Protein–RNA interactions for Protein: Q8NEL0

CCDC54, Coiled-coil domain-containing protein 54, humanhuman

Predictions only

Length 328 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54Q8NEL0 C21orf58-204ENST00000397682 2941 ntAPPRIS ALT2 TSL 1 (best) BASIC13.06□□□□□ -0.32
CCDC54Q8NEL0 LINC00839-202ENST00000429940 2253 ntTSL 2 BASIC13.06□□□□□ -0.32
CCDC54Q8NEL0 TPM3-208ENST00000341485 2063 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
CCDC54Q8NEL0 LHX1-201ENST00000614239 3425 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
CCDC54Q8NEL0 ZNF576-203ENST00000525771 2327 ntAPPRIS P1 TSL 2 BASIC13.06□□□□□ -0.32
CCDC54Q8NEL0 AP004608.1-203ENST00000528482 3679 ntTSL 5 BASIC13.06□□□□□ -0.32
CCDC54Q8NEL0 IMPDH1-203ENST00000354269 2580 ntTSL 2 BASIC13.06□□□□□ -0.32
CCDC54Q8NEL0 SLC27A4-201ENST00000300456 3028 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
CCDC54Q8NEL0 LGR5-201ENST00000266674 4611 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
CCDC54Q8NEL0 CEP131-203ENST00000450824 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC13.06□□□□□ -0.32
CCDC54Q8NEL0 CHRNB4-201ENST00000261751 2623 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
CCDC54Q8NEL0 POLR2J-201ENST00000292614 932 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
CCDC54Q8NEL0 KRTAP19-7-201ENST00000334849 440 ntAPPRIS P1 BASIC13.06□□□□□ -0.32
CCDC54Q8NEL0 DUPD1-201ENST00000338487 663 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
CCDC54Q8NEL0 MB-201ENST00000359787 1170 ntAPPRIS P1 TSL 2 BASIC13.06□□□□□ -0.32
CCDC54Q8NEL0 C1orf43-203ENST00000368516 872 ntTSL 2 BASIC13.06□□□□□ -0.32
CCDC54Q8NEL0 C1orf43-205ENST00000368519 1163 ntTSL 2 BASIC13.06□□□□□ -0.32
CCDC54Q8NEL0 PKIG-202ENST00000372886 1180 ntAPPRIS P1 TSL 2 BASIC13.06□□□□□ -0.32
CCDC54Q8NEL0 MB-202ENST00000397326 1197 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
CCDC54Q8NEL0 MB-203ENST00000397328 1153 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
CCDC54Q8NEL0 AC134915.1-201ENST00000426461 574 ntBASIC13.06□□□□□ -0.32
CCDC54Q8NEL0 MCF2L-AS1-201ENST00000446789 712 ntTSL 3 BASIC13.06□□□□□ -0.32
CCDC54Q8NEL0 VDAC1P7-201ENST00000462417 847 ntBASIC13.06□□□□□ -0.32
CCDC54Q8NEL0 AC093004.1-201ENST00000508850 424 ntBASIC13.06□□□□□ -0.32
CCDC54Q8NEL0 DOC2GP-202ENST00000514950 1163 ntBASIC13.06□□□□□ -0.32
CCDC54Q8NEL0 REEP4-207ENST00000523293 913 ntTSL 3 BASIC13.06□□□□□ -0.32
CCDC54Q8NEL0 AC027243.1-201ENST00000559539 758 ntTSL 3 BASIC13.06□□□□□ -0.32
CCDC54Q8NEL0 LINC01515-215ENST00000608678 854 ntTSL 5 BASIC13.06□□□□□ -0.32
CCDC54Q8NEL0 AC008738.7-201ENST00000609744 511 ntBASIC13.06□□□□□ -0.32
CCDC54Q8NEL0 BARD1-209ENST00000613192 703 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
CCDC54Q8NEL0 AC244153.1-202ENST00000617855 482 ntTSL 3 BASIC13.06□□□□□ -0.32
CCDC54Q8NEL0 UPK1A-204ENST00000617999 1268 ntAPPRIS P1 TSL 5 BASIC13.06□□□□□ -0.32
CCDC54Q8NEL0 AC004840.1-201ENST00000636359 365 ntBASIC13.06□□□□□ -0.32
CCDC54Q8NEL0 LPO-210ENST00000582328 2680 ntAPPRIS ALT2 TSL 5 BASIC13.06□□□□□ -0.32
CCDC54Q8NEL0 E2F7-201ENST00000322886 5740 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
CCDC54Q8NEL0 LINC00667-206ENST00000582363 2935 ntTSL 2 BASIC13.06□□□□□ -0.32
CCDC54Q8NEL0 MAP2K1-201ENST00000307102 3410 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
CCDC54Q8NEL0 KIF22-208ENST00000569382 2020 ntTSL 5 BASIC13.06□□□□□ -0.32
CCDC54Q8NEL0 CCT4-201ENST00000394440 2520 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
CCDC54Q8NEL0 KCNG4-201ENST00000308251 5179 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
CCDC54Q8NEL0 ACY3-201ENST00000255082 1300 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
CCDC54Q8NEL0 ADPRHL1-202ENST00000375418 1341 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
CCDC54Q8NEL0 PPM1B-205ENST00000409432 3025 ntAPPRIS ALT1 TSL 1 (best) BASIC13.06□□□□□ -0.32
CCDC54Q8NEL0 ARHGEF7-201ENST00000218789 5233 ntTSL 5 BASIC13.06□□□□□ -0.32
CCDC54Q8NEL0 TOMM34-201ENST00000372813 2062 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
CCDC54Q8NEL0 C1orf159-202ENST00000379320 2324 ntAPPRIS ALT2 TSL 2 BASIC13.06□□□□□ -0.32
CCDC54Q8NEL0 MYO7A-202ENST00000409709 7462 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
CCDC54Q8NEL0 AC058822.1-201ENST00000507166 2550 ntAPPRIS P1 TSL 2 BASIC13.06□□□□□ -0.32
CCDC54Q8NEL0 TOM1L1-201ENST00000348161 1895 ntTSL 2 BASIC13.06□□□□□ -0.32
CCDC54Q8NEL0 CAMK2B-206ENST00000353625 1624 ntAPPRIS ALT1 TSL 1 (best) BASIC13.06□□□□□ -0.32
CCDC54Q8NEL0 NEK2-201ENST00000366998 1865 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
CCDC54Q8NEL0 AC006262.1-203ENST00000598170 1634 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
CCDC54Q8NEL0 AC023090.2-201ENST00000625182 2110 ntBASIC13.06□□□□□ -0.32
CCDC54Q8NEL0 BAG2-201ENST00000370693 6651 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
CCDC54Q8NEL0 OSBPL8-203ENST00000393250 3157 ntAPPRIS ALT1 TSL 5 BASIC13.06□□□□□ -0.32
CCDC54Q8NEL0 TRMT1-201ENST00000221504 2179 ntAPPRIS ALT2 TSL 1 (best) BASIC13.05□□□□□ -0.32
CCDC54Q8NEL0 ZNF286B-205ENST00000545289 5328 ntAPPRIS P1 TSL 5 BASIC13.05□□□□□ -0.32
CCDC54Q8NEL0 HSD17B4-222ENST00000515320 2494 ntTSL 2 BASIC13.05□□□□□ -0.32
CCDC54Q8NEL0 HOGA1-203ENST00000370647 1999 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
CCDC54Q8NEL0 AL157414.3-201ENST00000624276 1954 ntBASIC13.05□□□□□ -0.32
CCDC54Q8NEL0 ITGB2-208ENST00000397857 2813 ntAPPRIS P1 TSL 5 BASIC13.05□□□□□ -0.32
CCDC54Q8NEL0 PLAT-205ENST00000519510 2030 ntTSL 5 BASIC13.05□□□□□ -0.32
CCDC54Q8NEL0 PCDHA7-201ENST00000356878 2922 ntAPPRIS ALT2 BASIC13.05□□□□□ -0.32
CCDC54Q8NEL0 DCUN1D4-201ENST00000334635 4312 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
CCDC54Q8NEL0 KHK-201ENST00000260598 2397 ntAPPRIS P5 TSL 2 BASIC13.05□□□□□ -0.32
CCDC54Q8NEL0 SMYD1-203ENST00000444564 1816 ntTSL 5 BASIC13.05□□□□□ -0.32
CCDC54Q8NEL0 UBXN1-201ENST00000294119 1291 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
CCDC54Q8NEL0 UBXN1-202ENST00000301935 1153 ntAPPRIS P2 TSL 1 (best) BASIC13.05□□□□□ -0.32
CCDC54Q8NEL0 HNRNPH1-201ENST00000329433 2114 ntTSL 2 BASIC13.05□□□□□ -0.32
CCDC54Q8NEL0 ITIH1-202ENST00000405128 1122 ntTSL 2 BASIC13.05□□□□□ -0.32
CCDC54Q8NEL0 DERL3-204ENST00000406855 1063 ntAPPRIS ALT2 TSL 1 (best) BASIC13.05□□□□□ -0.32
CCDC54Q8NEL0 AL442647.2-201ENST00000429864 857 ntBASIC13.05□□□□□ -0.32
CCDC54Q8NEL0 BASP1P1-201ENST00000430708 665 ntBASIC13.05□□□□□ -0.32
CCDC54Q8NEL0 AC078785.1-203ENST00000467342 573 ntTSL 4 BASIC13.05□□□□□ -0.32
CCDC54Q8NEL0 AJ271736.1-201ENST00000483543 773 ntTSL 5 BASIC13.05□□□□□ -0.32
CCDC54Q8NEL0 AC002310.2-201ENST00000486926 950 ntTSL 2 BASIC13.05□□□□□ -0.32
CCDC54Q8NEL0 MTFR1L-218ENST00000526894 733 ntTSL 4 BASIC13.05□□□□□ -0.32
CCDC54Q8NEL0 AC079296.1-201ENST00000531592 560 ntTSL 3 BASIC13.05□□□□□ -0.32
CCDC54Q8NEL0 AC233702.7-201ENST00000536958 924 ntTSL 5 BASIC13.05□□□□□ -0.32
CCDC54Q8NEL0 TMEM63A-209ENST00000537914 1018 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
CCDC54Q8NEL0 AC067852.1-201ENST00000585572 594 ntTSL 4 BASIC13.05□□□□□ -0.32
CCDC54Q8NEL0 AC011499.1-201ENST00000586012 581 ntAPPRIS P1 TSL 3 BASIC13.05□□□□□ -0.32
CCDC54Q8NEL0 AC092364.2-202ENST00000597012 1073 ntBASIC13.05□□□□□ -0.32
CCDC54Q8NEL0 AL022328.4-201ENST00000608025 1001 ntTSL 2 BASIC13.05□□□□□ -0.32
CCDC54Q8NEL0 AL390754.1-201ENST00000619088 582 ntBASIC13.05□□□□□ -0.32
CCDC54Q8NEL0 CACNB4-210ENST00000539935 8378 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
CCDC54Q8NEL0 OBSL1-202ENST00000373873 3297 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
CCDC54Q8NEL0 ALDH8A1-204ENST00000367847 1587 ntTSL 2 BASIC13.05□□□□□ -0.32
CCDC54Q8NEL0 ZNF324-201ENST00000196482 3000 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
CCDC54Q8NEL0 INTS11-204ENST00000421495 1868 ntTSL 2 BASIC13.05□□□□□ -0.32
CCDC54Q8NEL0 GRM7-215ENST00000486284 4241 ntAPPRIS ALT2 TSL 5 BASIC13.05□□□□□ -0.32
CCDC54Q8NEL0 AP3M2-201ENST00000174653 3661 ntAPPRIS P1 TSL 5 BASIC13.05□□□□□ -0.32
CCDC54Q8NEL0 LINC02138-201ENST00000378340 1326 ntTSL 2 BASIC13.05□□□□□ -0.32
CCDC54Q8NEL0 KRT18P28-201ENST00000453838 1332 ntBASIC13.05□□□□□ -0.32
CCDC54Q8NEL0 PRRG3-205ENST00000538575 1303 ntAPPRIS P1 TSL 5 BASIC13.05□□□□□ -0.32
CCDC54Q8NEL0 GABARAP-201ENST00000302386 1634 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
CCDC54Q8NEL0 IFRD1-205ENST00000429071 1938 ntTSL 2 BASIC13.05□□□□□ -0.32
CCDC54Q8NEL0 RIOX2-202ENST00000360258 2232 ntAPPRIS P3 TSL 1 (best) BASIC13.05□□□□□ -0.32
CCDC54Q8NEL0 MTRF1L-201ENST00000367230 3431 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
CCDC54Q8NEL0 E2F6-211ENST00000542100 3450 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
Retrieved 100 of 98,524 protein–RNA pairs in 57.7 ms