Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 CYP4F22-201ENST00000269703 2641 ntAPPRIS P1 TSL 2 BASIC13.8□□□□□ -0.2
RNF4P78317 GARS-201ENST00000389266 2634 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
RNF4P78317 ACKR3-201ENST00000272928 2203 ntAPPRIS P1 TSL 2 BASIC13.8□□□□□ -0.2
RNF4P78317 ASIC4-201ENST00000347842 2684 ntAPPRIS P2 TSL 1 (best) BASIC13.8□□□□□ -0.2
RNF4P78317 DEF8-210ENST00000563594 4450 ntAPPRIS P4 TSL 1 (best) BASIC13.8□□□□□ -0.2
RNF4P78317 TLL1-206ENST00000513213 1829 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
RNF4P78317 SLC2A11-203ENST00000345044 3219 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
RNF4P78317 MN1-201ENST00000302326 7556 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
RNF4P78317 BRF1-205ENST00000440513 2368 ntTSL 2 BASIC13.8□□□□□ -0.2
RNF4P78317 RPS19-206ENST00000598742 2359 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
RNF4P78317 MFSD13A-201ENST00000238936 2852 ntAPPRIS P1 TSL 5 BASIC13.8□□□□□ -0.2
RNF4P78317 CRK-201ENST00000300574 3880 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
RNF4P78317 GPBAR1-203ENST00000521462 1465 ntAPPRIS P1 TSL 2 BASIC13.8□□□□□ -0.2
RNF4P78317 FARP1-214ENST00000595437 4926 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
RNF4P78317 TBPL2-201ENST00000247219 2037 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
RNF4P78317 MTA2-201ENST00000278823 3058 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
RNF4P78317 CALD1-206ENST00000424922 2124 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
RNF4P78317 TAMM41-205ENST00000444133 1619 ntTSL 2 BASIC13.79□□□□□ -0.2
RNF4P78317 AC004223.3-201ENST00000593039 1638 ntAPPRIS P5 TSL 2 BASIC13.79□□□□□ -0.2
RNF4P78317 EFHC1-212ENST00000635984 3293 ntTSL 5 BASIC13.79□□□□□ -0.2
RNF4P78317 DUS4L-201ENST00000265720 2220 ntAPPRIS P1 TSL 2 BASIC13.79□□□□□ -0.2
RNF4P78317 CNPY1-203ENST00000636372 2259 ntAPPRIS ALT2 TSL 5 BASIC13.79□□□□□ -0.2
RNF4P78317 MLST8-201ENST00000301724 1735 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
RNF4P78317 C9orf47-201ENST00000334490 4829 ntAPPRIS P3 TSL 1 (best) BASIC13.79□□□□□ -0.2
RNF4P78317 HOGA1-202ENST00000370646 2488 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
RNF4P78317 FMNL1-206ENST00000587489 2487 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
RNF4P78317 LINC00665-203ENST00000438368 1863 ntTSL 5 BASIC13.79□□□□□ -0.2
RNF4P78317 OCEL1-201ENST00000215061 1133 ntAPPRIS P2 TSL 1 (best) BASIC13.79□□□□□ -0.2
RNF4P78317 AKIP1-202ENST00000309357 1232 ntAPPRIS ALT2 TSL 1 (best) BASIC13.79□□□□□ -0.2
RNF4P78317 SH3BGR-201ENST00000333634 1251 ntAPPRIS P2 TSL 1 (best) BASIC13.79□□□□□ -0.2
RNF4P78317 MIR326-201ENST00000362220 95 ntBASIC13.79□□□□□ -0.2
RNF4P78317 PSTK-202ENST00000405485 1047 ntAPPRIS P2 TSL 2 BASIC13.79□□□□□ -0.2
RNF4P78317 LINC01665-201ENST00000422917 1241 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
RNF4P78317 ACTBP11-201ENST00000436287 1126 ntBASIC13.79□□□□□ -0.2
RNF4P78317 GOLGA2P4-201ENST00000441462 777 ntBASIC13.79□□□□□ -0.2
RNF4P78317 LILRA5-204ENST00000486742 1078 ntAPPRIS ALT2 TSL 1 (best) BASIC13.79□□□□□ -0.2
RNF4P78317 CCDC153-204ENST00000503566 1295 ntAPPRIS P1 TSL 5 BASIC13.79□□□□□ -0.2
RNF4P78317 ALG3P1-201ENST00000508806 1114 ntBASIC13.79□□□□□ -0.2
RNF4P78317 GCOM2-201ENST00000509133 1104 ntBASIC13.79□□□□□ -0.2
RNF4P78317 AC090502.1-202ENST00000515416 966 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
RNF4P78317 IGHV3OR16-9-202ENST00000558425 288 ntAPPRIS ALT2 BASIC13.79□□□□□ -0.2
RNF4P78317 AC007342.4-201ENST00000566383 584 ntTSL 4 BASIC13.79□□□□□ -0.2
RNF4P78317 AC120498.3-201ENST00000568884 542 ntTSL 4 BASIC13.79□□□□□ -0.2
RNF4P78317 AC093525.1-201ENST00000569317 596 ntAPPRIS P1 TSL 3 BASIC13.79□□□□□ -0.2
RNF4P78317 TXNDC17-202ENST00000570330 459 ntTSL 2 BASIC13.79□□□□□ -0.2
RNF4P78317 DERL2-202ENST00000570848 657 ntTSL 5 BASIC13.79□□□□□ -0.2
RNF4P78317 AC139099.3-201ENST00000572850 472 ntTSL 5 BASIC13.79□□□□□ -0.2
RNF4P78317 AC011447.3-204ENST00000585498 883 ntTSL 2 BASIC13.79□□□□□ -0.2
RNF4P78317 BX088702.1-201ENST00000610784 235 ntBASIC13.79□□□□□ -0.2
RNF4P78317 MLLT10-216ENST00000621220 381 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
RNF4P78317 AL590644.3-201ENST00000635428 1228 ntTSL 5 BASIC13.79□□□□□ -0.2
RNF4P78317 MBNL1-205ENST00000355460 5941 ntAPPRIS ALT1 TSL 1 (best) BASIC13.79□□□□□ -0.2
RNF4P78317 GRAP-201ENST00000284154 2651 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
RNF4P78317 RFK-201ENST00000376736 2684 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
RNF4P78317 TBC1D25-201ENST00000376771 4042 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
RNF4P78317 COL9A1-204ENST00000370496 1372 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
RNF4P78317 DIP2A-201ENST00000400274 7023 ntAPPRIS ALT2 TSL 5 BASIC13.79□□□□□ -0.2
RNF4P78317 ANKRD50-202ENST00000515641 4212 ntTSL 2 BASIC13.79□□□□□ -0.2
RNF4P78317 CTSD-201ENST00000236671 2123 ntAPPRIS P2 TSL 1 (best) BASIC13.79□□□□□ -0.2
RNF4P78317 MAGI1-216ENST00000497477 3555 ntTSL 5 BASIC13.79□□□□□ -0.2
RNF4P78317 PDIA4-201ENST00000286091 2903 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
RNF4P78317 ZDHHC4-203ENST00000396707 1461 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
RNF4P78317 MSTO1-202ENST00000368341 2245 ntTSL 2 BASIC13.79□□□□□ -0.2
RNF4P78317 GOLGA5-201ENST00000163416 2969 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
RNF4P78317 EPOP-201ENST00000621654 3719 ntAPPRIS P1 BASIC13.79□□□□□ -0.2
RNF4P78317 MRI1-202ENST00000319545 3027 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
RNF4P78317 P2RX5-208ENST00000552050 1536 ntTSL 2 BASIC13.79□□□□□ -0.2
RNF4P78317 PPM1B-204ENST00000378551 3877 ntAPPRIS ALT1 TSL 1 (best) BASIC13.79□□□□□ -0.2
RNF4P78317 TSSC2-204ENST00000529482 2337 ntTSL 2 BASIC13.79□□□□□ -0.2
RNF4P78317 PAQR6-214ENST00000613336 1599 ntTSL 3 BASIC13.79□□□□□ -0.2
RNF4P78317 SBF1P1-201ENST00000444527 5631 ntBASIC13.79□□□□□ -0.2
RNF4P78317 FGD5P1-202ENST00000614866 2498 ntBASIC13.79□□□□□ -0.2
RNF4P78317 CYB561D1-204ENST00000420578 3326 ntAPPRIS P3 TSL 1 (best) BASIC13.79□□□□□ -0.2
RNF4P78317 SLC35A3-221ENST00000640600 3341 ntTSL 5 BASIC13.79□□□□□ -0.2
RNF4P78317 C12orf49-201ENST00000261318 8404 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
RNF4P78317 C14orf180-203ENST00000557649 2551 ntAPPRIS P3 TSL 1 (best) BASIC13.78□□□□□ -0.2
RNF4P78317 NTRK2-201ENST00000277120 8633 ntAPPRIS P3 TSL 1 (best) BASIC13.78□□□□□ -0.2
RNF4P78317 CENPK-202ENST00000396679 1734 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
RNF4P78317 DEPDC7-201ENST00000241051 1755 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
RNF4P78317 AAMP-202ENST00000420660 1761 ntTSL 2 BASIC13.78□□□□□ -0.2
RNF4P78317 SH2D3C-206ENST00000429553 2794 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
RNF4P78317 C11orf16-201ENST00000326053 1908 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
RNF4P78317 KITLG-202ENST00000347404 1948 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
RNF4P78317 PRDM15-201ENST00000269844 4881 ntAPPRIS P3 TSL 1 (best) BASIC13.78□□□□□ -0.2
RNF4P78317 DUOXA1-210ENST00000559014 1965 ntTSL 2 BASIC13.78□□□□□ -0.2
RNF4P78317 ANO10-213ENST00000451430 2019 ntTSL 2 BASIC13.78□□□□□ -0.2
RNF4P78317 AC018529.2-202ENST00000611482 3087 ntBASIC13.78□□□□□ -0.2
RNF4P78317 STXBP6-201ENST00000323944 4132 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
RNF4P78317 AC239800.3-201ENST00000424684 5243 ntTSL 5 BASIC13.78□□□□□ -0.2
RNF4P78317 AC005899.8-201ENST00000625127 3153 ntTSL 5 BASIC13.78□□□□□ -0.2
RNF4P78317 LEF1-202ENST00000379951 3477 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
RNF4P78317 CAPN2-201ENST00000295006 3573 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
RNF4P78317 ST6GAL2-204ENST00000409382 7275 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
RNF4P78317 EMC4-201ENST00000249209 852 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
RNF4P78317 CLRN1-203ENST00000328863 738 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
RNF4P78317 MAPK15-203ENST00000395108 765 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
RNF4P78317 GTF2A2-204ENST00000396063 970 ntAPPRIS P1 TSL 2 BASIC13.78□□□□□ -0.2
RNF4P78317 LINC01840-201ENST00000421870 571 ntTSL 4 BASIC13.78□□□□□ -0.2
RNF4P78317 RBM24-203ENST00000425446 1034 ntTSL 3 BASIC13.78□□□□□ -0.2
RNF4P78317 Z94721.1-201ENST00000444102 385 ntTSL 5 BASIC13.78□□□□□ -0.2
Retrieved 100 of 98,524 protein–RNA pairs in 35.2 ms