Protein–RNA interactions for Protein: O00337

SLC28A1, Sodium/nucleoside cotransporter 1, humanhuman

Predictions only

Length 649 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC28A1O00337 IL25-201ENST00000329715 1315 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
SLC28A1O00337 ATP6V1C1-202ENST00000518738 2130 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
SLC28A1O00337 KIAA1257-204ENST00000511438 2408 ntAPPRIS ALT2 TSL 2 BASIC14.37□□□□□ -0.11
SLC28A1O00337 AC055854.1-203ENST00000521141 1630 ntTSL 5 BASIC14.37□□□□□ -0.11
SLC28A1O00337 SLC41A3-204ENST00000383598 2330 ntAPPRIS P3 TSL 2 BASIC14.37□□□□□ -0.11
SLC28A1O00337 HNRNPA1P48-201ENST00000562726 1377 ntBASIC14.37□□□□□ -0.11
SLC28A1O00337 CLCN1-201ENST00000343257 3172 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
SLC28A1O00337 CCHCR1-201ENST00000376266 2625 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
SLC28A1O00337 P4HA1-205ENST00000440381 2790 ntTSL 3 BASIC14.37□□□□□ -0.11
SLC28A1O00337 ANKMY1-210ENST00000406958 2396 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
SLC28A1O00337 AC126335.2-201ENST00000623362 4637 ntBASIC14.37□□□□□ -0.11
SLC28A1O00337 KIAA1211L-201ENST00000397899 3907 ntAPPRIS P2 TSL 1 (best) BASIC14.37□□□□□ -0.11
SLC28A1O00337 IL6R-201ENST00000344086 3217 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
SLC28A1O00337 NDUFC2-201ENST00000281031 2518 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
SLC28A1O00337 SDCBP2-AS1-201ENST00000446423 1811 ntTSL 2 BASIC14.37□□□□□ -0.11
SLC28A1O00337 LRP8-201ENST00000306052 7648 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
SLC28A1O00337 SLC18B1-202ENST00000367918 472 ntTSL 5 BASIC14.37□□□□□ -0.11
SLC28A1O00337 ACKR1-201ENST00000368121 1240 ntBASIC14.37□□□□□ -0.11
SLC28A1O00337 ACTBP8-201ENST00000403258 1108 ntBASIC14.37□□□□□ -0.11
SLC28A1O00337 C14orf178-202ENST00000439131 632 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
SLC28A1O00337 AC087294.1-202ENST00000439136 487 ntTSL 3 BASIC14.37□□□□□ -0.11
SLC28A1O00337 INGX-202ENST00000489074 768 ntBASIC14.37□□□□□ -0.11
SLC28A1O00337 KRT18P25-201ENST00000508931 1278 ntBASIC14.37□□□□□ -0.11
SLC28A1O00337 ENPP7P5-201ENST00000541031 1031 ntBASIC14.37□□□□□ -0.11
SLC28A1O00337 AC009088.3-201ENST00000563605 357 ntTSL 3 BASIC14.37□□□□□ -0.11
SLC28A1O00337 NAA60-208ENST00000570819 833 ntTSL 2 BASIC14.37□□□□□ -0.11
SLC28A1O00337 RPL36-203ENST00000577222 874 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.11
SLC28A1O00337 AC015688.8-201ENST00000577746 656 ntTSL 4 BASIC14.37□□□□□ -0.11
SLC28A1O00337 AC087294.1-201ENST00000580291 1152 ntTSL 2 BASIC14.37□□□□□ -0.11
SLC28A1O00337 UPB1-201ENST00000326010 2290 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
SLC28A1O00337 SC5D-202ENST00000392789 2258 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
SLC28A1O00337 C12orf73-207ENST00000549478 1446 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
SLC28A1O00337 BANP-203ENST00000393207 2438 ntTSL 2 BASIC14.37□□□□□ -0.11
SLC28A1O00337 TRMT1-217ENST00000592062 2579 ntAPPRIS P3 TSL 5 BASIC14.37□□□□□ -0.11
SLC28A1O00337 KDELC2-201ENST00000323468 4312 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
SLC28A1O00337 SEZ6-201ENST00000317338 4471 ntAPPRIS P4 TSL 1 (best) BASIC14.37□□□□□ -0.11
SLC28A1O00337 NR4A1-213ENST00000550082 2029 ntTSL 5 BASIC14.37□□□□□ -0.11
SLC28A1O00337 MLXIPL-203ENST00000354613 3215 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
SLC28A1O00337 PIP4K2A-201ENST00000323883 1319 ntTSL 2 BASIC14.37□□□□□ -0.11
SLC28A1O00337 CLN8-205ENST00000520991 1305 ntTSL 5 BASIC14.37□□□□□ -0.11
SLC28A1O00337 MRPL37P1-201ENST00000592451 1337 ntBASIC14.37□□□□□ -0.11
SLC28A1O00337 NTMT1-204ENST00000372486 1487 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.11
SLC28A1O00337 GDF9-201ENST00000296875 1796 ntTSL 5 BASIC14.37□□□□□ -0.11
SLC28A1O00337 HSD17B6-205ENST00000554643 1751 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.11
SLC28A1O00337 MLF1-201ENST00000355893 2203 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
SLC28A1O00337 BAIAP2-220ENST00000575712 2512 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
SLC28A1O00337 ALDH4A1-206ENST00000538839 2957 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
SLC28A1O00337 ZMYM3-206ENST00000373988 6021 ntAPPRIS ALT1 TSL 5 BASIC14.36□□□□□ -0.11
SLC28A1O00337 RNF150-201ENST00000306799 4535 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
SLC28A1O00337 ZBED1-203ENST00000381223 4510 ntAPPRIS P1 TSL 2 BASIC14.36□□□□□ -0.11
SLC28A1O00337 GCLM-204ENST00000615724 3008 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
SLC28A1O00337 CLK4-201ENST00000316308 2568 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
SLC28A1O00337 CACNA2D4-220ENST00000585732 2566 ntTSL 5 BASIC14.36□□□□□ -0.11
SLC28A1O00337 NADSYN1-216ENST00000530055 2416 ntTSL 2 BASIC14.36□□□□□ -0.11
SLC28A1O00337 AC025171.1-202ENST00000499871 2271 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
SLC28A1O00337 MYADML-201ENST00000474610 2147 ntBASIC14.36□□□□□ -0.11
SLC28A1O00337 AC090505.1-201ENST00000430515 1834 ntBASIC14.36□□□□□ -0.11
SLC28A1O00337 EDIL3-201ENST00000296591 4727 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
SLC28A1O00337 POLL-204ENST00000370168 1536 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
SLC28A1O00337 SIGLECL1-208ENST00000614422 1516 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
SLC28A1O00337 POMK-203ENST00000614426 1527 ntAPPRIS P1 TSL 4 BASIC14.36□□□□□ -0.11
SLC28A1O00337 GOLGA2P7-207ENST00000559668 4253 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
SLC28A1O00337 CDH20-201ENST00000262717 3882 ntAPPRIS P1 TSL 2 BASIC14.36□□□□□ -0.11
SLC28A1O00337 PAPSS2-202ENST00000456849 3856 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
SLC28A1O00337 TUBA8-202ENST00000330423 2018 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
SLC28A1O00337 TBCE-202ENST00000406207 2012 ntAPPRIS P3 TSL 5 BASIC14.36□□□□□ -0.11
SLC28A1O00337 PML-201ENST00000268058 4508 ntAPPRIS P4 TSL 1 (best) BASIC14.36□□□□□ -0.11
SLC28A1O00337 IRF4-201ENST00000380956 5331 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
SLC28A1O00337 INSC-208ENST00000530161 1702 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
SLC28A1O00337 HIPK3-201ENST00000303296 7408 ntTSL 5 BASIC14.36□□□□□ -0.11
SLC28A1O00337 GAL3ST4-202ENST00000411994 1404 ntTSL 2 BASIC14.36□□□□□ -0.11
SLC28A1O00337 RPS6KL1-210ENST00000555647 3309 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
SLC28A1O00337 RIC1-201ENST00000251879 4127 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
SLC28A1O00337 PGGT1BP2-201ENST00000398621 1028 ntBASIC14.36□□□□□ -0.11
SLC28A1O00337 AC087499.6-201ENST00000411576 835 ntBASIC14.36□□□□□ -0.11
SLC28A1O00337 SPTLC1P1-201ENST00000447199 261 ntBASIC14.36□□□□□ -0.11
SLC28A1O00337 AC012640.1-201ENST00000509915 688 ntTSL 3 BASIC14.36□□□□□ -0.11
SLC28A1O00337 HNRNPA1P13-201ENST00000510646 963 ntBASIC14.36□□□□□ -0.11
SLC28A1O00337 CHCHD7-211ENST00000521831 573 ntTSL 2 BASIC14.36□□□□□ -0.11
SLC28A1O00337 AC084125.2-203ENST00000532766 821 ntTSL 3 BASIC14.36□□□□□ -0.11
SLC28A1O00337 FKBP11-208ENST00000550765 1030 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
SLC28A1O00337 AC091544.3-201ENST00000556424 531 ntTSL 2 BASIC14.36□□□□□ -0.11
SLC28A1O00337 AC068473.4-201ENST00000587527 585 ntTSL 4 BASIC14.36□□□□□ -0.11
SLC28A1O00337 LIM2-202ENST00000596399 861 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
SLC28A1O00337 AL356481.3-201ENST00000630523 575 ntTSL 5 BASIC14.36□□□□□ -0.11
SLC28A1O00337 TTC8-203ENST00000346301 2058 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
SLC28A1O00337 CDH1-213ENST00000612417 2068 ntTSL 5 BASIC14.36□□□□□ -0.11
SLC28A1O00337 IL17RA-201ENST00000319363 8607 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
SLC28A1O00337 IRAK1-203ENST00000369980 3666 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
SLC28A1O00337 KIAA0895L-202ENST00000561621 3500 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
SLC28A1O00337 XRCC3-211ENST00000555055 2584 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
SLC28A1O00337 GOLIM4-202ENST00000470487 4373 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
SLC28A1O00337 CUX2-201ENST00000261726 6844 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
SLC28A1O00337 FAM120A-202ENST00000375389 3585 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
SLC28A1O00337 SLC40A1-201ENST00000261024 3442 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
SLC28A1O00337 STAG3L2-201ENST00000426587 2130 ntTSL 2 BASIC14.36□□□□□ -0.11
SLC28A1O00337 PAPOLA-223ENST00000557320 3264 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
SLC28A1O00337 VASH1-203ENST00000554237 1462 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
SLC28A1O00337 GCC1-201ENST00000321407 4149 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
SLC28A1O00337 AFAP1L1-205ENST00000515000 2319 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 35.8 ms