASIC17.63■□□□□ 0.41
MBD4O95243 SLC6A20-204ENST00000456124 2662 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
MBD4O95243 PIANP-202ENST00000534837 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
MBD4O95243 LINC02076-201ENST00000577684 1871 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
MBD4O95243 SLC25A19-202ENST00000375261 1486 ntTSL 5 BASIC17.63■□□□□ 0.41
MBD4O95243 DTX3-202ENST00000548198 3199 ntAPPRIS P3 TSL 2 BASIC17.63■□□□□ 0.41
MBD4O95243 NPAS2-201ENST00000335681 4007 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
MBD4O95243 TMBIM1-201ENST00000258412 2371 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
MBD4O95243 DDX1-202ENST00000381341 2817 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
MBD4O95243 TOMM34-201ENST00000372813 2062 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 54.2 ms