Protein–RNA interactions for Protein: Q9Y3P4

RHBDD3, Rhomboid domain-containing protein 3, humanhuman

Predictions only

Length 386 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RHBDD3Q9Y3P4 RGR-201ENST00000358110 1349 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
RHBDD3Q9Y3P4 CSPG4-201ENST00000308508 8290 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
RHBDD3Q9Y3P4 MTMR9-201ENST00000221086 7481 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
RHBDD3Q9Y3P4 PLTP-201ENST00000354050 1731 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
RHBDD3Q9Y3P4 AP1M1-211ENST00000590756 1705 ntTSL 5 BASIC13.1□□□□□ -0.31
RHBDD3Q9Y3P4 FBP1-203ENST00000415431 1487 ntAPPRIS P1 TSL 2 BASIC13.1□□□□□ -0.31
RHBDD3Q9Y3P4 AC007541.1-201ENST00000570282 1469 ntBASIC13.1□□□□□ -0.31
RHBDD3Q9Y3P4 ATP6V1H-201ENST00000355221 2365 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
RHBDD3Q9Y3P4 PHYHD1-203ENST00000372592 2133 ntAPPRIS P1 TSL 2 BASIC13.1□□□□□ -0.31
RHBDD3Q9Y3P4 CYP1A1-207ENST00000567032 2107 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
RHBDD3Q9Y3P4 ZNF655-201ENST00000252713 2535 ntAPPRIS P3 TSL 1 (best) BASIC13.1□□□□□ -0.31
RHBDD3Q9Y3P4 GCLC-201ENST00000229416 3813 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
RHBDD3Q9Y3P4 SERTAD2-201ENST00000313349 5549 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
RHBDD3Q9Y3P4 SPOCK3-210ENST00000506886 2947 ntAPPRIS ALT2 TSL 5 BASIC13.1□□□□□ -0.31
RHBDD3Q9Y3P4 PRKD2-202ENST00000433867 3321 ntAPPRIS P3 TSL 5 BASIC13.1□□□□□ -0.31
RHBDD3Q9Y3P4 SMARCA2-204ENST00000357248 5855 ntAPPRIS P1 TSL 5 BASIC13.1□□□□□ -0.31
RHBDD3Q9Y3P4 ECHDC2-203ENST00000371522 1509 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
RHBDD3Q9Y3P4 AMT-232ENST00000636199 1546 ntTSL 5 BASIC13.1□□□□□ -0.31
RHBDD3Q9Y3P4 ARMCX6-208ENST00000539247 1928 ntAPPRIS P1 TSL 4 BASIC13.1□□□□□ -0.31
RHBDD3Q9Y3P4 ADAM23-202ENST00000374415 2714 ntAPPRIS ALT1 TSL 5 BASIC13.1□□□□□ -0.31
RHBDD3Q9Y3P4 ATP13A2-202ENST00000341676 3681 ntAPPRIS ALT2 TSL 1 (best) BASIC13.1□□□□□ -0.31
RHBDD3Q9Y3P4 GABRA1-201ENST00000023897 2083 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
RHBDD3Q9Y3P4 BTBD10-208ENST00000528120 1662 ntTSL 2 BASIC13.1□□□□□ -0.31
RHBDD3Q9Y3P4 MYLK-203ENST00000359169 7585 ntAPPRIS P3 TSL 5 BASIC13.1□□□□□ -0.31
RHBDD3Q9Y3P4 FGFR1-201ENST00000326324 3816 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
RHBDD3Q9Y3P4 ZDHHC12-201ENST00000372663 1129 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
RHBDD3Q9Y3P4 DERL3-204ENST00000406855 1063 ntAPPRIS ALT2 TSL 1 (best) BASIC13.1□□□□□ -0.31
RHBDD3Q9Y3P4 AC134915.1-201ENST00000426461 574 ntBASIC13.1□□□□□ -0.31
RHBDD3Q9Y3P4 DFFBP1-201ENST00000433250 979 ntBASIC13.1□□□□□ -0.31
RHBDD3Q9Y3P4 LINC01818-201ENST00000437118 368 ntTSL 2 BASIC13.1□□□□□ -0.31
RHBDD3Q9Y3P4 LINC01812-201ENST00000457448 725 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
RHBDD3Q9Y3P4 SELENOT-203ENST00000477889 944 ntTSL 5 BASIC13.1□□□□□ -0.31
RHBDD3Q9Y3P4 TMEM218-210ENST00000529609 734 ntTSL 3 BASIC13.1□□□□□ -0.31
RHBDD3Q9Y3P4 AP002008.1-201ENST00000530283 1155 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
RHBDD3Q9Y3P4 FKBP11-208ENST00000550765 1030 ntAPPRIS P3 TSL 1 (best) BASIC13.1□□□□□ -0.31
RHBDD3Q9Y3P4 C17orf49-209ENST00000552775 779 ntTSL 5 BASIC13.1□□□□□ -0.31
RHBDD3Q9Y3P4 AC015712.4-202ENST00000558641 1007 ntTSL 4 BASIC13.1□□□□□ -0.31
RHBDD3Q9Y3P4 GCHFR-203ENST00000558670 412 ntTSL 3 BASIC13.1□□□□□ -0.31
RHBDD3Q9Y3P4 NUBP2-208ENST00000565987 1049 ntTSL 5 BASIC13.1□□□□□ -0.31
RHBDD3Q9Y3P4 HCFC1R1-203ENST00000572355 610 ntTSL 3 BASIC13.1□□□□□ -0.31
RHBDD3Q9Y3P4 AC079336.2-201ENST00000578408 927 ntTSL 3 BASIC13.1□□□□□ -0.31
RHBDD3Q9Y3P4 AC004233.3-201ENST00000607794 1269 ntBASIC13.1□□□□□ -0.31
RHBDD3Q9Y3P4 LINC01515-215ENST00000608678 854 ntTSL 5 BASIC13.1□□□□□ -0.31
RHBDD3Q9Y3P4 TAMM41-212ENST00000630288 607 ntTSL 2 BASIC13.1□□□□□ -0.31
RHBDD3Q9Y3P4 HFE2-206ENST00000634927 506 ntTSL 4 BASIC13.1□□□□□ -0.31
RHBDD3Q9Y3P4 ERLIN2-205ENST00000518586 2623 ntTSL 2 BASIC13.1□□□□□ -0.31
RHBDD3Q9Y3P4 RIC1-204ENST00000418622 6658 ntTSL 5 BASIC13.1□□□□□ -0.31
RHBDD3Q9Y3P4 LINC01138-206ENST00000622328 2212 ntTSL 2 BASIC13.1□□□□□ -0.31
RHBDD3Q9Y3P4 CDK2AP1-205ENST00000542174 1812 ntTSL 2 BASIC13.1□□□□□ -0.31
RHBDD3Q9Y3P4 THBD-201ENST00000377103 4109 ntAPPRIS P1 BASIC13.1□□□□□ -0.31
RHBDD3Q9Y3P4 ASF1A-201ENST00000229595 2362 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
RHBDD3Q9Y3P4 E2F6-201ENST00000307236 3317 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
RHBDD3Q9Y3P4 ACOT7-210ENST00000608083 1403 ntAPPRIS ALT2 TSL 1 (best) BASIC13.1□□□□□ -0.31
RHBDD3Q9Y3P4 FAM163A-201ENST00000341785 2909 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
RHBDD3Q9Y3P4 PREP-201ENST00000369110 2905 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
RHBDD3Q9Y3P4 AMACR-203ENST00000382072 2919 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
RHBDD3Q9Y3P4 AL354702.1-201ENST00000442006 1960 ntBASIC13.1□□□□□ -0.31
RHBDD3Q9Y3P4 CXorf36-201ENST00000377934 2513 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
RHBDD3Q9Y3P4 CFAP46-202ENST00000368586 8278 ntAPPRIS P2 TSL 5 BASIC13.1□□□□□ -0.31
RHBDD3Q9Y3P4 ANKRD13B-201ENST00000394859 3214 ntAPPRIS P1 TSL 2 BASIC13.1□□□□□ -0.31
RHBDD3Q9Y3P4 PPP1R12A-AS1-201ENST00000552885 3234 ntTSL 3 BASIC13.1□□□□□ -0.31
RHBDD3Q9Y3P4 SUCO-201ENST00000263688 5556 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
RHBDD3Q9Y3P4 TMEM212-201ENST00000334567 1881 ntAPPRIS P1 TSL 2 BASIC13.1□□□□□ -0.31
RHBDD3Q9Y3P4 IGF2-203ENST00000381395 4527 ntAPPRIS P2 TSL 2 BASIC13.1□□□□□ -0.31
RHBDD3Q9Y3P4 ZDHHC11-209ENST00000511539 1303 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
RHBDD3Q9Y3P4 INTS4P2-202ENST00000614726 2019 ntBASIC13.1□□□□□ -0.31
RHBDD3Q9Y3P4 GPRASP1-203ENST00000444152 5809 ntAPPRIS P1 TSL 3 BASIC13.1□□□□□ -0.31
RHBDD3Q9Y3P4 LAT-202ENST00000360872 1459 ntAPPRIS P3 TSL 2 BASIC13.1□□□□□ -0.31
RHBDD3Q9Y3P4 LRCH3-206ENST00000438796 7394 ntAPPRIS P5 TSL 2 BASIC13.1□□□□□ -0.31
RHBDD3Q9Y3P4 ATXN2L-204ENST00000382686 3739 ntAPPRIS ALT2 TSL 1 (best) BASIC13.1□□□□□ -0.31
RHBDD3Q9Y3P4 RGMB-201ENST00000308234 4580 ntAPPRIS P2 TSL 1 (best) BASIC13.1□□□□□ -0.31
RHBDD3Q9Y3P4 WAC-AS1-202ENST00000528337 2608 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
RHBDD3Q9Y3P4 TPM3-205ENST00000328159 1771 ntTSL 2 BASIC13.09□□□□□ -0.31
RHBDD3Q9Y3P4 TC2N-206ENST00000556018 1770 ntTSL 2 BASIC13.09□□□□□ -0.31
RHBDD3Q9Y3P4 ZSCAN32-215ENST00000618425 2788 ntTSL 2 BASIC13.09□□□□□ -0.31
RHBDD3Q9Y3P4 DMBT1P1-203ENST00000636837 4628 ntBASIC13.09□□□□□ -0.31
RHBDD3Q9Y3P4 CCNF-202ENST00000397066 4283 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
RHBDD3Q9Y3P4 MSI1-201ENST00000257552 2975 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
RHBDD3Q9Y3P4 CKM-201ENST00000221476 1657 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
RHBDD3Q9Y3P4 CYP20A1-203ENST00000429815 1812 ntTSL 2 BASIC13.09□□□□□ -0.31
RHBDD3Q9Y3P4 MIRLET7BHG-203ENST00000435439 2264 ntTSL 2 BASIC13.09□□□□□ -0.31
RHBDD3Q9Y3P4 OPN4-202ENST00000372071 2401 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
RHBDD3Q9Y3P4 NRP2-205ENST00000412873 2730 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
RHBDD3Q9Y3P4 ETFB-201ENST00000309244 900 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
RHBDD3Q9Y3P4 ENDOV-201ENST00000323854 1226 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
RHBDD3Q9Y3P4 CHST5-201ENST00000336257 3245 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
RHBDD3Q9Y3P4 SYCE1-202ENST00000343131 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC13.09□□□□□ -0.31
RHBDD3Q9Y3P4 MRPL55-215ENST00000366742 630 ntAPPRIS P1 TSL 2 BASIC13.09□□□□□ -0.31
RHBDD3Q9Y3P4 WNT2B-202ENST00000369684 3818 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
RHBDD3Q9Y3P4 BEX2-202ENST00000372677 899 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
RHBDD3Q9Y3P4 MPV17-203ENST00000380044 1005 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
RHBDD3Q9Y3P4 CSF2RB-202ENST00000403662 4863 ntAPPRIS P2 TSL 5 BASIC13.09□□□□□ -0.31
RHBDD3Q9Y3P4 INTS1-201ENST00000404767 6959 ntAPPRIS P1 TSL 5 BASIC13.09□□□□□ -0.31
RHBDD3Q9Y3P4 MPV17-208ENST00000405076 603 ntTSL 5 BASIC13.09□□□□□ -0.31
RHBDD3Q9Y3P4 RAB34-206ENST00000415040 1293 ntTSL 2 BASIC13.09□□□□□ -0.31
RHBDD3Q9Y3P4 MFNG-202ENST00000416983 2034 ntTSL 2 BASIC13.09□□□□□ -0.31
RHBDD3Q9Y3P4 ARHGEF3-212ENST00000495373 2024 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
RHBDD3Q9Y3P4 TMEM161B-AS1-202ENST00000501715 1101 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
RHBDD3Q9Y3P4 ZNF7-206ENST00000528130 1134 ntTSL 5 BASIC13.09□□□□□ -0.31
RHBDD3Q9Y3P4 AC138466.1-201ENST00000535242 391 ntTSL 3 BASIC13.09□□□□□ -0.31
Retrieved 100 of 98,524 protein–RNA pairs in 36.5 ms