Protein–RNA interactions for Protein: Q96RY7

IFT140, Intraflagellar transport protein 140 homolog, humanhuman

Predictions only

Length 1,462 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
IFT140Q96RY7 ARNTL-205ENST00000403510 2745 ntTSL 2 BASIC23.69■■□□□ 1.38
IFT140Q96RY7 ARHGAP27-214ENST00000532891 2604 ntAPPRIS ALT2 TSL 5 BASIC23.69■■□□□ 1.38
IFT140Q96RY7 BID-213ENST00000615414 2236 ntTSL 5 BASIC23.69■■□□□ 1.38
IFT140Q96RY7 RECQL5-202ENST00000340830 1749 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
IFT140Q96RY7 SH2D3C-203ENST00000373277 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC23.69■■□□□ 1.38
IFT140Q96RY7 C18orf8-201ENST00000269221 2162 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
IFT140Q96RY7 MYRF-203ENST00000389602 2052 ntTSL 2 BASIC23.69■■□□□ 1.38
IFT140Q96RY7 ZBTB11-AS1-201ENST00000609682 2743 ntBASIC23.69■■□□□ 1.38
IFT140Q96RY7 SOBP-201ENST00000317357 5245 ntAPPRIS P1 TSL 5 BASIC23.69■■□□□ 1.38
IFT140Q96RY7 RPARP-AS1-202ENST00000492465 1556 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
IFT140Q96RY7 ERICH1-206ENST00000522706 1551 ntAPPRIS ALT2 TSL 5 BASIC23.69■■□□□ 1.38
IFT140Q96RY7 URI1-202ENST00000392271 3444 ntAPPRIS P3 TSL 1 (best) BASIC23.69■■□□□ 1.38
IFT140Q96RY7 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC23.69■■□□□ 1.38
IFT140Q96RY7 ZP3-204ENST00000416245 1846 ntTSL 2 BASIC23.69■■□□□ 1.38
IFT140Q96RY7 BMP2K-201ENST00000335016 3804 ntAPPRIS ALT2 TSL 5 BASIC23.68■■□□□ 1.38
IFT140Q96RY7 TMEM14B-201ENST00000379530 787 ntTSL 2 BASIC23.68■■□□□ 1.38
IFT140Q96RY7 POLR3H-204ENST00000407461 802 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
IFT140Q96RY7 ARSEP1-202ENST00000430152 499 ntTSL 3 BASIC23.68■■□□□ 1.38
IFT140Q96RY7 RN7SL351P-201ENST00000469306 248 ntBASIC23.68■■□□□ 1.38
IFT140Q96RY7 AC026412.1-206ENST00000502273 206 ntBASIC23.68■■□□□ 1.38
IFT140Q96RY7 BAK1P2-201ENST00000532665 631 ntBASIC23.68■■□□□ 1.38
IFT140Q96RY7 CHRNA2-201ENST00000240132 1735 ntAPPRIS ALT2 TSL 2 BASIC23.68■■□□□ 1.38
IFT140Q96RY7 SLC6A13-203ENST00000445055 1950 ntTSL 2 BASIC23.68■■□□□ 1.38
IFT140Q96RY7 HPGD-209ENST00000510901 1535 ntTSL 2 BASIC23.68■■□□□ 1.38
IFT140Q96RY7 ZNF419-201ENST00000221735 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC23.68■■□□□ 1.38
IFT140Q96RY7 ADORA1-203ENST00000367235 2219 ntTSL 2 BASIC23.68■■□□□ 1.38
IFT140Q96RY7 OXA1L-202ENST00000358043 1750 ntTSL 2 BASIC23.68■■□□□ 1.38
IFT140Q96RY7 FAM86C1-201ENST00000346333 2010 ntAPPRIS P3 TSL 1 (best) BASIC23.68■■□□□ 1.38
IFT140Q96RY7 SUCLA2-201ENST00000378654 2192 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
IFT140Q96RY7 PEX11B-201ENST00000369306 1740 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
IFT140Q96RY7 SEC13-209ENST00000397117 1603 ntTSL 5 BASIC23.68■■□□□ 1.38
IFT140Q96RY7 AC015688.4-201ENST00000580780 1647 ntBASIC23.68■■□□□ 1.38
IFT140Q96RY7 AC007743.1-201ENST00000596663 3075 ntTSL 2 BASIC23.68■■□□□ 1.38
IFT140Q96RY7 OLFML2B-202ENST00000367938 1153 ntTSL 2 BASIC23.68■■□□□ 1.38
IFT140Q96RY7 TPM3-211ENST00000368531 1115 ntTSL 1 (best) BASIC23.68■■□□□ 1.38
IFT140Q96RY7 OR2W2P-201ENST00000406313 909 ntBASIC23.68■■□□□ 1.38
IFT140Q96RY7 BUD23-204ENST00000423497 1219 ntTSL 5 BASIC23.68■■□□□ 1.38
IFT140Q96RY7 PGAP2-207ENST00000463452 931 ntAPPRIS P1 TSL 2 BASIC23.68■■□□□ 1.38
IFT140Q96RY7 SBSN-202ENST00000518157 957 ntAPPRIS P3 TSL 1 (best) BASIC23.68■■□□□ 1.38
IFT140Q96RY7 AP003031.2-205ENST00000531263 683 ntTSL 2 BASIC23.68■■□□□ 1.38
IFT140Q96RY7 AAMDC-210ENST00000532481 690 ntTSL 1 (best) BASIC23.68■■□□□ 1.38
IFT140Q96RY7 AC011921.1-201ENST00000559739 557 ntTSL 4 BASIC23.68■■□□□ 1.38
IFT140Q96RY7 AC005586.2-201ENST00000563946 837 ntBASIC23.68■■□□□ 1.38
IFT140Q96RY7 MYMX-201ENST00000573382 817 ntAPPRIS P1 TSL 5 BASIC23.68■■□□□ 1.38
IFT140Q96RY7 KRT8P34-201ENST00000577607 1044 ntBASIC23.68■■□□□ 1.38
IFT140Q96RY7 AL050341.2-201ENST00000567508 1541 ntBASIC23.68■■□□□ 1.38
IFT140Q96RY7 SHISA2-201ENST00000319420 2860 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
IFT140Q96RY7 CDKN1A-203ENST00000405375 2267 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
IFT140Q96RY7 PTGR1-205ENST00000407693 1407 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
IFT140Q96RY7 CDK11A-201ENST00000356200 2653 ntTSL 5 BASIC23.67■■□□□ 1.38
IFT140Q96RY7 RBPMS-204ENST00000397323 2941 ntAPPRIS P3 TSL 1 (best) BASIC23.67■■□□□ 1.38
IFT140Q96RY7 ARL5A-201ENST00000295087 5326 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
IFT140Q96RY7 GRAMD1B-214ENST00000635736 2814 ntAPPRIS P1 TSL 5 BASIC23.67■■□□□ 1.38
IFT140Q96RY7 CD3EAP-202ENST00000589804 1830 ntAPPRIS ALT2 TSL 1 (best) BASIC23.67■■□□□ 1.38
IFT140Q96RY7 ERP29-202ENST00000455836 1333 ntTSL 2 BASIC23.67■■□□□ 1.38
IFT140Q96RY7 MEN1-202ENST00000315422 3148 ntAPPRIS ALT1 TSL 5 BASIC23.67■■□□□ 1.38
IFT140Q96RY7 ALDOA-201ENST00000338110 2384 ntAPPRIS P2 TSL 1 (best) BASIC23.67■■□□□ 1.38
IFT140Q96RY7 PLK2-215ENST00000617412 2792 ntTSL 5 BASIC23.67■■□□□ 1.38
IFT140Q96RY7 PTPN12-201ENST00000248594 3406 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
IFT140Q96RY7 MAP4K1-208ENST00000589130 2654 ntTSL 5 BASIC23.67■■□□□ 1.38
IFT140Q96RY7 HMGA1-202ENST00000347617 1773 ntAPPRIS ALT1 TSL 1 (best) BASIC23.67■■□□□ 1.38
IFT140Q96RY7 AHCYL1-202ENST00000369799 4015 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
IFT140Q96RY7 ZNF839-202ENST00000442396 2987 ntAPPRIS P3 TSL 5 BASIC23.67■■□□□ 1.38
IFT140Q96RY7 CCHCR1-202ENST00000396263 2490 ntTSL 5 BASIC23.67■■□□□ 1.38
IFT140Q96RY7 PDE4C-204ENST00000539010 1699 ntTSL 1 (best) BASIC23.67■■□□□ 1.38
IFT140Q96RY7 TCEA3-201ENST00000374601 1197 ntTSL 1 (best) BASIC23.67■■□□□ 1.38
IFT140Q96RY7 SFMBT2-202ENST00000379711 692 ntTSL 5 BASIC23.67■■□□□ 1.38
IFT140Q96RY7 FRGCA-201ENST00000424933 422 ntTSL 3 BASIC23.67■■□□□ 1.38
IFT140Q96RY7 CBR3-AS1-202ENST00000427491 741 ntTSL 1 (best) BASIC23.67■■□□□ 1.38
IFT140Q96RY7 FDPSP7-201ENST00000429043 1054 ntBASIC23.67■■□□□ 1.38
IFT140Q96RY7 RPSAP12-201ENST00000435879 888 ntBASIC23.67■■□□□ 1.38
IFT140Q96RY7 AC004893.2-203ENST00000482799 796 ntTSL 3 BASIC23.67■■□□□ 1.38
IFT140Q96RY7 ACER3-205ENST00000526597 1269 ntTSL 2 BASIC23.67■■□□□ 1.38
IFT140Q96RY7 AC007656.1-201ENST00000552238 573 ntTSL 4 BASIC23.67■■□□□ 1.38
IFT140Q96RY7 CBR3-AS1-207ENST00000608641 777 ntTSL 5 BASIC23.67■■□□□ 1.38
IFT140Q96RY7 AC020922.4-201ENST00000621389 339 ntBASIC23.67■■□□□ 1.38
IFT140Q96RY7 Metazoa_SRP.156-201ENST00000622344 262 ntBASIC23.67■■□□□ 1.38
IFT140Q96RY7 TK2-203ENST00000451102 3738 ntAPPRIS ALT2 TSL 1 (best) BASIC23.67■■□□□ 1.38
IFT140Q96RY7 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC23.67■■□□□ 1.38
IFT140Q96RY7 FOXL2-201ENST00000330315 2917 ntAPPRIS P1 BASIC23.67■■□□□ 1.38
IFT140Q96RY7 APBB1-220ENST00000609331 1574 ntTSL 5 BASIC23.67■■□□□ 1.38
IFT140Q96RY7 STKLD1-201ENST00000371957 2825 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
IFT140Q96RY7 INSC-208ENST00000530161 1702 ntAPPRIS ALT2 TSL 1 (best) BASIC23.67■■□□□ 1.38
IFT140Q96RY7 LPCAT4-209ENST00000617710 1719 ntTSL 5 BASIC23.67■■□□□ 1.38
IFT140Q96RY7 ADM-201ENST00000278175 1885 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
IFT140Q96RY7 CHRNB1-201ENST00000306071 2557 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
IFT140Q96RY7 LMF1-201ENST00000262301 2621 ntAPPRIS P1 TSL 5 BASIC23.66■■□□□ 1.38
IFT140Q96RY7 KHK-201ENST00000260598 2397 ntAPPRIS P5 TSL 2 BASIC23.66■■□□□ 1.38
IFT140Q96RY7 IL18BP-201ENST00000260049 1354 ntAPPRIS P2 TSL 1 (best) BASIC23.66■■□□□ 1.38
IFT140Q96RY7 FGFR3-202ENST00000340107 4293 ntAPPRIS ALT2 TSL 5 BASIC23.66■■□□□ 1.38
IFT140Q96RY7 STOML1-206ENST00000561656 1833 ntTSL 3 BASIC23.66■■□□□ 1.38
IFT140Q96RY7 BCAR3-210ENST00000539242 2114 ntTSL 1 (best) BASIC23.66■■□□□ 1.38
IFT140Q96RY7 PNO1-201ENST00000263657 2286 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
IFT140Q96RY7 DENND1A-202ENST00000373620 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC23.66■■□□□ 1.38
IFT140Q96RY7 FCN2-202ENST00000350339 943 ntAPPRIS ALT2 TSL 5 BASIC23.66■■□□□ 1.38
IFT140Q96RY7 NSMCE1-201ENST00000361439 1067 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
IFT140Q96RY7 PMF1-203ENST00000368279 1019 ntTSL 2 BASIC23.66■■□□□ 1.38
IFT140Q96RY7 CD79B-203ENST00000392795 1254 ntTSL 1 (best) BASIC23.66■■□□□ 1.38
IFT140Q96RY7 U73169.1-201ENST00000395152 367 ntBASIC23.66■■□□□ 1.38
IFT140Q96RY7 ACTBP14-201ENST00000411655 1089 ntBASIC23.66■■□□□ 1.38
Retrieved 100 of 98,524 protein–RNA pairs in 40.9 ms