Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 FYCO1-205ENST00000535325 8578 ntAPPRIS ALT2 TSL 5 BASIC15.66■□□□□ 0.1
BDNFP23560 MRPS17-201ENST00000285298 1845 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
BDNFP23560 NEK11-205ENST00000507910 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
BDNFP23560 RNF157-AS1-204ENST00000590137 1812 ntTSL 2 BASIC15.66■□□□□ 0.1
BDNFP23560 C3orf62-201ENST00000343010 4235 ntAPPRIS P2 TSL 1 (best) BASIC15.66■□□□□ 0.1
BDNFP23560 MAP7D1-203ENST00000373150 3238 ntAPPRIS ALT2 TSL 2 BASIC15.66■□□□□ 0.1
BDNFP23560 AC068946.1-202ENST00000318673 2745 ntAPPRIS P1 TSL 2 BASIC15.66■□□□□ 0.1
BDNFP23560 UROC1-202ENST00000383579 2735 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
BDNFP23560 STAT1-203ENST00000392323 2723 ntAPPRIS ALT1 TSL 2 BASIC15.66■□□□□ 0.1
BDNFP23560 SUCO-204ENST00000608151 5790 ntTSL 5 BASIC15.66■□□□□ 0.1
BDNFP23560 RCHY1-202ENST00000380840 1735 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
BDNFP23560 TMEM230-201ENST00000202834 1472 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
BDNFP23560 ECE1-204ENST00000415912 5099 ntAPPRIS ALT1 TSL 1 (best) BASIC15.65■□□□□ 0.1
BDNFP23560 STXBP6-201ENST00000323944 4132 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
BDNFP23560 HSPB7-202ENST00000375718 2415 ntTSL 2 BASIC15.65■□□□□ 0.1
BDNFP23560 OTUD3-201ENST00000375120 6397 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
BDNFP23560 SCYL1-208ENST00000527009 2586 ntTSL 5 BASIC15.65■□□□□ 0.1
BDNFP23560 CNTFR-204ENST00000610543 1926 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
BDNFP23560 ABCC1-201ENST00000399408 6594 ntTSL 5 BASIC15.65■□□□□ 0.1
BDNFP23560 ABCC1-202ENST00000399410 6552 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
BDNFP23560 TNRC18P2-201ENST00000417666 2714 ntBASIC15.65■□□□□ 0.1
BDNFP23560 KCNG3-202ENST00000394973 3656 ntAPPRIS ALT1 TSL 1 (best) BASIC15.65■□□□□ 0.1
BDNFP23560 SLC35A3-209ENST00000638338 2890 ntTSL 5 BASIC15.65■□□□□ 0.1
BDNFP23560 PI16-203ENST00000611814 2083 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
BDNFP23560 PER2-201ENST00000254657 6385 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
BDNFP23560 PSME1-202ENST00000382708 1136 ntTSL 2 BASIC15.65■□□□□ 0.1
BDNFP23560 NKAIN1P1-201ENST00000435754 582 ntBASIC15.65■□□□□ 0.1
BDNFP23560 AL355994.3-201ENST00000437156 466 ntTSL 2 BASIC15.65■□□□□ 0.1
BDNFP23560 AL139010.1-202ENST00000452528 1041 ntTSL 2 BASIC15.65■□□□□ 0.1
BDNFP23560 CICP12-201ENST00000455801 843 ntBASIC15.65■□□□□ 0.1
BDNFP23560 APOPT1-207ENST00000477116 906 ntTSL 3 BASIC15.65■□□□□ 0.1
BDNFP23560 SERPINA13P-202ENST00000478994 924 ntBASIC15.65■□□□□ 0.1
BDNFP23560 AC044849.1-201ENST00000519737 1188 ntBASIC15.65■□□□□ 0.1
BDNFP23560 HNRNPA1P36-201ENST00000521313 955 ntBASIC15.65■□□□□ 0.1
BDNFP23560 CRHR1-208ENST00000577353 1206 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
BDNFP23560 AC103810.3-201ENST00000583567 96 ntBASIC15.65■□□□□ 0.1
BDNFP23560 AC132192.2-201ENST00000596206 1147 ntBASIC15.65■□□□□ 0.1
BDNFP23560 KC6-205ENST00000599934 556 ntTSL 4 BASIC15.65■□□□□ 0.1
BDNFP23560 ERG28-201ENST00000256319 2633 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
BDNFP23560 CLCN2-202ENST00000344937 3187 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
BDNFP23560 JRK-209ENST00000612905 9124 ntAPPRIS P4 TSL 2 BASIC15.65■□□□□ 0.1
BDNFP23560 ASTN2-201ENST00000288520 2356 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
BDNFP23560 DPP6-205ENST00000427557 2388 ntTSL 2 BASIC15.65■□□□□ 0.1
BDNFP23560 ANKHD1-EIF4EBP3-203ENST00000532219 8246 ntAPPRIS P1 TSL 2 BASIC15.65■□□□□ 0.1
BDNFP23560 MAGED2-201ENST00000218439 1958 ntAPPRIS P2 TSL 5 BASIC15.65■□□□□ 0.1
BDNFP23560 ABTB1-202ENST00000453791 1961 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
BDNFP23560 RHOBTB2-206ENST00000522948 4959 ntAPPRIS ALT2 TSL 5 BASIC15.65■□□□□ 0.1
BDNFP23560 NANOS1-202ENST00000425699 4017 ntAPPRIS P2 BASIC15.65■□□□□ 0.1
BDNFP23560 TCP10-202ENST00000397829 2141 ntAPPRIS P2 TSL 1 (best) BASIC15.65■□□□□ 0.1
BDNFP23560 PCOLCE-201ENST00000223061 1702 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
BDNFP23560 SYNRG-223ENST00000616179 4050 ntAPPRIS ALT2 TSL 5 BASIC15.65■□□□□ 0.1
BDNFP23560 GOLGA8R-201ENST00000327271 1896 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
BDNFP23560 NEK2-201ENST00000366998 1865 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
BDNFP23560 C14orf180-203ENST00000557649 2551 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
BDNFP23560 MRPL37P1-201ENST00000592451 1337 ntBASIC15.65■□□□□ 0.1
BDNFP23560 SDHAF2-201ENST00000301761 2033 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
BDNFP23560 ANKMY1-207ENST00000403283 2874 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
BDNFP23560 PIDD1-202ENST00000411829 2886 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
BDNFP23560 SLC25A33-201ENST00000302692 3854 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
BDNFP23560 CAPN3-207ENST00000397200 1643 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
BDNFP23560 COX11-201ENST00000299335 2497 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
BDNFP23560 POFUT2-214ENST00000615172 2472 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
BDNFP23560 TP53I11-208ENST00000525680 2647 ntAPPRIS P1 TSL 2 BASIC15.64■□□□□ 0.1
BDNFP23560 ARRB2-204ENST00000412477 1779 ntTSL 2 BASIC15.64■□□□□ 0.1
BDNFP23560 GPI-205ENST00000586425 1799 ntTSL 5 BASIC15.64■□□□□ 0.1
BDNFP23560 SUCO-210ENST00000616058 5495 ntTSL 1 (best) BASIC15.64■□□□□ 0.1
BDNFP23560 ENAH-203ENST00000366843 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
BDNFP23560 TPO-203ENST00000346956 2923 ntTSL 5 BASIC15.64■□□□□ 0.09
BDNFP23560 OPCML-IT1-201ENST00000533859 2936 ntTSL 2 BASIC15.64■□□□□ 0.09
BDNFP23560 LYRM1-203ENST00000412082 1399 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
BDNFP23560 PDHB-206ENST00000474765 1503 ntTSL 5 BASIC15.64■□□□□ 0.09
BDNFP23560 GRID2IP-202ENST00000452113 3428 ntTSL 5 BASIC15.64■□□□□ 0.09
BDNFP23560 COBL-203ENST00000395542 5339 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
BDNFP23560 SNX2-201ENST00000379516 2128 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
BDNFP23560 USP35-204ENST00000530267 2419 ntTSL 2 BASIC15.64■□□□□ 0.09
BDNFP23560 PDE8B-202ENST00000333194 2572 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
BDNFP23560 ARHGAP9-201ENST00000393791 2597 ntAPPRIS P3 TSL 1 (best) BASIC15.64■□□□□ 0.09
BDNFP23560 AC010931.2-202ENST00000514871 2566 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
BDNFP23560 CYP4F22-201ENST00000269703 2641 ntAPPRIS P1 TSL 2 BASIC15.64■□□□□ 0.09
BDNFP23560 FOS-201ENST00000303562 2158 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
BDNFP23560 SLURP2-201ENST00000317543 599 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
BDNFP23560 RBM38-204ENST00000371219 760 ntTSL 2 BASIC15.64■□□□□ 0.09
BDNFP23560 AL450469.2-201ENST00000427132 499 ntTSL 3 BASIC15.64■□□□□ 0.09
BDNFP23560 FGF13-204ENST00000436198 1165 ntTSL 2 BASIC15.64■□□□□ 0.09
BDNFP23560 PLAGL1-208ENST00000437412 2640 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
BDNFP23560 GLIS3-AS1-201ENST00000451340 734 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
BDNFP23560 BTNL8-205ENST00000505126 1294 ntTSL 2 BASIC15.64■□□□□ 0.09
BDNFP23560 KLF3-AS1-204ENST00000505240 567 ntTSL 4 BASIC15.64■□□□□ 0.09
BDNFP23560 RANGRF-205ENST00000580434 749 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
BDNFP23560 C1QTNF1-AS1-202ENST00000581579 865 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
BDNFP23560 ZNF586-206ENST00000599802 581 ntTSL 3 BASIC15.64■□□□□ 0.09
BDNFP23560 AL023803.2-201ENST00000620080 638 ntBASIC15.64■□□□□ 0.09
BDNFP23560 KLF3-AS1-207ENST00000620339 558 ntTSL 4 BASIC15.64■□□□□ 0.09
BDNFP23560 AC022748.3-201ENST00000621828 275 ntBASIC15.64■□□□□ 0.09
BDNFP23560 AC027601.3-201ENST00000622907 509 ntBASIC15.64■□□□□ 0.09
BDNFP23560 TAP2-201ENST00000374897 5684 ntAPPRIS P2 TSL 1 (best) BASIC15.64■□□□□ 0.09
BDNFP23560 KDM3A-203ENST00000409556 4928 ntAPPRIS P1 TSL 5 BASIC15.64■□□□□ 0.09
BDNFP23560 WHRN-202ENST00000362057 3566 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
BDNFP23560 SLC52A3-201ENST00000217254 2654 ntAPPRIS P1 TSL 5 BASIC15.64■□□□□ 0.09
BDNFP23560 FXYD6-201ENST00000260282 1929 ntAPPRIS P2 TSL 1 (best) BASIC15.64■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 75.4 ms