Protein–RNA interactions for Protein: O75161

NPHP4, Nephrocystin-4, humanhuman

Predicted RBP Predictions only

Length 1,426 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4O75161 DCBLD2-201ENST00000326840 6122 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
NPHP4O75161 MAGEA2-203ENST00000611557 2024 ntAPPRIS P1 TSL 5 BASIC20.26■□□□□ 0.83
NPHP4O75161 CLPTM1-202ENST00000541297 2732 ntTSL 2 BASIC20.26■□□□□ 0.83
NPHP4O75161 SMARCC1-201ENST00000254480 6375 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
NPHP4O75161 RPL3P2-204ENST00000413027 1203 ntBASIC20.26■□□□□ 0.83
NPHP4O75161 HFE-209ENST00000461397 1045 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
NPHP4O75161 AC099548.2-201ENST00000491047 571 ntTSL 4 BASIC20.26■□□□□ 0.83
NPHP4O75161 AC004801.1-201ENST00000549557 360 ntBASIC20.26■□□□□ 0.83
NPHP4O75161 AC079414.2-201ENST00000567157 1104 ntBASIC20.26■□□□□ 0.83
NPHP4O75161 AC016586.1-201ENST00000600056 684 ntTSL 3 BASIC20.26■□□□□ 0.83
NPHP4O75161 URAHP-205ENST00000610227 398 ntBASIC20.26■□□□□ 0.83
NPHP4O75161 Metazoa_SRP.144-201ENST00000617007 311 ntBASIC20.26■□□□□ 0.83
NPHP4O75161 AL357143.1-203ENST00000639750 881 ntBASIC20.26■□□□□ 0.83
NPHP4O75161 PNPLA5-204ENST00000593866 2197 ntTSL 2 BASIC20.26■□□□□ 0.83
NPHP4O75161 KYAT1-201ENST00000302586 1903 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
NPHP4O75161 ASL-201ENST00000304874 2143 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
NPHP4O75161 AL358216.1-201ENST00000451601 1657 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
NPHP4O75161 RILPL2-201ENST00000280571 6141 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
NPHP4O75161 RNF34-211ENST00000613529 1449 ntTSL 2 BASIC20.25■□□□□ 0.83
NPHP4O75161 CCT6A-201ENST00000275603 2719 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
NPHP4O75161 AC004834.1-201ENST00000640784 2412 ntTSL 3 BASIC20.25■□□□□ 0.83
NPHP4O75161 C18orf63-201ENST00000579455 5127 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
NPHP4O75161 OXSR1-201ENST00000311806 4553 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
NPHP4O75161 AC010424.3-201ENST00000635510 1745 ntTSL 5 BASIC20.25■□□□□ 0.83
NPHP4O75161 ACSM2B-207ENST00000565232 2322 ntAPPRIS P1 TSL 2 BASIC20.25■□□□□ 0.83
NPHP4O75161 CHAT-201ENST00000337653 2458 ntAPPRIS P4 TSL 1 (best) BASIC20.25■□□□□ 0.83
NPHP4O75161 INTS11-204ENST00000421495 1868 ntTSL 2 BASIC20.25■□□□□ 0.83
NPHP4O75161 KRTAP6-1-201ENST00000329122 500 ntAPPRIS P1 BASIC20.25■□□□□ 0.83
NPHP4O75161 KRTAP4-12-201ENST00000394014 1077 ntAPPRIS P1 BASIC20.25■□□□□ 0.83
NPHP4O75161 LINC01885-201ENST00000414300 609 ntTSL 4 BASIC20.25■□□□□ 0.83
NPHP4O75161 TMEM222-203ENST00000464813 1071 ntTSL 2 BASIC20.25■□□□□ 0.83
NPHP4O75161 C11orf58-207ENST00000525684 575 ntTSL 2 BASIC20.25■□□□□ 0.83
NPHP4O75161 C11orf58-209ENST00000528634 776 ntTSL 5 BASIC20.25■□□□□ 0.83
NPHP4O75161 GABARAPL1-213ENST00000544284 531 ntTSL 3 BASIC20.25■□□□□ 0.83
NPHP4O75161 BATF-202ENST00000555504 361 ntTSL 2 BASIC20.25■□□□□ 0.83
NPHP4O75161 AC091304.3-201ENST00000566500 716 ntBASIC20.25■□□□□ 0.83
NPHP4O75161 RPL18A-203ENST00000599870 1084 ntTSL 2 BASIC20.25■□□□□ 0.83
NPHP4O75161 Metazoa_SRP.83-201ENST00000611762 320 ntBASIC20.25■□□□□ 0.83
NPHP4O75161 Metazoa_SRP.37-201ENST00000617743 320 ntBASIC20.25■□□□□ 0.83
NPHP4O75161 ESR1-214ENST00000638569 132 ntTSL 5 BASIC20.25■□□□□ 0.83
NPHP4O75161 SPAG6-203ENST00000376624 2605 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
NPHP4O75161 EWSR1-222ENST00000629659 2446 ntTSL 5 BASIC20.25■□□□□ 0.83
NPHP4O75161 BCAT2-201ENST00000316273 1552 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
NPHP4O75161 EMILIN3-201ENST00000332312 3796 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
NPHP4O75161 DUS2-201ENST00000358896 1933 ntAPPRIS P1 TSL 2 BASIC20.24■□□□□ 0.83
NPHP4O75161 GDI2-203ENST00000380191 2412 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
NPHP4O75161 DYNC1I1-212ENST00000630942 2249 ntTSL 2 BASIC20.24■□□□□ 0.83
NPHP4O75161 FZR1-203ENST00000441788 5212 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
NPHP4O75161 LRRFIP2-205ENST00000421276 2522 ntTSL 2 BASIC20.24■□□□□ 0.83
NPHP4O75161 CACNB3-203ENST00000540990 1814 ntTSL 2 BASIC20.24■□□□□ 0.83
NPHP4O75161 NR1H3-203ENST00000405853 1480 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
NPHP4O75161 PIGW-204ENST00000614443 2312 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
NPHP4O75161 ORC6-201ENST00000219097 1628 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
NPHP4O75161 GPX3-201ENST00000388825 1636 ntAPPRIS P2 TSL 1 (best) BASIC20.24■□□□□ 0.83
NPHP4O75161 C11orf53-201ENST00000280325 1208 ntAPPRIS P1 TSL 5 BASIC20.24■□□□□ 0.83
NPHP4O75161 OPN1MW2-201ENST00000369929 1261 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
NPHP4O75161 STK24P1-201ENST00000455035 1291 ntBASIC20.24■□□□□ 0.83
NPHP4O75161 RPAIN-205ENST00000536255 1057 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
NPHP4O75161 SPAG5-AS1-204ENST00000556050 871 ntTSL 2 BASIC20.24■□□□□ 0.83
NPHP4O75161 APOPT1-215ENST00000556253 783 ntTSL 3 BASIC20.24■□□□□ 0.83
NPHP4O75161 AC005777.1-201ENST00000588332 187 ntBASIC20.24■□□□□ 0.83
NPHP4O75161 AC026336.4-201ENST00000624565 1050 ntBASIC20.24■□□□□ 0.83
NPHP4O75161 GOLGA3-203ENST00000456883 5496 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
NPHP4O75161 SH3KBP1-201ENST00000379697 1944 ntTSL 5 BASIC20.24■□□□□ 0.83
NPHP4O75161 PEX10-201ENST00000288774 2871 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
NPHP4O75161 CLIC5-202ENST00000339561 2390 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
NPHP4O75161 PMS1-206ENST00000418224 3018 ntTSL 5 BASIC20.24■□□□□ 0.83
NPHP4O75161 KRT76-201ENST00000332411 2529 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
NPHP4O75161 HLF-202ENST00000430986 1385 ntTSL 2 BASIC20.24■□□□□ 0.83
NPHP4O75161 CADPS-201ENST00000283269 4591 ntAPPRIS P4 TSL 1 (best) BASIC20.24■□□□□ 0.83
NPHP4O75161 GHDC-202ENST00000414034 2496 ntTSL 2 BASIC20.23■□□□□ 0.83
NPHP4O75161 FOLH1-201ENST00000256999 2635 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
NPHP4O75161 TMEM189-UBE2V1-201ENST00000341698 2757 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
NPHP4O75161 SPAG1-201ENST00000251809 3748 ntAPPRIS P1 TSL 5 BASIC20.23■□□□□ 0.83
NPHP4O75161 AC007952.5-201ENST00000572818 1486 ntBASIC20.23■□□□□ 0.83
NPHP4O75161 CD68-202ENST00000380498 1771 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
NPHP4O75161 PRMT2-207ENST00000440086 1932 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
NPHP4O75161 FAU-201ENST00000279259 461 ntTSL 2 BASIC20.23■□□□□ 0.83
NPHP4O75161 DOK4-201ENST00000340099 2772 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
NPHP4O75161 SIRPB3P-201ENST00000340424 1216 ntBASIC20.23■□□□□ 0.83
NPHP4O75161 TRBV7-3-201ENST00000390361 397 ntAPPRIS P1 BASIC20.23■□□□□ 0.83
NPHP4O75161 AC073210.1-201ENST00000414799 232 ntBASIC20.23■□□□□ 0.83
NPHP4O75161 FAM197Y6-201ENST00000420524 766 ntBASIC20.23■□□□□ 0.83
NPHP4O75161 PSMB8-AS1-204ENST00000429600 996 ntTSL 2 BASIC20.23■□□□□ 0.83
NPHP4O75161 AC113133.1-201ENST00000522388 1088 ntTSL 2 BASIC20.23■□□□□ 0.83
NPHP4O75161 CRYM-202ENST00000543948 1400 ntAPPRIS P1 TSL 5 BASIC20.23■□□□□ 0.83
NPHP4O75161 CSTP2-201ENST00000610599 398 ntBASIC20.23■□□□□ 0.83
NPHP4O75161 PDCD6-213ENST00000618970 931 ntTSL 3 BASIC20.23■□□□□ 0.83
NPHP4O75161 AC117503.4-201ENST00000623229 1418 ntBASIC20.23■□□□□ 0.83
NPHP4O75161 MTUS1-229ENST00000634613 1193 ntTSL 5 BASIC20.23■□□□□ 0.83
NPHP4O75161 FLAD1-205ENST00000368431 1803 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
NPHP4O75161 LCORL-203ENST00000382226 5009 ntAPPRIS P2 TSL 5 BASIC20.23■□□□□ 0.83
NPHP4O75161 GSAP-201ENST00000257626 3251 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
NPHP4O75161 AL021453.1-201ENST00000333487 2989 ntTSL 2 BASIC20.23■□□□□ 0.83
NPHP4O75161 DNAAF1-201ENST00000378553 2379 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
NPHP4O75161 PCDH8P1-201ENST00000428983 2773 ntBASIC20.23■□□□□ 0.83
NPHP4O75161 MAN1C1-201ENST00000263979 2627 ntTSL 5 BASIC20.23■□□□□ 0.83
NPHP4O75161 KCNJ18-201ENST00000567955 2196 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
NPHP4O75161 PHGDH-223ENST00000641597 2585 ntAPPRIS P1 BASIC20.22■□□□□ 0.83
NPHP4O75161 PCDHA14-201ENST00000506751 2298 ntBASIC20.22■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 51.6 ms