Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 AC099568.2-201ENST00000609194 695 ntBASIC15.78■□□□□ 0.12
LIG3P49916 CECR7-204ENST00000609932 568 ntTSL 2 BASIC15.78■□□□□ 0.12
LIG3P49916 ALDH3B1-203ENST00000612297 1231 ntTSL 3 BASIC15.78■□□□□ 0.12
LIG3P49916 AC007431.3-201ENST00000623221 587 ntBASIC15.78■□□□□ 0.12
LIG3P49916 ENDOV-206ENST00000518901 2549 ntTSL 2 BASIC15.78■□□□□ 0.12
LIG3P49916 SIGLEC16-202ENST00000602139 2510 ntTSL 5 BASIC15.78■□□□□ 0.12
LIG3P49916 CHRDL1-204ENST00000444321 1658 ntAPPRIS ALT1 TSL 1 (best) BASIC15.78■□□□□ 0.12
LIG3P49916 AC026790.1-201ENST00000399760 2941 ntTSL 2 BASIC15.78■□□□□ 0.12
LIG3P49916 PIK3CG-201ENST00000359195 5377 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
LIG3P49916 NCKAP5L-201ENST00000335999 4900 ntAPPRIS P1 TSL 5 BASIC15.78■□□□□ 0.12
LIG3P49916 E2F7-201ENST00000322886 5740 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
LIG3P49916 CFLAR-205ENST00000342795 1613 ntTSL 5 BASIC15.78■□□□□ 0.12
LIG3P49916 GOLIM4-202ENST00000470487 4373 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
LIG3P49916 TNFRSF11A-201ENST00000269485 3591 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
LIG3P49916 STRA6-203ENST00000416286 2750 ntTSL 5 BASIC15.78■□□□□ 0.12
LIG3P49916 FXR1-214ENST00000480918 1996 ntTSL 2 BASIC15.78■□□□□ 0.12
LIG3P49916 KIAA0391-202ENST00000321130 1589 ntTSL 3 BASIC15.78■□□□□ 0.12
LIG3P49916 CORO7-201ENST00000251166 3540 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
LIG3P49916 PPP4R4-201ENST00000304338 3868 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
LIG3P49916 CDHR5-203ENST00000397542 3489 ntAPPRIS P4 TSL 1 (best) BASIC15.78■□□□□ 0.12
LIG3P49916 NDUFV1-202ENST00000415352 1512 ntAPPRIS ALT1 TSL 2 BASIC15.78■□□□□ 0.12
LIG3P49916 POMK-203ENST00000614426 1527 ntAPPRIS P1 TSL 4 BASIC15.78■□□□□ 0.12
LIG3P49916 TOX2-202ENST00000358131 2605 ntTSL 2 BASIC15.78■□□□□ 0.12
LIG3P49916 ATP6AP2-226ENST00000637526 1862 ntAPPRIS ALT2 TSL 5 BASIC15.78■□□□□ 0.12
LIG3P49916 AL512306.2-201ENST00000444037 2219 ntTSL 2 BASIC15.78■□□□□ 0.12
LIG3P49916 BABAM1-201ENST00000359435 1472 ntAPPRIS P3 TSL 1 (best) BASIC15.78■□□□□ 0.12
LIG3P49916 RIBC2-202ENST00000614167 1479 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
LIG3P49916 LINC00221-202ENST00000619530 1499 ntTSL 2 BASIC15.78■□□□□ 0.12
LIG3P49916 SLC22A2-202ENST00000366953 2597 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
LIG3P49916 KRBA2-202ENST00000396267 2562 ntTSL 2 BASIC15.78■□□□□ 0.12
LIG3P49916 NOP14-201ENST00000314262 2889 ntAPPRIS P3 TSL 1 (best) BASIC15.77■□□□□ 0.12
LIG3P49916 DEK-201ENST00000244776 1441 ntTSL 2 BASIC15.77■□□□□ 0.12
LIG3P49916 KAT7-210ENST00000509773 1774 ntTSL 2 BASIC15.77■□□□□ 0.12
LIG3P49916 CD99L2-205ENST00000437787 3493 ntTSL 2 BASIC15.77■□□□□ 0.12
LIG3P49916 ZFP28-204ENST00000591844 3475 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
LIG3P49916 VILL-202ENST00000383759 2787 ntAPPRIS P1 TSL 5 BASIC15.77■□□□□ 0.12
LIG3P49916 HMGA2-204ENST00000403681 4473 ntAPPRIS P3 TSL 1 (best) BASIC15.77■□□□□ 0.12
LIG3P49916 KIAA2026-201ENST00000381461 6884 ntTSL 5 BASIC15.77■□□□□ 0.12
LIG3P49916 AP003397.1-201ENST00000525706 1387 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
LIG3P49916 FLII-221ENST00000578558 2377 ntTSL 5 BASIC15.77■□□□□ 0.12
LIG3P49916 PRKY-203ENST00000528056 7218 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
LIG3P49916 SNX19-201ENST00000265909 6535 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
LIG3P49916 MCM9-202ENST00000316316 5101 ntAPPRIS P1 TSL 5 BASIC15.77■□□□□ 0.12
LIG3P49916 LST1-202ENST00000303757 604 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
LIG3P49916 MRGPRF-202ENST00000320913 705 ntTSL 2 BASIC15.77■□□□□ 0.12
LIG3P49916 TMEM26-AS1-201ENST00000389640 863 ntTSL 5 BASIC15.77■□□□□ 0.12
LIG3P49916 RAC2-202ENST00000401529 569 ntTSL 4 BASIC15.77■□□□□ 0.12
LIG3P49916 RAB34-206ENST00000415040 1293 ntTSL 2 BASIC15.77■□□□□ 0.12
LIG3P49916 TMEM176B-202ENST00000429904 1206 ntAPPRIS P1 TSL 2 BASIC15.77■□□□□ 0.12
LIG3P49916 RHOA-206ENST00000454011 889 ntTSL 2 BASIC15.77■□□□□ 0.12
LIG3P49916 RN7SL692P-201ENST00000464677 288 ntBASIC15.77■□□□□ 0.12
LIG3P49916 C8orf88-201ENST00000517562 894 ntAPPRIS P1 TSL 2 BASIC15.77■□□□□ 0.12
LIG3P49916 FADS2-205ENST00000517839 469 ntTSL 3 BASIC15.77■□□□□ 0.12
LIG3P49916 C11orf98-202ENST00000525675 405 ntTSL 2 BASIC15.77■□□□□ 0.12
LIG3P49916 AC005225.4-201ENST00000557330 545 ntBASIC15.77■□□□□ 0.12
LIG3P49916 AL596325.1-201ENST00000563991 1082 ntBASIC15.77■□□□□ 0.12
LIG3P49916 AC004233.1-201ENST00000570515 608 ntTSL 4 BASIC15.77■□□□□ 0.12
LIG3P49916 MRPS23-202ENST00000578444 580 ntTSL 2 BASIC15.77■□□□□ 0.12
LIG3P49916 MIR4313-201ENST00000580760 101 ntBASIC15.77■□□□□ 0.12
LIG3P49916 AP005482.2-201ENST00000587889 310 ntTSL 5 BASIC15.77■□□□□ 0.12
LIG3P49916 AC012645.4-201ENST00000610691 1061 ntBASIC15.77■□□□□ 0.12
LIG3P49916 AL358472.5-202ENST00000641448 1267 ntBASIC15.77■□□□□ 0.12
LIG3P49916 MMAB-210ENST00000545712 4438 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
LIG3P49916 SPPL2B-209ENST00000613503 3456 ntAPPRIS P4 TSL 1 (best) BASIC15.77■□□□□ 0.12
LIG3P49916 CAPZB-204ENST00000375144 1568 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
LIG3P49916 ADAMTS14-201ENST00000373207 5260 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.11
LIG3P49916 BTD-207ENST00000449107 1820 ntAPPRIS P4 TSL 2 BASIC15.77■□□□□ 0.11
LIG3P49916 LGALS8-203ENST00000341872 2437 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.11
LIG3P49916 CATSPERE-201ENST00000366531 3038 ntAPPRIS ALT2 TSL 2 BASIC15.77■□□□□ 0.11
LIG3P49916 GRIN1-207ENST00000371560 3640 ntAPPRIS ALT1 TSL 1 (best) BASIC15.77■□□□□ 0.11
LIG3P49916 AFDN-203ENST00000366806 5962 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
LIG3P49916 GABRA1-201ENST00000023897 2083 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
LIG3P49916 RAPSN-202ENST00000352508 1452 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
LIG3P49916 TMEM143-201ENST00000293261 2560 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
LIG3P49916 MST1P2-201ENST00000457982 2291 ntBASIC15.77■□□□□ 0.11
LIG3P49916 GIT1-211ENST00000581348 2827 ntAPPRIS ALT2 TSL 2 BASIC15.76■□□□□ 0.11
LIG3P49916 PTGES3L-AARSD1-202ENST00000409103 1670 ntTSL 5 BASIC15.76■□□□□ 0.11
LIG3P49916 DSTN-201ENST00000246069 3617 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
LIG3P49916 HECTD3-202ENST00000372172 3610 ntAPPRIS P1 TSL 5 BASIC15.76■□□□□ 0.11
LIG3P49916 NWD2-201ENST00000309447 8325 ntAPPRIS P1 TSL 5 BASIC15.76■□□□□ 0.11
LIG3P49916 ANK1-201ENST00000265709 6379 ntAPPRIS ALT2 TSL 1 (best) BASIC15.76■□□□□ 0.11
LIG3P49916 CACNA2D1-201ENST00000356253 3858 ntTSL 5 BASIC15.76■□□□□ 0.11
LIG3P49916 CTIF-202ENST00000382998 4407 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
LIG3P49916 GRIN1-206ENST00000371559 3577 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
LIG3P49916 ING4-202ENST00000396807 1393 ntAPPRIS ALT1 TSL 1 (best) BASIC15.76■□□□□ 0.11
LIG3P49916 NLRP7-209ENST00000592784 3269 ntAPPRIS ALT2 TSL 1 (best) BASIC15.76■□□□□ 0.11
LIG3P49916 HVCN1-202ENST00000356742 2189 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
LIG3P49916 PTGES3L-AARSD1-204ENST00000421990 2150 ntAPPRIS P1 TSL 2 BASIC15.76■□□□□ 0.11
LIG3P49916 FGD6-203ENST00000546711 4568 ntTSL 5 BASIC15.76■□□□□ 0.11
LIG3P49916 ANKRD42-208ENST00000531895 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC15.76■□□□□ 0.11
LIG3P49916 MBD6-201ENST00000355673 4282 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
LIG3P49916 WDR17-205ENST00000508596 4294 ntAPPRIS ALT1 TSL 1 (best) BASIC15.76■□□□□ 0.11
LIG3P49916 NDRG2-226ENST00000554104 2146 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
LIG3P49916 EIF4G1-218ENST00000434061 5026 ntTSL 2 BASIC15.76■□□□□ 0.11
LIG3P49916 PKM-220ENST00000568459 1806 ntAPPRIS ALT1 TSL 1 (best) BASIC15.76■□□□□ 0.11
LIG3P49916 UNC5B-202ENST00000373192 6451 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
LIG3P49916 MLX-202ENST00000346833 2334 ntAPPRIS ALT1 TSL 1 (best) BASIC15.76■□□□□ 0.11
LIG3P49916 IKZF1-218ENST00000615491 5637 ntTSL 5 BASIC15.76■□□□□ 0.11
LIG3P49916 FIBP-201ENST00000338369 1261 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
LIG3P49916 TRAPPC3-203ENST00000373163 951 ntTSL 3 BASIC15.76■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 47.4 ms