Protein–RNA interactions for Protein: Q6ZMZ3

SYNE3, Nesprin-3, humanhuman

Predictions only

Length 975 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3Q6ZMZ3 STUM-202ENST00000366789 4093 ntAPPRIS ALT1 TSL 5 BASIC17.57■□□□□ 0.4
SYNE3Q6ZMZ3 AC009053.1-204ENST00000429810 2355 ntTSL 2 BASIC17.57■□□□□ 0.4
SYNE3Q6ZMZ3 GTF2IRD1-201ENST00000265755 3430 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
SYNE3Q6ZMZ3 RSPO1-202ENST00000401068 2320 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
SYNE3Q6ZMZ3 GAL-201ENST00000265643 818 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
SYNE3Q6ZMZ3 IGLV4-69-201ENST00000390282 419 ntAPPRIS P1 BASIC17.57■□□□□ 0.4
SYNE3Q6ZMZ3 MXI1-205ENST00000393134 889 ntTSL 2 BASIC17.57■□□□□ 0.4
SYNE3Q6ZMZ3 POM121L8P-201ENST00000417732 1281 ntBASIC17.57■□□□□ 0.4
SYNE3Q6ZMZ3 AL583835.2-202ENST00000421363 1104 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
SYNE3Q6ZMZ3 AC068898.1-201ENST00000440750 335 ntTSL 3 BASIC17.57■□□□□ 0.4
SYNE3Q6ZMZ3 AL049698.1-202ENST00000441716 757 ntTSL 5 BASIC17.57■□□□□ 0.4
SYNE3Q6ZMZ3 POM121L9P-203ENST00000441984 1285 ntBASIC17.57■□□□□ 0.4
SYNE3Q6ZMZ3 FTLP10-202ENST00000505798 471 ntBASIC17.57■□□□□ 0.4
SYNE3Q6ZMZ3 AC116456.1-201ENST00000526646 815 ntTSL 3 BASIC17.57■□□□□ 0.4
SYNE3Q6ZMZ3 RORA-AS1-205ENST00000559824 761 ntTSL 3 BASIC17.57■□□□□ 0.4
SYNE3Q6ZMZ3 RAMP2-202ENST00000587142 549 ntAPPRIS ALT1 TSL 1 (best) BASIC17.57■□□□□ 0.4
SYNE3Q6ZMZ3 RAMP2-203ENST00000588576 573 ntTSL 5 BASIC17.57■□□□□ 0.4
SYNE3Q6ZMZ3 AC008750.3-201ENST00000601148 437 ntTSL 5 BASIC17.57■□□□□ 0.4
SYNE3Q6ZMZ3 LINC02351-201ENST00000614728 289 ntTSL 2 BASIC17.57■□□□□ 0.4
SYNE3Q6ZMZ3 LARP4-220ENST00000615080 856 ntTSL 5 BASIC17.57■□□□□ 0.4
SYNE3Q6ZMZ3 SCLY-202ENST00000409736 1774 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
SYNE3Q6ZMZ3 IMPACT-201ENST00000284202 3792 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
SYNE3Q6ZMZ3 MAGEA2-204ENST00000611674 1728 ntAPPRIS P1 TSL 2 BASIC17.57■□□□□ 0.4
SYNE3Q6ZMZ3 DPY19L2P2-201ENST00000312132 4078 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
SYNE3Q6ZMZ3 ESS2-201ENST00000252137 5392 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
SYNE3Q6ZMZ3 TRMO-203ENST00000375119 1647 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
SYNE3Q6ZMZ3 ZC3H14-204ENST00000336693 2007 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
SYNE3Q6ZMZ3 AL928970.1-201ENST00000422679 2923 ntTSL 5 BASIC17.57■□□□□ 0.4
SYNE3Q6ZMZ3 AUTS2-217ENST00000611706 4583 ntTSL 5 BASIC17.57■□□□□ 0.4
SYNE3Q6ZMZ3 RAB11FIP1-201ENST00000287263 6253 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
SYNE3Q6ZMZ3 DMAC2-204ENST00000438807 1454 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
SYNE3Q6ZMZ3 PPP1R1B-205ENST00000579000 1466 ntTSL 5 BASIC17.56■□□□□ 0.4
SYNE3Q6ZMZ3 FBXO5-202ENST00000367241 2221 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
SYNE3Q6ZMZ3 MAGED4B-207ENST00000485287 2618 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
SYNE3Q6ZMZ3 GOLGA8DP-202ENST00000341390 2184 ntBASIC17.56■□□□□ 0.4
SYNE3Q6ZMZ3 PAPOLA-201ENST00000216277 4519 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
SYNE3Q6ZMZ3 PRF1-201ENST00000373209 2492 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
SYNE3Q6ZMZ3 CLUHP2-201ENST00000426660 1303 ntBASIC17.56■□□□□ 0.4
SYNE3Q6ZMZ3 VARS2-211ENST00000541562 3566 ntTSL 2 BASIC17.56■□□□□ 0.4
SYNE3Q6ZMZ3 AC015656.1-201ENST00000624209 3578 ntBASIC17.56■□□□□ 0.4
SYNE3Q6ZMZ3 LINC02395-201ENST00000546821 3157 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
SYNE3Q6ZMZ3 TRAK1-203ENST00000396175 5033 ntAPPRIS ALT2 TSL 5 BASIC17.56■□□□□ 0.4
SYNE3Q6ZMZ3 LETMD1-206ENST00000547008 1665 ntTSL 2 BASIC17.56■□□□□ 0.4
SYNE3Q6ZMZ3 JPH4-201ENST00000356300 4278 ntAPPRIS P2 TSL 1 (best) BASIC17.56■□□□□ 0.4
SYNE3Q6ZMZ3 SERF2-209ENST00000409646 559 ntTSL 4 BASIC17.56■□□□□ 0.4
SYNE3Q6ZMZ3 AL121983.1-201ENST00000424181 335 ntTSL 2 BASIC17.56■□□□□ 0.4
SYNE3Q6ZMZ3 HEBP2-202ENST00000448741 661 ntTSL 5 BASIC17.56■□□□□ 0.4
SYNE3Q6ZMZ3 MESTP3-201ENST00000503460 968 ntBASIC17.56■□□□□ 0.4
SYNE3Q6ZMZ3 RPL8-205ENST00000527914 551 ntTSL 3 BASIC17.56■□□□□ 0.4
SYNE3Q6ZMZ3 LINC02449-203ENST00000536034 451 ntTSL 3 BASIC17.56■□□□□ 0.4
SYNE3Q6ZMZ3 MRPL52-216ENST00000557221 922 ntTSL 2 BASIC17.56■□□□□ 0.4
SYNE3Q6ZMZ3 AC106886.1-201ENST00000568660 600 ntBASIC17.56■□□□□ 0.4
SYNE3Q6ZMZ3 KREMEN1-201ENST00000327813 2719 ntAPPRIS P3 TSL 2 BASIC17.56■□□□□ 0.4
SYNE3Q6ZMZ3 MIER1-209ENST00000401042 1648 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
SYNE3Q6ZMZ3 AMT-204ENST00000427987 1646 ntTSL 5 BASIC17.56■□□□□ 0.4
SYNE3Q6ZMZ3 USP36-201ENST00000312010 5234 ntAPPRIS P2 TSL 5 BASIC17.56■□□□□ 0.4
SYNE3Q6ZMZ3 TNFRSF11A-206ENST00000617039 3756 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
SYNE3Q6ZMZ3 TCOF1-201ENST00000323668 4832 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
SYNE3Q6ZMZ3 MIIP-201ENST00000235332 1573 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
SYNE3Q6ZMZ3 NIN-202ENST00000324330 4364 ntTSL 5 BASIC17.56■□□□□ 0.4
SYNE3Q6ZMZ3 AGPAT3-205ENST00000398063 5767 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
SYNE3Q6ZMZ3 LINC02273-201ENST00000499452 1592 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
SYNE3Q6ZMZ3 CUX1-215ENST00000556210 4044 ntAPPRIS ALT2 TSL 5 BASIC17.56■□□□□ 0.4
SYNE3Q6ZMZ3 AIFM2-202ENST00000373248 2570 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
SYNE3Q6ZMZ3 RNF170-209ENST00000534961 4116 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
SYNE3Q6ZMZ3 CNKSR2-203ENST00000425654 5668 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
SYNE3Q6ZMZ3 PPM1A-203ENST00000395076 8184 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
SYNE3Q6ZMZ3 GPSM1-202ENST00000354753 3533 ntAPPRIS ALT2 TSL 5 BASIC17.55■□□□□ 0.4
SYNE3Q6ZMZ3 GRK6-203ENST00000393576 2792 ntTSL 5 BASIC17.55■□□□□ 0.4
SYNE3Q6ZMZ3 PRR23C-201ENST00000413199 2791 ntAPPRIS P1 BASIC17.55■□□□□ 0.4
SYNE3Q6ZMZ3 HIPK3-201ENST00000303296 7408 ntTSL 5 BASIC17.55■□□□□ 0.4
SYNE3Q6ZMZ3 OSBPL5-210ENST00000525498 2733 ntTSL 2 BASIC17.55■□□□□ 0.4
SYNE3Q6ZMZ3 PGBD5-202ENST00000525115 1569 ntTSL 2 BASIC17.55■□□□□ 0.4
SYNE3Q6ZMZ3 GRSF1-201ENST00000254799 6666 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
SYNE3Q6ZMZ3 THOC7-201ENST00000295899 990 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
SYNE3Q6ZMZ3 NCR3-204ENST00000376073 1097 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
SYNE3Q6ZMZ3 BOLA2P3-201ENST00000404566 256 ntBASIC17.55■□□□□ 0.4
SYNE3Q6ZMZ3 HIST1H2BPS3-201ENST00000419683 341 ntBASIC17.55■□□□□ 0.4
SYNE3Q6ZMZ3 AC234783.1-201ENST00000441761 496 ntBASIC17.55■□□□□ 0.4
SYNE3Q6ZMZ3 AC128709.1-201ENST00000445908 600 ntTSL 3 BASIC17.55■□□□□ 0.4
SYNE3Q6ZMZ3 AC017116.1-201ENST00000445938 708 ntTSL 3 BASIC17.55■□□□□ 0.4
SYNE3Q6ZMZ3 GGTLC2-202ENST00000448514 678 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
SYNE3Q6ZMZ3 TMEM14B-212ENST00000475942 992 ntTSL 2 BASIC17.55■□□□□ 0.4
SYNE3Q6ZMZ3 KCNT1-207ENST00000487664 3845 ntAPPRIS ALT2 TSL 5 BASIC17.55■□□□□ 0.4
SYNE3Q6ZMZ3 ANAPC15-214ENST00000543587 883 ntAPPRIS ALT1 TSL 1 (best) BASIC17.55■□□□□ 0.4
SYNE3Q6ZMZ3 COX14-203ENST00000550487 739 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
SYNE3Q6ZMZ3 MAX-211ENST00000555667 574 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
SYNE3Q6ZMZ3 AP001005.4-201ENST00000572530 387 ntTSL 3 BASIC17.55■□□□□ 0.4
SYNE3Q6ZMZ3 CCL5-202ENST00000605140 1244 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
SYNE3Q6ZMZ3 AL162274.1-201ENST00000617191 1098 ntBASIC17.55■□□□□ 0.4
SYNE3Q6ZMZ3 AC138466.3-201ENST00000619983 221 ntBASIC17.55■□□□□ 0.4
SYNE3Q6ZMZ3 RIC8A-217ENST00000626818 159 ntTSL 5 BASIC17.55■□□□□ 0.4
SYNE3Q6ZMZ3 SAFB-202ENST00000454510 2650 ntAPPRIS ALT2 TSL 2 BASIC17.55■□□□□ 0.4
SYNE3Q6ZMZ3 MUC1-228ENST00000620103 1811 ntAPPRIS ALT2 TSL 5 BASIC17.55■□□□□ 0.4
SYNE3Q6ZMZ3 ZEB2-225ENST00000558170 4012 ntAPPRIS P2 TSL 1 (best) BASIC17.55■□□□□ 0.4
SYNE3Q6ZMZ3 PVR-202ENST00000344956 3166 ntAPPRIS ALT2 TSL 5 BASIC17.55■□□□□ 0.4
SYNE3Q6ZMZ3 AC140479.7-201ENST00000636301 2332 ntBASIC17.55■□□□□ 0.4
SYNE3Q6ZMZ3 MAPK7-202ENST00000308406 3149 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
SYNE3Q6ZMZ3 AC092384.2-204ENST00000565053 2566 ntTSL 2 BASIC17.55■□□□□ 0.4
SYNE3Q6ZMZ3 MAU2-201ENST00000262815 4994 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 54.6 ms