Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 MCFD2-204ENST00000409207 1113 ntAPPRIS P1 TSL 2 BASIC15.88■□□□□ 0.13
SIX2Q9NPC8 CD8B2-202ENST00000417670 633 ntBASIC15.88■□□□□ 0.13
SIX2Q9NPC8 AC016694.1-201ENST00000434179 700 ntBASIC15.88■□□□□ 0.13
SIX2Q9NPC8 AC078785.1-201ENST00000496389 734 ntTSL 3 BASIC15.88■□□□□ 0.13
SIX2Q9NPC8 SLC45A2-204ENST00000509381 1040 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
SIX2Q9NPC8 AC109479.1-201ENST00000519603 624 ntTSL 2 BASIC15.88■□□□□ 0.13
SIX2Q9NPC8 MAP1LC3B2-202ENST00000556529 660 ntAPPRIS P1 TSL 3 BASIC15.88■□□□□ 0.13
SIX2Q9NPC8 AP000229.1-202ENST00000609365 559 ntTSL 4 BASIC15.88■□□□□ 0.13
SIX2Q9NPC8 AL022328.1-201ENST00000610050 478 ntBASIC15.88■□□□□ 0.13
SIX2Q9NPC8 AC006453.4-201ENST00000636949 1252 ntBASIC15.88■□□□□ 0.13
SIX2Q9NPC8 MVK-217ENST00000639206 367 ntTSL 5 BASIC15.88■□□□□ 0.13
SIX2Q9NPC8 AC002472.3-201ENST00000640124 621 ntBASIC15.88■□□□□ 0.13
SIX2Q9NPC8 PAF1-204ENST00000595564 1810 ntAPPRIS ALT2 TSL 2 BASIC15.88■□□□□ 0.13
SIX2Q9NPC8 KCNC3-202ENST00000474951 3347 ntTSL 2 BASIC15.88■□□□□ 0.13
SIX2Q9NPC8 GORASP2-201ENST00000234160 3173 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
SIX2Q9NPC8 PDE4C-207ENST00000594617 4655 ntAPPRIS P3 TSL 1 (best) BASIC15.88■□□□□ 0.13
SIX2Q9NPC8 SLC27A3-201ENST00000271857 3351 ntAPPRIS ALT2 TSL 1 (best) BASIC15.88■□□□□ 0.13
SIX2Q9NPC8 STXBP6-201ENST00000323944 4132 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
SIX2Q9NPC8 MKRN2-201ENST00000170447 2848 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
SIX2Q9NPC8 AC004890.2-205ENST00000416232 2804 ntTSL 2 BASIC15.88■□□□□ 0.13
SIX2Q9NPC8 PRPS1-204ENST00000372435 2073 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
SIX2Q9NPC8 SEMA3F-202ENST00000413852 3212 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
SIX2Q9NPC8 PMPCB-201ENST00000249269 2472 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
SIX2Q9NPC8 SC5D-201ENST00000264027 2456 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
SIX2Q9NPC8 DNMT3L-201ENST00000270172 1706 ntAPPRIS P3 TSL 1 (best) BASIC15.88■□□□□ 0.13
SIX2Q9NPC8 GPR137C-201ENST00000321662 3888 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
SIX2Q9NPC8 CCNF-202ENST00000397066 4283 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
SIX2Q9NPC8 UNC13A-205ENST00000551649 6052 ntAPPRIS ALT2 TSL 5 BASIC15.88■□□□□ 0.13
SIX2Q9NPC8 NHEG1-202ENST00000432330 1357 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
SIX2Q9NPC8 CLDND1-215ENST00000507874 1380 ntTSL 3 BASIC15.87■□□□□ 0.13
SIX2Q9NPC8 FAM180B-201ENST00000538490 1388 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
SIX2Q9NPC8 YPEL1-201ENST00000339468 4329 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
SIX2Q9NPC8 DDC-AS1-201ENST00000454521 1776 ntTSL 2 BASIC15.87■□□□□ 0.13
SIX2Q9NPC8 SPRY1-208ENST00000622283 2352 ntAPPRIS P1 TSL 2 BASIC15.87■□□□□ 0.13
SIX2Q9NPC8 FBRS-201ENST00000287468 2811 ntAPPRIS P1 TSL 5 BASIC15.87■□□□□ 0.13
SIX2Q9NPC8 PDYN-AS1-201ENST00000446562 1802 ntTSL 2 BASIC15.87■□□□□ 0.13
SIX2Q9NPC8 SLC8A3-204ENST00000381269 5268 ntAPPRIS ALT1 TSL 1 (best) BASIC15.87■□□□□ 0.13
SIX2Q9NPC8 TCEA2-203ENST00000361317 1427 ntTSL 2 BASIC15.87■□□□□ 0.13
SIX2Q9NPC8 HARS2-202ENST00000448069 1426 ntTSL 2 BASIC15.87■□□□□ 0.13
SIX2Q9NPC8 CUL1-201ENST00000325222 3064 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
SIX2Q9NPC8 ASPH-214ENST00000519234 2874 ntTSL 5 BASIC15.87■□□□□ 0.13
SIX2Q9NPC8 FAM83A-201ENST00000276699 1858 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
SIX2Q9NPC8 WNT3A-201ENST00000284523 2932 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
SIX2Q9NPC8 SPOCK3-202ENST00000357545 2936 ntAPPRIS P3 TSL 1 (best) BASIC15.87■□□□□ 0.13
SIX2Q9NPC8 C2-205ENST00000418949 1658 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
SIX2Q9NPC8 TMEM65-201ENST00000297632 9029 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
SIX2Q9NPC8 LINC02396-202ENST00000550636 2324 ntTSL 2 BASIC15.87■□□□□ 0.13
SIX2Q9NPC8 NCR1-202ENST00000338835 973 ntAPPRIS ALT2 TSL 1 (best) BASIC15.87■□□□□ 0.13
SIX2Q9NPC8 SP6-201ENST00000342234 3800 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
SIX2Q9NPC8 NCR1-203ENST00000350790 739 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
SIX2Q9NPC8 IGLV4-69-201ENST00000390282 419 ntAPPRIS P1 BASIC15.87■□□□□ 0.13
SIX2Q9NPC8 AC104135.1-201ENST00000418001 763 ntTSL 5 BASIC15.87■□□□□ 0.13
SIX2Q9NPC8 C2orf27AP3-201ENST00000434123 579 ntBASIC15.87■□□□□ 0.13
SIX2Q9NPC8 GLIS3-AS1-201ENST00000451340 734 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
SIX2Q9NPC8 PRPS2-205ENST00000489404 763 ntTSL 2 BASIC15.87■□□□□ 0.13
SIX2Q9NPC8 AC139713.2-206ENST00000499587 566 ntTSL 4 BASIC15.87■□□□□ 0.13
SIX2Q9NPC8 MRPL52-216ENST00000557221 922 ntTSL 2 BASIC15.87■□□□□ 0.13
SIX2Q9NPC8 LINC00621-201ENST00000577004 1177 ntTSL 4 BASIC15.87■□□□□ 0.13
SIX2Q9NPC8 AC024619.2-201ENST00000581964 517 ntTSL 5 BASIC15.87■□□□□ 0.13
SIX2Q9NPC8 SLC35G4-201ENST00000588001 1017 ntAPPRIS P1 BASIC15.87■□□□□ 0.13
SIX2Q9NPC8 YIF1B-216ENST00000592694 1181 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
SIX2Q9NPC8 AL358472.3-201ENST00000608147 415 ntBASIC15.87■□□□□ 0.13
SIX2Q9NPC8 AL354718.3-201ENST00000616414 581 ntBASIC15.87■□□□□ 0.13
SIX2Q9NPC8 MLLT10-216ENST00000621220 381 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
SIX2Q9NPC8 CR382287.1-201ENST00000623954 586 ntBASIC15.87■□□□□ 0.13
SIX2Q9NPC8 RIC8A-217ENST00000626818 159 ntTSL 5 BASIC15.87■□□□□ 0.13
SIX2Q9NPC8 PAK3-208ENST00000446737 2550 ntAPPRIS P3 TSL 1 (best) BASIC15.87■□□□□ 0.13
SIX2Q9NPC8 IGF2BP2-202ENST00000382199 3688 ntAPPRIS P3 TSL 1 (best) BASIC15.87■□□□□ 0.13
SIX2Q9NPC8 CNN2-201ENST00000263097 2179 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
SIX2Q9NPC8 CNN2-205ENST00000562958 2194 ntTSL 2 BASIC15.87■□□□□ 0.13
SIX2Q9NPC8 UBE3B-212ENST00000540230 1541 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
SIX2Q9NPC8 AL589669.1-201ENST00000639829 1506 ntTSL 5 BASIC15.87■□□□□ 0.13
SIX2Q9NPC8 DDX41-208ENST00000507955 2607 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
SIX2Q9NPC8 CSAD-203ENST00000379846 1962 ntTSL 5 BASIC15.87■□□□□ 0.13
SIX2Q9NPC8 ECE1-204ENST00000415912 5099 ntAPPRIS ALT1 TSL 1 (best) BASIC15.87■□□□□ 0.13
SIX2Q9NPC8 CTSW-201ENST00000307886 1300 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
SIX2Q9NPC8 NANOS1-202ENST00000425699 4017 ntAPPRIS P2 BASIC15.87■□□□□ 0.13
SIX2Q9NPC8 SIK1-201ENST00000270162 4712 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
SIX2Q9NPC8 CPN2-202ENST00000429275 2008 ntAPPRIS P1 TSL 5 BASIC15.87■□□□□ 0.13
SIX2Q9NPC8 CU639417.2-201ENST00000613488 4705 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
SIX2Q9NPC8 ACSM2A-202ENST00000396104 2734 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
SIX2Q9NPC8 TEX44-201ENST00000313965 1383 ntAPPRIS P1 BASIC15.87■□□□□ 0.13
SIX2Q9NPC8 LAT2-205ENST00000460943 2527 ntAPPRIS P2 TSL 1 (best) BASIC15.87■□□□□ 0.13
SIX2Q9NPC8 NARFL-202ENST00000540986 3212 ntTSL 2 BASIC15.87■□□□□ 0.13
SIX2Q9NPC8 CALCB-203ENST00000533448 2097 ntAPPRIS P1 TSL 2 BASIC15.87■□□□□ 0.13
SIX2Q9NPC8 GP1BA-202ENST00000611961 2339 ntAPPRIS ALT2 TSL 5 BASIC15.86■□□□□ 0.13
SIX2Q9NPC8 STK33-203ENST00000396672 2558 ntAPPRIS P1 TSL 2 BASIC15.86■□□□□ 0.13
SIX2Q9NPC8 KCTD15-201ENST00000284006 4918 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
SIX2Q9NPC8 VRK3-217ENST00000599538 2126 ntAPPRIS P3 TSL 1 (best) BASIC15.86■□□□□ 0.13
SIX2Q9NPC8 FOXRED2-204ENST00000397224 4967 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
SIX2Q9NPC8 CLUH-202ENST00000570628 5244 ntAPPRIS P2 TSL 2 BASIC15.86■□□□□ 0.13
SIX2Q9NPC8 CU639417.3-201ENST00000624240 1404 ntBASIC15.86■□□□□ 0.13
SIX2Q9NPC8 SAPCD2-201ENST00000409687 3848 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
SIX2Q9NPC8 INPP5D-201ENST00000359570 5274 ntAPPRIS ALT2 TSL 1 (best) BASIC15.86■□□□□ 0.13
SIX2Q9NPC8 ATXN7-213ENST00000538065 6842 ntAPPRIS ALT2 TSL 1 (best) BASIC15.86■□□□□ 0.13
SIX2Q9NPC8 SLC1A6-201ENST00000221742 1719 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
SIX2Q9NPC8 BCAR1-205ENST00000420641 2725 ntAPPRIS ALT2 TSL 2 BASIC15.86■□□□□ 0.13
SIX2Q9NPC8 SALL3-201ENST00000536229 3997 ntTSL 3 BASIC15.86■□□□□ 0.13
SIX2Q9NPC8 MYLIP-201ENST00000349606 2796 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
SIX2Q9NPC8 ENDOV-206ENST00000518901 2549 ntTSL 2 BASIC15.86■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 53.7 ms