Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 SERPINA13P-202ENST00000478994 924 ntBASIC16.67■□□□□ 0.26
CIITAP33076 FBXL8-208ENST00000521920 574 ntTSL 4 BASIC16.67■□□□□ 0.26
CIITAP33076 MIR4525-201ENST00000580000 75 ntBASIC16.67■□□□□ 0.26
CIITAP33076 NACAD-202ENST00000490531 4780 ntAPPRIS P1 TSL 5 BASIC16.67■□□□□ 0.26
CIITAP33076 TRIM29-210ENST00000528870 2217 ntTSL 2 BASIC16.67■□□□□ 0.26
CIITAP33076 ADRA2A-201ENST00000280155 3745 ntAPPRIS P1 BASIC16.67■□□□□ 0.26
CIITAP33076 GNS-201ENST00000258145 5122 ntAPPRIS P2 TSL 1 (best) BASIC16.67■□□□□ 0.26
CIITAP33076 UBXN11-202ENST00000357089 1555 ntAPPRIS ALT2 TSL 5 BASIC16.67■□□□□ 0.26
CIITAP33076 CAMKK2-211ENST00000538733 5175 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
CIITAP33076 PLEKHN1-201ENST00000379407 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
CIITAP33076 CES1-203ENST00000422046 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC16.67■□□□□ 0.26
CIITAP33076 SLC18A2-201ENST00000298472 3852 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
CIITAP33076 PPP1CA-201ENST00000312989 1389 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
CIITAP33076 LONRF1-201ENST00000398246 3594 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
CIITAP33076 PDE9A-208ENST00000398225 1963 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
CIITAP33076 SLC38A5-213ENST00000620913 1993 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
CIITAP33076 ISPD-202ENST00000407010 5524 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
CIITAP33076 NOMO2-203ENST00000543392 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
CIITAP33076 FUS-201ENST00000254108 5119 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
CIITAP33076 MPV17-201ENST00000233545 998 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
CIITAP33076 DPM3-202ENST00000368399 517 ntBASIC16.66■□□□□ 0.26
CIITAP33076 HNRNPA1P27-201ENST00000412087 955 ntBASIC16.66■□□□□ 0.26
CIITAP33076 NMNAT3-203ENST00000413939 1711 ntTSL 2 BASIC16.66■□□□□ 0.26
CIITAP33076 AC053503.1-201ENST00000429882 519 ntTSL 3 BASIC16.66■□□□□ 0.26
CIITAP33076 RASA3-IT1-201ENST00000454005 380 ntTSL 3 BASIC16.66■□□□□ 0.26
CIITAP33076 RNMTL1P1-201ENST00000454103 560 ntBASIC16.66■□□□□ 0.26
CIITAP33076 TPT1P11-201ENST00000458482 498 ntBASIC16.66■□□□□ 0.26
CIITAP33076 ABLIM3-206ENST00000506113 4569 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
CIITAP33076 BTNL8-206ENST00000508408 1717 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
CIITAP33076 PLEKHB1-206ENST00000535129 1049 ntAPPRIS ALT1 TSL 2 BASIC16.66■□□□□ 0.26
CIITAP33076 BLOC1S1-205ENST00000551926 531 ntTSL 5 BASIC16.66■□□□□ 0.26
CIITAP33076 C14orf132-204ENST00000556728 774 ntAPPRIS P1 TSL 2 BASIC16.66■□□□□ 0.26
CIITAP33076 FXYD6-217ENST00000584394 669 ntTSL 3 BASIC16.66■□□□□ 0.26
CIITAP33076 PCBP2-OT1-201ENST00000634357 590 ntBASIC16.66■□□□□ 0.26
CIITAP33076 CLIC6-202ENST00000360731 3860 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
CIITAP33076 CDK16-202ENST00000357227 3144 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
CIITAP33076 ORMDL3-202ENST00000394169 2230 ntAPPRIS P1 TSL 2 BASIC16.66■□□□□ 0.26
CIITAP33076 AC113367.3-201ENST00000508316 1912 ntBASIC16.66■□□□□ 0.26
CIITAP33076 SCLY-202ENST00000409736 1774 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
CIITAP33076 ANKRD35-201ENST00000355594 3342 ntAPPRIS P1 TSL 2 BASIC16.66■□□□□ 0.26
CIITAP33076 CYTH1-201ENST00000361101 3311 ntAPPRIS ALT1 TSL 1 (best) BASIC16.66■□□□□ 0.26
CIITAP33076 CYTH1-202ENST00000446868 3311 ntAPPRIS ALT1 TSL 5 BASIC16.66■□□□□ 0.26
CIITAP33076 ELAVL1-205ENST00000596459 1473 ntAPPRIS P1 TSL 2 BASIC16.66■□□□□ 0.26
CIITAP33076 PHACTR3-204ENST00000371015 2728 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
CIITAP33076 AL008718.2-201ENST00000609206 1313 ntBASIC16.66■□□□□ 0.26
CIITAP33076 ANO1-201ENST00000316296 2118 ntTSL 2 BASIC16.66■□□□□ 0.26
CIITAP33076 R3HDM2P2-201ENST00000401880 2116 ntBASIC16.66■□□□□ 0.26
CIITAP33076 MYADML-201ENST00000474610 2147 ntBASIC16.66■□□□□ 0.26
CIITAP33076 STOML1-206ENST00000561656 1833 ntTSL 3 BASIC16.66■□□□□ 0.26
CIITAP33076 SYN1-201ENST00000295987 3299 ntAPPRIS P3 TSL 2 BASIC16.65■□□□□ 0.26
CIITAP33076 SLC2A14-202ENST00000396589 2335 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
CIITAP33076 TUBA3D-201ENST00000321253 1546 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CIITAP33076 TMBIM7P-202ENST00000641474 1516 ntBASIC16.65■□□□□ 0.26
CIITAP33076 BAG1-210ENST00000634734 3786 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
CIITAP33076 AC020907.1-201ENST00000616460 1350 ntBASIC16.65■□□□□ 0.26
CIITAP33076 NR4A1-213ENST00000550082 2029 ntTSL 5 BASIC16.65■□□□□ 0.26
CIITAP33076 PRNP-203ENST00000430350 2539 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CIITAP33076 SLC35A1-202ENST00000369556 1720 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
CIITAP33076 CYTH2-214ENST00000641098 2721 ntAPPRIS ALT1 BASIC16.65■□□□□ 0.26
CIITAP33076 ALDH8A1-204ENST00000367847 1587 ntTSL 2 BASIC16.65■□□□□ 0.26
CIITAP33076 CEP295NL-201ENST00000322630 2090 ntTSL 2 BASIC16.65■□□□□ 0.26
CIITAP33076 DNAI1-209ENST00000614641 2598 ntAPPRIS ALT2 TSL 5 BASIC16.65■□□□□ 0.26
CIITAP33076 ATP2A2-204ENST00000539276 4094 ntAPPRIS P4 TSL 1 (best) BASIC16.65■□□□□ 0.26
CIITAP33076 MBD1-222ENST00000590208 2913 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
CIITAP33076 AC123912.2-201ENST00000594927 2409 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
CIITAP33076 GPANK1-203ENST00000375896 1910 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CIITAP33076 IRF2BP2-202ENST00000366610 4615 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
CIITAP33076 KIFC3-205ENST00000540079 2781 ntTSL 2 BASIC16.65■□□□□ 0.26
CIITAP33076 ADGRA1-203ENST00000607359 6004 ntAPPRIS ALT2 TSL 2 BASIC16.65■□□□□ 0.26
CIITAP33076 CSH1-201ENST00000316193 900 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CIITAP33076 TSPO-201ENST00000329563 955 ntAPPRIS P1 TSL 3 BASIC16.65■□□□□ 0.26
CIITAP33076 MBD3L5-201ENST00000329753 778 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CIITAP33076 HIST1H1B-201ENST00000331442 681 ntAPPRIS P1 BASIC16.65■□□□□ 0.26
CIITAP33076 KRTAP21-2-201ENST00000333892 440 ntAPPRIS P1 BASIC16.65■□□□□ 0.26
CIITAP33076 ETV2-201ENST00000379023 926 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
CIITAP33076 MIR1247-201ENST00000408206 136 ntBASIC16.65■□□□□ 0.26
CIITAP33076 IP6K2-205ENST00000413298 792 ntTSL 3 BASIC16.65■□□□□ 0.26
CIITAP33076 LIMS1-206ENST00000414829 439 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
CIITAP33076 VDAC1P1-201ENST00000439229 848 ntBASIC16.65■□□□□ 0.26
CIITAP33076 SHANK2-210ENST00000449116 939 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
CIITAP33076 OARD1-212ENST00000482515 832 ntTSL 2 BASIC16.65■□□□□ 0.26
CIITAP33076 AC021723.1-201ENST00000486306 515 ntBASIC16.65■□□□□ 0.26
CIITAP33076 LIMS3-205ENST00000487150 782 ntTSL 3 BASIC16.65■□□□□ 0.26
CIITAP33076 AC005586.1-201ENST00000488310 577 ntTSL 4 BASIC16.65■□□□□ 0.26
CIITAP33076 CCDC86-203ENST00000545580 697 ntAPPRIS ALT2 TSL 3 BASIC16.65■□□□□ 0.26
CIITAP33076 AC007376.2-201ENST00000556271 540 ntTSL 3 BASIC16.65■□□□□ 0.26
CIITAP33076 TUBB8-202ENST00000562809 820 ntTSL 5 BASIC16.65■□□□□ 0.26
CIITAP33076 TSPO-206ENST00000583777 636 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
CIITAP33076 TNNT1-209ENST00000587758 1016 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
CIITAP33076 PRCD-210ENST00000592014 462 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CIITAP33076 NKG7-204ENST00000595217 816 ntTSL 2 BASIC16.65■□□□□ 0.26
CIITAP33076 KC6-205ENST00000599934 556 ntTSL 4 BASIC16.65■□□□□ 0.26
CIITAP33076 AC009884.2-201ENST00000603110 324 ntBASIC16.65■□□□□ 0.26
CIITAP33076 LINC00924-202ENST00000556053 2682 ntTSL 2 BASIC16.65■□□□□ 0.26
CIITAP33076 RCSD1-206ENST00000537350 3044 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
CIITAP33076 C1QTNF9-201ENST00000332018 1830 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CIITAP33076 CSTB-201ENST00000291568 2164 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CIITAP33076 PAK1-201ENST00000278568 2543 ntTSL 2 BASIC16.65■□□□□ 0.26
CIITAP33076 EP400-203ENST00000333577 3092 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
CIITAP33076 ASIC4-202ENST00000358078 2741 ntAPPRIS ALT2 TSL 5 BASIC16.65■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 50.4 ms