Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 NXN-210ENST00000575801 2681 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
SHANK3Q9BYB0 ADRB3-201ENST00000345060 2950 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
SHANK3Q9BYB0 TOM1L2-202ENST00000379504 2418 ntAPPRIS P1 TSL 2 BASIC18.57■□□□□ 0.56
SHANK3Q9BYB0 AMT-256ENST00000638063 1783 ntTSL 5 BASIC18.57■□□□□ 0.56
SHANK3Q9BYB0 CCL18-201ENST00000616054 1324 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
SHANK3Q9BYB0 ZNF213-206ENST00000574902 3208 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
SHANK3Q9BYB0 COQ4-201ENST00000300452 1548 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
SHANK3Q9BYB0 EML2-203ENST00000536630 2791 ntAPPRIS ALT2 TSL 2 BASIC18.57■□□□□ 0.56
SHANK3Q9BYB0 PPP2R5D-206ENST00000472118 2963 ntAPPRIS ALT2 TSL 5 BASIC18.57■□□□□ 0.56
SHANK3Q9BYB0 TBL2-201ENST00000305632 3161 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
SHANK3Q9BYB0 CDC42SE2-202ENST00000395246 3485 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
SHANK3Q9BYB0 SNX2-201ENST00000379516 2128 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
SHANK3Q9BYB0 CMTM1-201ENST00000328020 981 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
SHANK3Q9BYB0 CMTM1-202ENST00000332695 624 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
SHANK3Q9BYB0 PIFO-201ENST00000369737 746 ntTSL 2 BASIC18.57■□□□□ 0.56
SHANK3Q9BYB0 CMTM1-205ENST00000379500 1064 ntAPPRIS P4 TSL 1 (best) BASIC18.57■□□□□ 0.56
SHANK3Q9BYB0 MIR566-201ENST00000385187 94 ntBASIC18.57■□□□□ 0.56
SHANK3Q9BYB0 SF3B1-204ENST00000414963 651 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
SHANK3Q9BYB0 FOXP4-AS1-202ENST00000432751 409 ntTSL 2 BASIC18.57■□□□□ 0.56
SHANK3Q9BYB0 CMTM1-209ENST00000528324 749 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
SHANK3Q9BYB0 CMTM1-217ENST00000533666 493 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
SHANK3Q9BYB0 TNNI1-205ENST00000555948 580 ntTSL 5 BASIC18.57■□□□□ 0.56
SHANK3Q9BYB0 AC012174.1-201ENST00000562349 714 ntTSL 3 BASIC18.57■□□□□ 0.56
SHANK3Q9BYB0 LOXL1-AS1-207ENST00000565689 735 ntTSL 3 BASIC18.57■□□□□ 0.56
SHANK3Q9BYB0 AC005154.1-232ENST00000582549 556 ntTSL 5 BASIC18.57■□□□□ 0.56
SHANK3Q9BYB0 MBD4-206ENST00000507208 2194 ntAPPRIS ALT2 TSL 2 BASIC18.57■□□□□ 0.56
SHANK3Q9BYB0 SLC6A2-204ENST00000561820 2268 ntTSL 5 BASIC18.57■□□□□ 0.56
SHANK3Q9BYB0 AJ011931.1-201ENST00000618749 2492 ntBASIC18.57■□□□□ 0.56
SHANK3Q9BYB0 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
SHANK3Q9BYB0 FOXO1-201ENST00000379561 5735 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
SHANK3Q9BYB0 LGALS8-203ENST00000341872 2437 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
SHANK3Q9BYB0 MECR-202ENST00000373791 2416 ntTSL 2 BASIC18.56■□□□□ 0.56
SHANK3Q9BYB0 PCK2-208ENST00000559250 1804 ntTSL 5 BASIC18.56■□□□□ 0.56
SHANK3Q9BYB0 NCF4-202ENST00000397147 1641 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
SHANK3Q9BYB0 CTSV-201ENST00000259470 1546 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
SHANK3Q9BYB0 RBFOX1-205ENST00000436368 1530 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
SHANK3Q9BYB0 EMP1-211ENST00000544053 1436 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
SHANK3Q9BYB0 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
SHANK3Q9BYB0 TLE3-203ENST00000451782 2356 ntAPPRIS ALT1 TSL 5 BASIC18.56■□□□□ 0.56
SHANK3Q9BYB0 ZPBP2-202ENST00000377940 2177 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
SHANK3Q9BYB0 Z99756.1-201ENST00000458463 1951 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
SHANK3Q9BYB0 SIAE-206ENST00000618733 1980 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
SHANK3Q9BYB0 LINC01662-201ENST00000342888 1859 ntTSL 2 BASIC18.56■□□□□ 0.56
SHANK3Q9BYB0 UBE2A-202ENST00000371558 1874 ntAPPRIS P2 TSL 1 (best) BASIC18.56■□□□□ 0.56
SHANK3Q9BYB0 BBS1-202ENST00000393994 1790 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
SHANK3Q9BYB0 TMEM230-202ENST00000342308 1562 ntTSL 2 BASIC18.56■□□□□ 0.56
SHANK3Q9BYB0 AC022080.1-201ENST00000366255 781 ntBASIC18.56■□□□□ 0.56
SHANK3Q9BYB0 MANEA-202ENST00000369293 1076 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
SHANK3Q9BYB0 AC073210.1-201ENST00000414799 232 ntBASIC18.56■□□□□ 0.56
SHANK3Q9BYB0 Z82188.2-201ENST00000419128 630 ntTSL 5 BASIC18.56■□□□□ 0.56
SHANK3Q9BYB0 PSMB8-AS1-204ENST00000429600 996 ntTSL 2 BASIC18.56■□□□□ 0.56
SHANK3Q9BYB0 AL512599.1-201ENST00000430724 685 ntBASIC18.56■□□□□ 0.56
SHANK3Q9BYB0 AC022447.6-201ENST00000515522 438 ntBASIC18.56■□□□□ 0.56
SHANK3Q9BYB0 AC011921.1-201ENST00000559739 557 ntTSL 4 BASIC18.56■□□□□ 0.56
SHANK3Q9BYB0 STRADA-221ENST00000582137 1238 ntTSL 2 BASIC18.56■□□□□ 0.56
SHANK3Q9BYB0 CYP4F36P-201ENST00000589193 186 ntBASIC18.56■□□□□ 0.56
SHANK3Q9BYB0 AC010127.1-202ENST00000597623 713 ntTSL 2 BASIC18.56■□□□□ 0.56
SHANK3Q9BYB0 CYP20A1-203ENST00000429815 1812 ntTSL 2 BASIC18.56■□□□□ 0.56
SHANK3Q9BYB0 ZNF286A-218ENST00000583566 1806 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
SHANK3Q9BYB0 PPP4R3A-208ENST00000555462 3236 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
SHANK3Q9BYB0 GPD2-208ENST00000438166 2457 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
SHANK3Q9BYB0 HNRNPUL1-220ENST00000602130 2932 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
SHANK3Q9BYB0 BTNL8-203ENST00000400707 1512 ntTSL 2 BASIC18.56■□□□□ 0.56
SHANK3Q9BYB0 FNDC5-201ENST00000373471 2732 ntAPPRIS ALT2 TSL 2 BASIC18.56■□□□□ 0.56
SHANK3Q9BYB0 INPP5J-207ENST00000405300 2515 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
SHANK3Q9BYB0 TFPI2-201ENST00000222543 2444 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
SHANK3Q9BYB0 GSN-215ENST00000545652 2428 ntTSL 2 BASIC18.56■□□□□ 0.56
SHANK3Q9BYB0 CRK-202ENST00000398970 3675 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
SHANK3Q9BYB0 NAALADL1-203ENST00000356632 2118 ntTSL 5 BASIC18.56■□□□□ 0.56
SHANK3Q9BYB0 AC006486.2-201ENST00000624246 2199 ntBASIC18.55■□□□□ 0.56
SHANK3Q9BYB0 DTX4-201ENST00000227451 5642 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
SHANK3Q9BYB0 HSPB7-202ENST00000375718 2415 ntTSL 2 BASIC18.55■□□□□ 0.56
SHANK3Q9BYB0 PGAM2-201ENST00000297283 857 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
SHANK3Q9BYB0 TNNT1-202ENST00000356783 934 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
SHANK3Q9BYB0 UBE2I-206ENST00000403747 1217 ntAPPRIS P1 TSL 5 BASIC18.55■□□□□ 0.56
SHANK3Q9BYB0 AL929302.1-201ENST00000426556 871 ntBASIC18.55■□□□□ 0.56
SHANK3Q9BYB0 BPIFB5P-201ENST00000457066 1099 ntBASIC18.55■□□□□ 0.56
SHANK3Q9BYB0 C21orf62-204ENST00000490358 1155 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
SHANK3Q9BYB0 C12orf73-210ENST00000552940 685 ntTSL 2 BASIC18.55■□□□□ 0.56
SHANK3Q9BYB0 AC090001.1-201ENST00000553194 467 ntTSL 3 BASIC18.55■□□□□ 0.56
SHANK3Q9BYB0 AC011444.1-201ENST00000587836 639 ntTSL 3 BASIC18.55■□□□□ 0.56
SHANK3Q9BYB0 ZBTB37-203ENST00000367704 2323 ntTSL 2 BASIC18.55■□□□□ 0.56
SHANK3Q9BYB0 AADAT-206ENST00000509167 2113 ntAPPRIS ALT1 TSL 1 (best) BASIC18.55■□□□□ 0.56
SHANK3Q9BYB0 FAM168A-202ENST00000356467 1767 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
SHANK3Q9BYB0 ADAMTS8-201ENST00000257359 4010 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
SHANK3Q9BYB0 MC5R-201ENST00000324750 1319 ntAPPRIS P1 BASIC18.55■□□□□ 0.56
SHANK3Q9BYB0 ZMYM3-203ENST00000373981 1841 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
SHANK3Q9BYB0 NEK11-205ENST00000507910 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
SHANK3Q9BYB0 HIF3A-206ENST00000472815 1709 ntTSL 2 BASIC18.55■□□□□ 0.56
SHANK3Q9BYB0 GNPNAT1-203ENST00000554230 2238 ntTSL 5 BASIC18.55■□□□□ 0.56
SHANK3Q9BYB0 SCAMP4-202ENST00000409472 2394 ntTSL 2 BASIC18.55■□□□□ 0.56
SHANK3Q9BYB0 PLAT-205ENST00000519510 2030 ntTSL 5 BASIC18.55■□□□□ 0.56
SHANK3Q9BYB0 FDFT1-214ENST00000528812 2013 ntTSL 2 BASIC18.55■□□□□ 0.56
SHANK3Q9BYB0 OXSM-201ENST00000280701 1519 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
SHANK3Q9BYB0 TNNT3-201ENST00000278317 1210 ntAPPRIS P3 TSL 5 BASIC18.54■□□□□ 0.56
SHANK3Q9BYB0 PGLYRP3-201ENST00000290722 1173 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
SHANK3Q9BYB0 SAT1-201ENST00000379251 801 ntTSL 2 BASIC18.54■□□□□ 0.56
SHANK3Q9BYB0 SAT1-202ENST00000379253 909 ntTSL 2 BASIC18.54■□□□□ 0.56
SHANK3Q9BYB0 SAT1-203ENST00000379254 868 ntTSL 3 BASIC18.54■□□□□ 0.56
SHANK3Q9BYB0 SAT1-204ENST00000379270 1065 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 94.9 ms