Protein–RNA interactions for Protein: O95343

SIX3, Homeobox protein SIX3, humanhuman

Predicted RBP Predictions only

Length 332 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3O95343 CUL7-203ENST00000535468 5504 ntAPPRIS ALT2 TSL 2 BASIC14.59□□□□□ -0.07
SIX3O95343 TFR2-201ENST00000223051 2888 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
SIX3O95343 AL391825.1-201ENST00000457671 1364 ntBASIC14.59□□□□□ -0.07
SIX3O95343 ASPH-214ENST00000519234 2874 ntTSL 5 BASIC14.59□□□□□ -0.07
SIX3O95343 MED20-201ENST00000265350 2438 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
SIX3O95343 IGDCC3-201ENST00000327987 4479 ntAPPRIS P2 TSL 1 (best) BASIC14.58□□□□□ -0.07
SIX3O95343 MAP3K4-201ENST00000348824 5295 ntAPPRIS ALT2 TSL 5 BASIC14.58□□□□□ -0.07
SIX3O95343 RARG-203ENST00000425354 2959 ntAPPRIS P3 TSL 1 (best) BASIC14.58□□□□□ -0.07
SIX3O95343 BAIAP3-202ENST00000397488 4583 ntTSL 1 (best) BASIC14.58□□□□□ -0.07
SIX3O95343 ARMC8-220ENST00000489213 1714 ntTSL 5 BASIC14.58□□□□□ -0.07
SIX3O95343 INSC-208ENST00000530161 1702 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.07
SIX3O95343 FAM32A-201ENST00000263384 1455 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
SIX3O95343 C9orf139-202ENST00000623196 4990 ntTSL 2 BASIC14.58□□□□□ -0.08
SIX3O95343 CORO7-222ENST00000574025 2826 ntTSL 2 BASIC14.58□□□□□ -0.08
SIX3O95343 SDHAF2-201ENST00000301761 2033 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
SIX3O95343 PPIL2-202ENST00000398831 2574 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
SIX3O95343 SBF1P1-201ENST00000444527 5631 ntBASIC14.58□□□□□ -0.08
SIX3O95343 CEP295NL-201ENST00000322630 2090 ntTSL 2 BASIC14.58□□□□□ -0.08
SIX3O95343 CDH1-213ENST00000612417 2068 ntTSL 5 BASIC14.58□□□□□ -0.08
SIX3O95343 TBC1D17-201ENST00000221543 2366 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
SIX3O95343 ARHGEF26-203ENST00000465817 2353 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
SIX3O95343 TBC1D17-209ENST00000622860 2370 ntTSL 5 BASIC14.58□□□□□ -0.08
SIX3O95343 NAALADL1-204ENST00000358658 2699 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
SIX3O95343 OPA1-204ENST00000361828 6381 ntAPPRIS ALT1 TSL 5 BASIC14.58□□□□□ -0.08
SIX3O95343 NXT2-202ENST00000372103 1085 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
SIX3O95343 PFDN6-202ENST00000374607 598 ntAPPRIS P1 TSL 2 BASIC14.58□□□□□ -0.08
SIX3O95343 PFDN6-203ENST00000374610 521 ntAPPRIS P1 TSL 2 BASIC14.58□□□□□ -0.08
SIX3O95343 MAP9-202ENST00000379248 1165 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
SIX3O95343 MAGEA12-203ENST00000393900 1299 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
SIX3O95343 RTN4RL2-202ENST00000395120 582 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
SIX3O95343 ACTBP8-201ENST00000403258 1108 ntBASIC14.58□□□□□ -0.08
SIX3O95343 AC007969.1-201ENST00000433675 447 ntBASIC14.58□□□□□ -0.08
SIX3O95343 AC093459.1-202ENST00000438963 768 ntTSL 3 BASIC14.58□□□□□ -0.08
SIX3O95343 C9orf41-AS1-201ENST00000455609 719 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
SIX3O95343 AC097717.1-202ENST00000457577 740 ntTSL 3 BASIC14.58□□□□□ -0.08
SIX3O95343 AP001107.3-201ENST00000534065 544 ntTSL 4 BASIC14.58□□□□□ -0.08
SIX3O95343 HAUS2-207ENST00000568846 709 ntTSL 3 BASIC14.58□□□□□ -0.08
SIX3O95343 AC026471.2-201ENST00000569782 655 ntTSL 2 BASIC14.58□□□□□ -0.08
SIX3O95343 CYB5D1-202ENST00000570446 570 ntTSL 4 BASIC14.58□□□□□ -0.08
SIX3O95343 AC008494.3-201ENST00000606615 944 ntBASIC14.58□□□□□ -0.08
SIX3O95343 METTL26-214ENST00000614890 801 ntTSL 3 BASIC14.58□□□□□ -0.08
SIX3O95343 AJ011932.1-201ENST00000621707 465 ntBASIC14.58□□□□□ -0.08
SIX3O95343 ANO10-203ENST00000396091 2419 ntTSL 2 BASIC14.58□□□□□ -0.08
SIX3O95343 YIPF3-202ENST00000372422 1576 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
SIX3O95343 SLC38A4-201ENST00000266579 2728 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
SIX3O95343 PDPR-202ENST00000398122 2734 ntTSL 2 BASIC14.58□□□□□ -0.08
SIX3O95343 AC020915.4-201ENST00000597230 2708 ntTSL 2 BASIC14.58□□□□□ -0.08
SIX3O95343 RMND1-202ENST00000367303 1854 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
SIX3O95343 WDR27-201ENST00000423258 2465 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.08
SIX3O95343 GPR83-201ENST00000243673 4282 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
SIX3O95343 LHFPL4-201ENST00000287585 4880 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
SIX3O95343 C12orf49-201ENST00000261318 8404 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
SIX3O95343 ILF2-205ENST00000615950 1906 ntTSL 2 BASIC14.58□□□□□ -0.08
SIX3O95343 STRADA-243ENST00000640086 1925 ntTSL 5 BASIC14.58□□□□□ -0.08
SIX3O95343 PRKN-204ENST00000366896 2514 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
SIX3O95343 KLF4-201ENST00000374672 2813 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
SIX3O95343 ZNF362-205ENST00000539719 3106 ntAPPRIS P1 TSL 5 BASIC14.58□□□□□ -0.08
SIX3O95343 AC109583.3-201ENST00000641183 3128 ntAPPRIS P1 BASIC14.58□□□□□ -0.08
SIX3O95343 AL139423.1-201ENST00000606802 7923 ntTSL 5 BASIC14.58□□□□□ -0.08
SIX3O95343 C4A-259ENST00000498271 5269 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
SIX3O95343 SNPH-202ENST00000381873 4995 ntAPPRIS P3 TSL 1 (best) BASIC14.58□□□□□ -0.08
SIX3O95343 TNIK-202ENST00000341852 4727 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.08
SIX3O95343 LY9-204ENST00000368039 1364 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
SIX3O95343 AP002990.1-202ENST00000496634 5064 ntAPPRIS P1 TSL 2 BASIC14.58□□□□□ -0.08
SIX3O95343 NCKIPSD-204ENST00000416649 2925 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.08
SIX3O95343 ADI1-201ENST00000327435 2391 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
SIX3O95343 ZKSCAN4-201ENST00000377294 2375 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
SIX3O95343 GAS2L2-202ENST00000604641 3014 ntAPPRIS P2 TSL 1 (best) BASIC14.58□□□□□ -0.08
SIX3O95343 PDE4A-209ENST00000592685 2707 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
SIX3O95343 RSPH6A-203ENST00000600188 1751 ntAPPRIS ALT2 TSL 2 BASIC14.57□□□□□ -0.08
SIX3O95343 SEMA4F-210ENST00000611975 6007 ntTSL 5 BASIC14.57□□□□□ -0.08
SIX3O95343 PDE8B-203ENST00000340978 3426 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
SIX3O95343 AC020915.1-201ENST00000413518 1469 ntAPPRIS ALT2 TSL 2 BASIC14.57□□□□□ -0.08
SIX3O95343 PTPRN-201ENST00000295718 3784 ntAPPRIS P3 TSL 1 (best) BASIC14.57□□□□□ -0.08
SIX3O95343 XPNPEP1-201ENST00000322238 2467 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
SIX3O95343 VWA5B2-202ENST00000426955 4120 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
SIX3O95343 CORO7-201ENST00000251166 3540 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
SIX3O95343 IGFBP5-201ENST00000233813 6215 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
SIX3O95343 CUL3-202ENST00000344951 6592 ntTSL 2 BASIC14.57□□□□□ -0.08
SIX3O95343 FBXL12-201ENST00000247977 1852 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
SIX3O95343 SLC38A9-202ENST00000396865 2927 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
SIX3O95343 OS9-207ENST00000439210 1946 ntTSL 2 BASIC14.57□□□□□ -0.08
SIX3O95343 SERPINE3-204ENST00000524365 2293 ntAPPRIS P1 TSL 5 BASIC14.57□□□□□ -0.08
SIX3O95343 RUBCNL-212ENST00000631139 1948 ntAPPRIS ALT2 TSL 2 BASIC14.57□□□□□ -0.08
SIX3O95343 DBNDD1-203ENST00000392973 2689 ntTSL 2 BASIC14.57□□□□□ -0.08
SIX3O95343 EEF1B2-201ENST00000236957 844 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
SIX3O95343 ENDOV-201ENST00000323854 1226 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
SIX3O95343 PXMP4-202ENST00000344022 989 ntTSL 2 BASIC14.57□□□□□ -0.08
SIX3O95343 FANK1-204ENST00000368695 1296 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
SIX3O95343 TEN1-201ENST00000397640 994 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
SIX3O95343 AC087499.6-201ENST00000411576 835 ntBASIC14.57□□□□□ -0.08
SIX3O95343 ZDHHC20-IT1-201ENST00000417513 440 ntTSL 3 BASIC14.57□□□□□ -0.08
SIX3O95343 ITGA9-AS1-209ENST00000450990 562 ntTSL 4 BASIC14.57□□□□□ -0.08
SIX3O95343 FO681548.1-201ENST00000455617 1132 ntBASIC14.57□□□□□ -0.08
SIX3O95343 LINC01585-201ENST00000500496 1295 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
SIX3O95343 WASH4P-201ENST00000564273 1246 ntBASIC14.57□□□□□ -0.08
SIX3O95343 LINC02109-201ENST00000565798 869 ntTSL 5 BASIC14.57□□□□□ -0.08
SIX3O95343 HCFC1R1-203ENST00000572355 610 ntTSL 3 BASIC14.57□□□□□ -0.08
SIX3O95343 RAB11B-202ENST00000594216 894 ntTSL 2 BASIC14.57□□□□□ -0.08
SIX3O95343 DKKL1-202ENST00000594268 524 ntAPPRIS ALT2 TSL 2 BASIC14.57□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 34.1 ms