Protein–RNA interactions for Protein: O75150

RNF40, E3 ubiquitin-protein ligase BRE1B, humanhuman

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40O75150 RPL13P2-201ENST00000440687 659 ntBASIC16.19■□□□□ 0.18
RNF40O75150 LINC01939-201ENST00000445279 694 ntTSL 5 BASIC16.19■□□□□ 0.18
RNF40O75150 PRSS42-202ENST00000447340 1280 ntTSL 2 BASIC16.19■□□□□ 0.18
RNF40O75150 SLC25A47P1-201ENST00000531577 414 ntBASIC16.19■□□□□ 0.18
RNF40O75150 NOP2-211ENST00000540228 668 ntTSL 2 BASIC16.19■□□□□ 0.18
RNF40O75150 PXN-AS1-204ENST00000542265 854 ntTSL 2 BASIC16.19■□□□□ 0.18
RNF40O75150 AL139317.3-201ENST00000555969 898 ntTSL 2 BASIC16.19■□□□□ 0.18
RNF40O75150 RORA-AS1-205ENST00000559824 761 ntTSL 3 BASIC16.19■□□□□ 0.18
RNF40O75150 GCHFR-206ENST00000561160 572 ntTSL 3 BASIC16.19■□□□□ 0.18
RNF40O75150 OIP5-AS1-209ENST00000561226 775 ntTSL 3 BASIC16.19■□□□□ 0.18
RNF40O75150 AC243562.2-201ENST00000561247 970 ntBASIC16.19■□□□□ 0.18
RNF40O75150 AC012615.4-201ENST00000586694 607 ntTSL 4 BASIC16.19■□□□□ 0.18
RNF40O75150 ZSCAN30-208ENST00000592278 731 ntTSL 4 BASIC16.19■□□□□ 0.18
RNF40O75150 AC073263.1-201ENST00000616370 494 ntTSL 3 BASIC16.19■□□□□ 0.18
RNF40O75150 PNPLA3-201ENST00000216180 2805 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
RNF40O75150 SH3BP5L-201ENST00000366472 3861 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
RNF40O75150 LINC01138-206ENST00000622328 2212 ntTSL 2 BASIC16.19■□□□□ 0.18
RNF40O75150 MLXIPL-205ENST00000429400 3173 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
RNF40O75150 SPTLC2-201ENST00000216484 8170 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
RNF40O75150 FLII-201ENST00000327031 4338 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
RNF40O75150 DMTN-214ENST00000519907 2658 ntTSL 5 BASIC16.19■□□□□ 0.18
RNF40O75150 ADI1-201ENST00000327435 2391 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
RNF40O75150 KRT8P37-201ENST00000451609 1420 ntBASIC16.19■□□□□ 0.18
RNF40O75150 FAM107A-206ENST00000474531 2271 ntTSL 2 BASIC16.19■□□□□ 0.18
RNF40O75150 PLAGL1-201ENST00000354765 3663 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
RNF40O75150 A1CF-202ENST00000373993 1997 ntAPPRIS P4 TSL 1 (best) BASIC16.18■□□□□ 0.18
RNF40O75150 STRA6-205ENST00000432245 1889 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
RNF40O75150 CD6-201ENST00000313421 3252 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
RNF40O75150 DUSP13-203ENST00000372702 1778 ntAPPRIS ALT1 TSL 1 (best) BASIC16.18■□□□□ 0.18
RNF40O75150 PITX2-204ENST00000394595 1693 ntTSL 5 BASIC16.18■□□□□ 0.18
RNF40O75150 NTN4-201ENST00000343702 3615 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
RNF40O75150 FGFR1-202ENST00000335922 4157 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
RNF40O75150 TCAF1P1-201ENST00000414990 2232 ntBASIC16.18■□□□□ 0.18
RNF40O75150 AC113367.3-201ENST00000508316 1912 ntBASIC16.18■□□□□ 0.18
RNF40O75150 AC027612.1-201ENST00000445234 2395 ntBASIC16.18■□□□□ 0.18
RNF40O75150 SHPK-201ENST00000225519 3838 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
RNF40O75150 AL845321.1-202ENST00000432011 786 ntTSL 5 BASIC16.18■□□□□ 0.18
RNF40O75150 PRAP1-201ENST00000433452 971 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
RNF40O75150 AL353747.3-201ENST00000454185 579 ntTSL 3 BASIC16.18■□□□□ 0.18
RNF40O75150 CTBP2P5-201ENST00000454986 1264 ntBASIC16.18■□□□□ 0.18
RNF40O75150 PDCD6-202ENST00000505221 672 ntTSL 3 BASIC16.18■□□□□ 0.18
RNF40O75150 AC009686.1-201ENST00000522494 364 ntTSL 3 BASIC16.18■□□□□ 0.18
RNF40O75150 PACS1-203ENST00000524815 628 ntTSL 4 BASIC16.18■□□□□ 0.18
RNF40O75150 AC008115.1-201ENST00000542291 150 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
RNF40O75150 AL163974.1-201ENST00000554540 466 ntTSL 5 BASIC16.18■□□□□ 0.18
RNF40O75150 AC011489.1-202ENST00000586556 618 ntTSL 2 BASIC16.18■□□□□ 0.18
RNF40O75150 TUBB6-203ENST00000586653 788 ntTSL 2 BASIC16.18■□□□□ 0.18
RNF40O75150 Metazoa_SRP.80-201ENST00000619894 320 ntBASIC16.18■□□□□ 0.18
RNF40O75150 LILRA2-208ENST00000629481 661 ntTSL 2 BASIC16.18■□□□□ 0.18
RNF40O75150 APLP2-203ENST00000338167 3270 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
RNF40O75150 ZNF133-203ENST00000377671 2701 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
RNF40O75150 GRN-214ENST00000589265 1632 ntTSL 5 BASIC16.18■□□□□ 0.18
RNF40O75150 AP001267.2-201ENST00000532619 2086 ntBASIC16.18■□□□□ 0.18
RNF40O75150 ZNF655-201ENST00000252713 2535 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
RNF40O75150 CCDC90B-213ENST00000529611 1986 ntTSL 2 BASIC16.18■□□□□ 0.18
RNF40O75150 TRAF3-204ENST00000539721 1786 ntTSL 2 BASIC16.18■□□□□ 0.18
RNF40O75150 WNT3A-201ENST00000284523 2932 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
RNF40O75150 KCP-206ENST00000613019 4853 ntAPPRIS P5 TSL 5 BASIC16.18■□□□□ 0.18
RNF40O75150 MYO3A-201ENST00000265944 5581 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
RNF40O75150 ZBTB20-215ENST00000481632 2800 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
RNF40O75150 AC022400.6-201ENST00000603027 5818 ntAPPRIS P5 TSL 2 BASIC16.18■□□□□ 0.18
RNF40O75150 SCARA5-201ENST00000354914 4026 ntAPPRIS P1 TSL 2 BASIC16.17■□□□□ 0.18
RNF40O75150 HIST1H2AG-201ENST00000359193 2250 ntAPPRIS P1 BASIC16.17■□□□□ 0.18
RNF40O75150 CAPZB-204ENST00000375144 1568 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
RNF40O75150 MXD1-206ENST00000540449 5580 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
RNF40O75150 APBB3-201ENST00000354402 1810 ntTSL 5 BASIC16.17■□□□□ 0.18
RNF40O75150 LINC01205-202ENST00000497996 1493 ntTSL 2 BASIC16.17■□□□□ 0.18
RNF40O75150 LINC01185-202ENST00000452343 1705 ntTSL 2 BASIC16.17■□□□□ 0.18
RNF40O75150 PPP4R4-201ENST00000304338 3868 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
RNF40O75150 SLC7A4-202ENST00000403586 2307 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
RNF40O75150 MAPT-206ENST00000415613 2331 ntAPPRIS ALT2 TSL 5 BASIC16.17■□□□□ 0.18
RNF40O75150 TMEM231-207ENST00000568377 2920 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
RNF40O75150 LHX1-201ENST00000614239 3425 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
RNF40O75150 KIAA0141-201ENST00000194118 2203 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
RNF40O75150 SLC9A7P1-202ENST00000556476 2239 ntBASIC16.17■□□□□ 0.18
RNF40O75150 SRPRA-206ENST00000532259 2453 ntTSL 2 BASIC16.17■□□□□ 0.18
RNF40O75150 SYP-207ENST00000479808 1850 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
RNF40O75150 EIF4E-201ENST00000280892 1097 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
RNF40O75150 MRPL55-201ENST00000295008 632 ntAPPRIS P1 TSL 2 BASIC16.17■□□□□ 0.18
RNF40O75150 SHBG-202ENST00000380450 1271 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
RNF40O75150 AL354761.2-202ENST00000430816 546 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
RNF40O75150 EEF1DP4-201ENST00000446006 880 ntBASIC16.17■□□□□ 0.18
RNF40O75150 FAM25G-201ENST00000452267 345 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
RNF40O75150 AL121845.2-201ENST00000467211 252 ntAPPRIS P1 TSL 3 BASIC16.17■□□□□ 0.18
RNF40O75150 SELENOT-203ENST00000477889 944 ntTSL 5 BASIC16.17■□□□□ 0.18
RNF40O75150 HMGB3P14-201ENST00000494195 599 ntBASIC16.17■□□□□ 0.18
RNF40O75150 TDH-203ENST00000531764 1110 ntBASIC16.17■□□□□ 0.18
RNF40O75150 AC027601.2-201ENST00000571085 805 ntTSL 5 BASIC16.17■□□□□ 0.18
RNF40O75150 MIR5189-201ENST00000577370 114 ntBASIC16.17■□□□□ 0.18
RNF40O75150 ANKS3-227ENST00000592711 580 ntTSL 4 BASIC16.17■□□□□ 0.18
RNF40O75150 RPP40-207ENST00000618533 1056 ntTSL 5 BASIC16.17■□□□□ 0.18
RNF40O75150 PCSK6-221ENST00000632686 1210 ntTSL 5 BASIC16.17■□□□□ 0.18
RNF40O75150 TRPV4-202ENST00000418703 3247 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
RNF40O75150 PDIA3P1-201ENST00000471856 1510 ntBASIC16.17■□□□□ 0.18
RNF40O75150 ERICH5-201ENST00000318528 1761 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
RNF40O75150 CCDC6-201ENST00000263102 5811 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
RNF40O75150 PNPLA5-202ENST00000381198 2000 ntTSL 2 BASIC16.17■□□□□ 0.18
RNF40O75150 ZFP36L1-201ENST00000336440 3026 ntAPPRIS P1 TSL 2 BASIC16.17■□□□□ 0.18
RNF40O75150 SEMA4B-201ENST00000332496 3781 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
RNF40O75150 MINDY2-203ENST00000559228 9238 ntAPPRIS P3 TSL 2 BASIC16.17■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 31.3 ms