Protein–RNA interactions for Protein: Q8IWA6

CCDC60, Coiled-coil domain-containing protein 60, humanhuman

Predicted RBP Predictions only

Length 550 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC60Q8IWA6 KAT5-216ENST00000534650 1875 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
CCDC60Q8IWA6 RGS6-217ENST00000555571 1764 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.22
CCDC60Q8IWA6 PLAGL1-208ENST00000437412 2640 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
CCDC60Q8IWA6 CYP4F23P-201ENST00000593402 1579 ntBASIC16.44■□□□□ 0.22
CCDC60Q8IWA6 NAXD-202ENST00000424185 2311 ntTSL 2 BASIC16.44■□□□□ 0.22
CCDC60Q8IWA6 GRB2-201ENST00000316615 3181 ntTSL 5 BASIC16.44■□□□□ 0.22
CCDC60Q8IWA6 MSR1-201ENST00000262101 2132 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CCDC60Q8IWA6 RGS10-202ENST00000369103 804 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.22
CCDC60Q8IWA6 ATP6V1E1-202ENST00000399796 1208 ntTSL 2 BASIC16.44■□□□□ 0.22
CCDC60Q8IWA6 SMARCE1-204ENST00000400122 1263 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
CCDC60Q8IWA6 NIF3L1-205ENST00000409588 1269 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
CCDC60Q8IWA6 SLC16A6P1-201ENST00000413214 1059 ntBASIC16.44■□□□□ 0.22
CCDC60Q8IWA6 SLC25A24P2-201ENST00000415059 510 ntBASIC16.44■□□□□ 0.22
CCDC60Q8IWA6 ACTG1P2-201ENST00000415776 1125 ntBASIC16.44■□□□□ 0.22
CCDC60Q8IWA6 ACTG1P11-201ENST00000425411 1125 ntBASIC16.44■□□□□ 0.22
CCDC60Q8IWA6 UCHL1-207ENST00000508768 827 ntTSL 3 BASIC16.44■□□□□ 0.22
CCDC60Q8IWA6 AGTRAP-212ENST00000510878 849 ntTSL 3 BASIC16.44■□□□□ 0.22
CCDC60Q8IWA6 AC009779.1-201ENST00000551138 283 ntBASIC16.44■□□□□ 0.22
CCDC60Q8IWA6 AL132642.1-201ENST00000557646 553 ntTSL 4 BASIC16.44■□□□□ 0.22
CCDC60Q8IWA6 AC103988.2-201ENST00000561804 725 ntBASIC16.44■□□□□ 0.22
CCDC60Q8IWA6 TMEM219-203ENST00000561899 1249 ntAPPRIS P1 TSL 2 BASIC16.44■□□□□ 0.22
CCDC60Q8IWA6 AC025810.1-201ENST00000569986 981 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
CCDC60Q8IWA6 RN7SL774P-201ENST00000577467 290 ntBASIC16.44■□□□□ 0.22
CCDC60Q8IWA6 SMARCE1-213ENST00000578044 1184 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
CCDC60Q8IWA6 SMARCE1-216ENST00000580419 1228 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
CCDC60Q8IWA6 AC127024.2-201ENST00000581019 789 ntTSL 5 BASIC16.44■□□□□ 0.22
CCDC60Q8IWA6 HDDC2-204ENST00000608295 879 ntTSL 5 BASIC16.44■□□□□ 0.22
CCDC60Q8IWA6 MBD3L2B-202ENST00000637800 774 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CCDC60Q8IWA6 COX11-201ENST00000299335 2497 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CCDC60Q8IWA6 POFUT2-214ENST00000615172 2472 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
CCDC60Q8IWA6 TPCN1-201ENST00000335509 5274 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CCDC60Q8IWA6 ANXA6-202ENST00000377751 1430 ntTSL 2 BASIC16.44■□□□□ 0.22
CCDC60Q8IWA6 CHEK2-204ENST00000382580 1971 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
CCDC60Q8IWA6 AC139712.1-201ENST00000378256 1875 ntBASIC16.44■□□□□ 0.22
CCDC60Q8IWA6 PSMD2-201ENST00000310118 3449 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CCDC60Q8IWA6 FASTKD5-201ENST00000380266 2874 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CCDC60Q8IWA6 CIT-219ENST00000612548 1799 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
CCDC60Q8IWA6 AC144522.1-201ENST00000625111 1658 ntBASIC16.43■□□□□ 0.22
CCDC60Q8IWA6 RER1-203ENST00000378513 3000 ntTSL 3 BASIC16.43■□□□□ 0.22
CCDC60Q8IWA6 CYP4X1-201ENST00000371901 2357 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
CCDC60Q8IWA6 MARCH4-201ENST00000273067 4447 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
CCDC60Q8IWA6 PXN-201ENST00000228307 3785 ntAPPRIS P4 TSL 1 (best) BASIC16.43■□□□□ 0.22
CCDC60Q8IWA6 FAS-202ENST00000352159 1722 ntTSL 5 BASIC16.43■□□□□ 0.22
CCDC60Q8IWA6 CLSTN1-201ENST00000361311 4647 ntAPPRIS P3 TSL 1 (best) BASIC16.43■□□□□ 0.22
CCDC60Q8IWA6 PPP1R21-202ENST00000294952 3142 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
CCDC60Q8IWA6 IYD-204ENST00000392255 1180 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
CCDC60Q8IWA6 HNRNPA1P27-201ENST00000412087 955 ntBASIC16.43■□□□□ 0.22
CCDC60Q8IWA6 AC011742.3-201ENST00000439053 820 ntBASIC16.43■□□□□ 0.22
CCDC60Q8IWA6 MACROD2-AS1-202ENST00000455291 663 ntTSL 2 BASIC16.43■□□□□ 0.22
CCDC60Q8IWA6 AP000696.1-201ENST00000457669 1133 ntTSL 3 BASIC16.43■□□□□ 0.22
CCDC60Q8IWA6 AC006122.1-201ENST00000493323 440 ntBASIC16.43■□□□□ 0.22
CCDC60Q8IWA6 AC125604.1-201ENST00000496255 707 ntBASIC16.43■□□□□ 0.22
CCDC60Q8IWA6 MSC-AS1-204ENST00000518916 864 ntTSL 3 BASIC16.43■□□□□ 0.22
CCDC60Q8IWA6 AC015689.1-201ENST00000525365 462 ntTSL 2 BASIC16.43■□□□□ 0.22
CCDC60Q8IWA6 GFER-204ENST00000567719 483 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
CCDC60Q8IWA6 CYB5D1-202ENST00000570446 570 ntTSL 4 BASIC16.43■□□□□ 0.22
CCDC60Q8IWA6 PYY-202ENST00000592796 580 ntAPPRIS ALT1 TSL 1 (best) BASIC16.43■□□□□ 0.22
CCDC60Q8IWA6 TUBB4A-212ENST00000601152 590 ntTSL 4 BASIC16.43■□□□□ 0.22
CCDC60Q8IWA6 AL132994.2-201ENST00000603120 687 ntBASIC16.43■□□□□ 0.22
CCDC60Q8IWA6 C17orf50-202ENST00000604830 477 ntTSL 3 BASIC16.43■□□□□ 0.22
CCDC60Q8IWA6 AL136295.7-201ENST00000619226 1200 ntBASIC16.43■□□□□ 0.22
CCDC60Q8IWA6 CYP1B1-AS1-221ENST00000627172 995 ntTSL 5 BASIC16.43■□□□□ 0.22
CCDC60Q8IWA6 DUOXA1-210ENST00000559014 1965 ntTSL 2 BASIC16.43■□□□□ 0.22
CCDC60Q8IWA6 PDE8B-202ENST00000333194 2572 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
CCDC60Q8IWA6 MAOB-201ENST00000378069 2566 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
CCDC60Q8IWA6 POMK-201ENST00000331373 1865 ntAPPRIS P1 TSL 2 BASIC16.43■□□□□ 0.22
CCDC60Q8IWA6 CRLS1-203ENST00000452938 3859 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
CCDC60Q8IWA6 SIKE1-203ENST00000369528 5506 ntAPPRIS ALT1 TSL 1 (best) BASIC16.43■□□□□ 0.22
CCDC60Q8IWA6 ALAS2-202ENST00000335854 1795 ntTSL 2 BASIC16.43■□□□□ 0.22
CCDC60Q8IWA6 OSGIN2-202ENST00000451899 4266 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
CCDC60Q8IWA6 PYGM-202ENST00000377432 2611 ntTSL 2 BASIC16.43■□□□□ 0.22
CCDC60Q8IWA6 ZNF252P-AS1-201ENST00000527067 3236 ntBASIC16.43■□□□□ 0.22
CCDC60Q8IWA6 NR4A1-204ENST00000394825 2528 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
CCDC60Q8IWA6 AP000552.1-203ENST00000416615 1930 ntTSL 5 BASIC16.43■□□□□ 0.22
CCDC60Q8IWA6 AC063926.3-201ENST00000624734 5658 ntBASIC16.43■□□□□ 0.22
CCDC60Q8IWA6 ALDOA-228ENST00000627059 2402 ntAPPRIS ALT1 TSL 5 BASIC16.43■□□□□ 0.22
CCDC60Q8IWA6 CACNB3-201ENST00000301050 2696 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CCDC60Q8IWA6 TPO-203ENST00000346956 2923 ntTSL 5 BASIC16.42■□□□□ 0.22
CCDC60Q8IWA6 GSTCD-206ENST00000507281 2091 ntTSL 5 BASIC16.42■□□□□ 0.22
CCDC60Q8IWA6 HTR3A-202ENST00000355556 2331 ntTSL 2 BASIC16.42■□□□□ 0.22
CCDC60Q8IWA6 MLF1-201ENST00000355893 2203 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CCDC60Q8IWA6 FGD5P1-202ENST00000614866 2498 ntBASIC16.42■□□□□ 0.22
CCDC60Q8IWA6 DNAJB9-201ENST00000249356 2715 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CCDC60Q8IWA6 UBAP1-201ENST00000297661 2735 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CCDC60Q8IWA6 CICP14-201ENST00000629111 2732 ntBASIC16.42■□□□□ 0.22
CCDC60Q8IWA6 CTSD-201ENST00000236671 2123 ntAPPRIS P2 TSL 1 (best) BASIC16.42■□□□□ 0.22
CCDC60Q8IWA6 GARS-201ENST00000389266 2634 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CCDC60Q8IWA6 PIDD1-202ENST00000411829 2886 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
CCDC60Q8IWA6 FZD4-201ENST00000531380 7383 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CCDC60Q8IWA6 GLIPR1L2-204ENST00000550916 2609 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
CCDC60Q8IWA6 DAAM2-211ENST00000633794 3871 ntTSL 5 BASIC16.42■□□□□ 0.22
CCDC60Q8IWA6 JMJD1C-202ENST00000399262 8666 ntAPPRIS P3 TSL 5 BASIC16.42■□□□□ 0.22
CCDC60Q8IWA6 AZGP1-202ENST00000411734 2027 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
CCDC60Q8IWA6 MAX-201ENST00000246163 897 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
CCDC60Q8IWA6 ZNF746-201ENST00000340622 3806 ntAPPRIS P3 TSL 1 (best) BASIC16.42■□□□□ 0.22
CCDC60Q8IWA6 TAF8-202ENST00000372978 794 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
CCDC60Q8IWA6 AL357558.1-201ENST00000416646 456 ntTSL 2 BASIC16.42■□□□□ 0.22
CCDC60Q8IWA6 SEC23A-204ENST00000548032 907 ntTSL 2 BASIC16.42■□□□□ 0.22
CCDC60Q8IWA6 AL928654.3-201ENST00000552675 445 ntTSL 3 BASIC16.42■□□□□ 0.22
CCDC60Q8IWA6 AL135838.1-202ENST00000556411 441 ntTSL 2 BASIC16.42■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 55.8 ms