Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 ADAMTS8-201ENST00000257359 4010 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
USP54Q70EL1 PNPLA3-203ENST00000423180 2222 ntTSL 2 BASIC19.11■□□□□ 0.65
USP54Q70EL1 TTPAL-203ENST00000372906 1139 ntTSL 3 BASIC19.11■□□□□ 0.65
USP54Q70EL1 IGLC1-201ENST00000390321 460 ntAPPRIS P1 BASIC19.11■□□□□ 0.65
USP54Q70EL1 TCP10-202ENST00000397829 2141 ntAPPRIS P2 TSL 1 (best) BASIC19.11■□□□□ 0.65
USP54Q70EL1 AC092573.1-201ENST00000433054 884 ntBASIC19.11■□□□□ 0.65
USP54Q70EL1 ATP6V0A2-207ENST00000544833 1013 ntTSL 2 BASIC19.11■□□□□ 0.65
USP54Q70EL1 HIST2H2BF-204ENST00000545683 999 ntTSL 2 BASIC19.11■□□□□ 0.65
USP54Q70EL1 AC145285.5-201ENST00000562217 361 ntBASIC19.11■□□□□ 0.65
USP54Q70EL1 ASNA1-205ENST00000611688 1214 ntTSL 5 BASIC19.11■□□□□ 0.65
USP54Q70EL1 UBE2D1-201ENST00000373910 2659 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
USP54Q70EL1 TXNDC11-201ENST00000283033 3140 ntAPPRIS P3 TSL 2 BASIC19.11■□□□□ 0.65
USP54Q70EL1 MOV10L1-202ENST00000354853 1701 ntTSL 2 BASIC19.11■□□□□ 0.65
USP54Q70EL1 DTX4-201ENST00000227451 5642 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
USP54Q70EL1 PCGF2-203ENST00000616129 1534 ntTSL 5 BASIC19.11■□□□□ 0.65
USP54Q70EL1 LINC00882-204ENST00000484698 2718 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
USP54Q70EL1 BIN3-202ENST00000399977 1340 ntTSL 2 BASIC19.11■□□□□ 0.65
USP54Q70EL1 HSP90B1-201ENST00000299767 2858 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
USP54Q70EL1 SLC37A3-201ENST00000326232 3349 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
USP54Q70EL1 CLDN22-201ENST00000323319 2581 ntAPPRIS P1 BASIC19.11■□□□□ 0.65
USP54Q70EL1 SIDT1-202ENST00000393830 2572 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
USP54Q70EL1 MIB2-202ENST00000378708 3012 ntAPPRIS ALT2 TSL 5 BASIC19.11■□□□□ 0.65
USP54Q70EL1 NCK2-203ENST00000393349 2371 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
USP54Q70EL1 FUCA1P1-201ENST00000374476 1351 ntBASIC19.11■□□□□ 0.65
USP54Q70EL1 ASGR1-209ENST00000619926 1384 ntTSL 5 BASIC19.11■□□□□ 0.65
USP54Q70EL1 DOK1-202ENST00000340004 1722 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
USP54Q70EL1 PACSIN2-201ENST00000263246 3249 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
USP54Q70EL1 AC232323.1-201ENST00000540724 2099 ntBASIC19.11■□□□□ 0.65
USP54Q70EL1 MED11-201ENST00000293777 833 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
USP54Q70EL1 CXCL12-205ENST00000395794 1052 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
USP54Q70EL1 ORMDL1-204ENST00000409519 1223 ntTSL 3 BASIC19.11■□□□□ 0.65
USP54Q70EL1 IDS-203ENST00000428056 1213 ntTSL 2 BASIC19.11■□□□□ 0.65
USP54Q70EL1 AC093673.1-201ENST00000429630 648 ntTSL 2 BASIC19.11■□□□□ 0.65
USP54Q70EL1 RPS27L-203ENST00000439025 970 ntTSL 2 BASIC19.11■□□□□ 0.65
USP54Q70EL1 STK24P1-201ENST00000455035 1291 ntBASIC19.11■□□□□ 0.65
USP54Q70EL1 C21orf62-204ENST00000490358 1155 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
USP54Q70EL1 NSD1-211ENST00000511258 809 ntTSL 3 BASIC19.11■□□□□ 0.65
USP54Q70EL1 CD59-210ENST00000528700 652 ntAPPRIS P2 TSL 2 BASIC19.11■□□□□ 0.65
USP54Q70EL1 ORAOV1-209ENST00000538554 1000 ntTSL 2 BASIC19.11■□□□□ 0.65
USP54Q70EL1 LINC01481-204ENST00000550216 494 ntTSL 2 BASIC19.11■□□□□ 0.65
USP54Q70EL1 FOXN3-AS2-201ENST00000554071 1262 ntBASIC19.11■□□□□ 0.65
USP54Q70EL1 C17orf62-216ENST00000578919 841 ntAPPRIS P1 TSL 3 BASIC19.11■□□□□ 0.65
USP54Q70EL1 AL451007.2-201ENST00000632004 563 ntBASIC19.11■□□□□ 0.65
USP54Q70EL1 HGSNAT-207ENST00000521576 2332 ntTSL 2 BASIC19.11■□□□□ 0.65
USP54Q70EL1 TMPO-AS1-202ENST00000548760 3357 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
USP54Q70EL1 FOXO1-201ENST00000379561 5735 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
USP54Q70EL1 NIT1-204ENST00000392190 1518 ntAPPRIS ALT1 TSL 3 BASIC19.11■□□□□ 0.65
USP54Q70EL1 ALG3-205ENST00000445626 1533 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
USP54Q70EL1 AC073082.1-201ENST00000602369 2103 ntAPPRIS P1 TSL 5 BASIC19.1■□□□□ 0.65
USP54Q70EL1 ACVR1B-206ENST00000542485 2362 ntTSL 2 BASIC19.1■□□□□ 0.65
USP54Q70EL1 NISCH-202ENST00000420808 2589 ntAPPRIS ALT2 TSL 5 BASIC19.1■□□□□ 0.65
USP54Q70EL1 MTFMT-201ENST00000220058 2734 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
USP54Q70EL1 CYP4X1-201ENST00000371901 2357 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
USP54Q70EL1 DPP6-205ENST00000427557 2388 ntTSL 2 BASIC19.1■□□□□ 0.65
USP54Q70EL1 RASA4-204ENST00000462172 2634 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
USP54Q70EL1 FGD4-203ENST00000472289 1629 ntTSL 2 BASIC19.1■□□□□ 0.65
USP54Q70EL1 LINC02212-201ENST00000515243 2130 ntTSL 2 BASIC19.1■□□□□ 0.65
USP54Q70EL1 AC004223.3-201ENST00000593039 1638 ntAPPRIS P5 TSL 2 BASIC19.1■□□□□ 0.65
USP54Q70EL1 PIAS3-201ENST00000369298 2761 ntTSL 5 BASIC19.1■□□□□ 0.65
USP54Q70EL1 ZNF436-AS1-201ENST00000335648 2547 ntBASIC19.1■□□□□ 0.65
USP54Q70EL1 GOLGA8UP-201ENST00000527159 1755 ntBASIC19.1■□□□□ 0.65
USP54Q70EL1 AC138904.3-201ENST00000635780 2681 ntTSL 5 BASIC19.1■□□□□ 0.65
USP54Q70EL1 NPPA-202ENST00000376480 855 ntAPPRIS P2 TSL 1 (best) BASIC19.1■□□□□ 0.65
USP54Q70EL1 TRBV4-1-201ENST00000390357 373 ntAPPRIS P1 BASIC19.1■□□□□ 0.65
USP54Q70EL1 TRBV4-2-201ENST00000390392 455 ntAPPRIS P1 BASIC19.1■□□□□ 0.65
USP54Q70EL1 AC107463.1-201ENST00000508605 667 ntTSL 3 BASIC19.1■□□□□ 0.65
USP54Q70EL1 AC011383.1-201ENST00000517474 617 ntTSL 3 BASIC19.1■□□□□ 0.65
USP54Q70EL1 AP003398.1-201ENST00000531124 318 ntBASIC19.1■□□□□ 0.65
USP54Q70EL1 AC134312.2-201ENST00000563521 608 ntTSL 2 BASIC19.1■□□□□ 0.65
USP54Q70EL1 AC011247.3-201ENST00000603297 438 ntBASIC19.1■□□□□ 0.65
USP54Q70EL1 NPPA-203ENST00000610706 849 ntAPPRIS ALT1 TSL 5 BASIC19.1■□□□□ 0.65
USP54Q70EL1 LRP5L-202ENST00000402859 1661 ntAPPRIS P2 TSL 5 BASIC19.1■□□□□ 0.65
USP54Q70EL1 TNFAIP2-201ENST00000333007 4175 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
USP54Q70EL1 PDE1C-202ENST00000396182 2420 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
USP54Q70EL1 GATAD1-201ENST00000287957 3361 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
USP54Q70EL1 PRSS50-201ENST00000460241 2960 ntAPPRIS P1 TSL 2 BASIC19.09■□□□□ 0.65
USP54Q70EL1 GSN-209ENST00000449733 2702 ntTSL 2 BASIC19.09■□□□□ 0.65
USP54Q70EL1 PGRMC1-201ENST00000217971 1911 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
USP54Q70EL1 DNM2-203ENST00000389253 3581 ntTSL 5 BASIC19.09■□□□□ 0.65
USP54Q70EL1 SLC44A3-209ENST00000532427 1912 ntTSL 2 BASIC19.09■□□□□ 0.65
USP54Q70EL1 CREB3L3-201ENST00000078445 2618 ntAPPRIS P3 TSL 1 (best) BASIC19.09■□□□□ 0.65
USP54Q70EL1 STIM2-202ENST00000465503 3613 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
USP54Q70EL1 SIAE-206ENST00000618733 1980 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
USP54Q70EL1 TIGD5-201ENST00000504548 5390 ntAPPRIS P1 BASIC19.09■□□□□ 0.65
USP54Q70EL1 GRAMD1A-203ENST00000424536 808 ntTSL 2 BASIC19.09■□□□□ 0.65
USP54Q70EL1 CHTF8-204ENST00000518041 567 ntTSL 2 BASIC19.09■□□□□ 0.65
USP54Q70EL1 C11orf97-201ENST00000542198 701 ntAPPRIS P1 TSL 5 BASIC19.09■□□□□ 0.65
USP54Q70EL1 SOCS2-AS1-204ENST00000551626 618 ntTSL 4 BASIC19.09■□□□□ 0.65
USP54Q70EL1 TUBB3-208ENST00000555576 572 ntTSL 4 BASIC19.09■□□□□ 0.65
USP54Q70EL1 CDH1-202ENST00000422392 2567 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
USP54Q70EL1 SELENOV-202ENST00000423711 1701 ntTSL 5 BASIC19.09■□□□□ 0.65
USP54Q70EL1 CBX2-202ENST00000310942 4644 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
USP54Q70EL1 PGRMC2-207ENST00000520121 3785 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
USP54Q70EL1 LINC00299-202ENST00000442956 2342 ntTSL 2 BASIC19.09■□□□□ 0.65
USP54Q70EL1 SIGLEC11-202ENST00000426971 2479 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
USP54Q70EL1 SCAF11-203ENST00000395453 1336 ntAPPRIS ALT2 TSL 2 BASIC19.09■□□□□ 0.65
USP54Q70EL1 POR-201ENST00000394893 2532 ntTSL 5 BASIC19.09■□□□□ 0.65
USP54Q70EL1 LINC00924-202ENST00000556053 2682 ntTSL 2 BASIC19.09■□□□□ 0.65
USP54Q70EL1 PPP2R5D-206ENST00000472118 2963 ntAPPRIS ALT2 TSL 5 BASIC19.09■□□□□ 0.65
USP54Q70EL1 IGSF9B-206ENST00000533871 5050 ntAPPRIS P2 TSL 5 BASIC19.09■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 64.3 ms