Protein–RNA interactions for Protein: C9J1S8

TRIM49D1, Tripartite motif-containing protein 49D, humanhuman

Predictions only

Length 452 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM49D1C9J1S8 HIST3H2BB-201ENST00000620438 2364 ntAPPRIS P1 BASIC14.97□□□□□ -0.01
TRIM49D1C9J1S8 GLT1D1-201ENST00000281703 2725 ntTSL 2 BASIC14.97□□□□□ -0.01
TRIM49D1C9J1S8 CDC25B-205ENST00000439880 3096 ntAPPRIS ALT2 TSL 1 (best) BASIC14.97□□□□□ -0.01
TRIM49D1C9J1S8 SPPL3-201ENST00000353487 4148 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
TRIM49D1C9J1S8 MAPRE2-201ENST00000300249 4265 ntAPPRIS P3 TSL 1 (best) BASIC14.97□□□□□ -0.01
TRIM49D1C9J1S8 RNF157-AS1-204ENST00000590137 1812 ntTSL 2 BASIC14.97□□□□□ -0.01
TRIM49D1C9J1S8 AC020910.6-201ENST00000623084 1459 ntBASIC14.97□□□□□ -0.01
TRIM49D1C9J1S8 CILP2-202ENST00000586018 4234 ntAPPRIS ALT1 TSL 2 BASIC14.97□□□□□ -0.01
TRIM49D1C9J1S8 RNF183-206ENST00000478815 2312 ntAPPRIS P1 BASIC14.97□□□□□ -0.01
TRIM49D1C9J1S8 LINC00174-204ENST00000421767 4702 ntTSL 5 BASIC14.97□□□□□ -0.01
TRIM49D1C9J1S8 UBTF-205ENST00000526094 2459 ntTSL 5 BASIC14.97□□□□□ -0.01
TRIM49D1C9J1S8 ARL10-201ENST00000310389 10845 ntAPPRIS P1 TSL 2 BASIC14.97□□□□□ -0.01
TRIM49D1C9J1S8 AHNAK-201ENST00000257247 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC14.97□□□□□ -0.01
TRIM49D1C9J1S8 NDUFA3-203ENST00000391763 338 ntTSL 2 BASIC14.97□□□□□ -0.01
TRIM49D1C9J1S8 TSSK5P-201ENST00000423978 907 ntBASIC14.97□□□□□ -0.01
TRIM49D1C9J1S8 NRSN2-AS1-202ENST00000442637 762 ntTSL 3 BASIC14.97□□□□□ -0.01
TRIM49D1C9J1S8 DNAJB3-202ENST00000449667 1266 ntBASIC14.97□□□□□ -0.01
TRIM49D1C9J1S8 NT5C3B-215ENST00000521789 993 ntTSL 3 BASIC14.97□□□□□ -0.01
TRIM49D1C9J1S8 CCKBR-204ENST00000531712 463 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
TRIM49D1C9J1S8 DUX4L47-201ENST00000566374 394 ntBASIC14.97□□□□□ -0.01
TRIM49D1C9J1S8 LYRM1-209ENST00000568663 857 ntAPPRIS P1 TSL 4 BASIC14.97□□□□□ -0.01
TRIM49D1C9J1S8 AC009407.1-201ENST00000568958 598 ntBASIC14.97□□□□□ -0.01
TRIM49D1C9J1S8 AC129507.1-201ENST00000570711 1013 ntTSL 2 BASIC14.97□□□□□ -0.01
TRIM49D1C9J1S8 AC015911.4-201ENST00000588022 1070 ntBASIC14.97□□□□□ -0.01
TRIM49D1C9J1S8 AL662799.1-202ENST00000614205 422 ntBASIC14.97□□□□□ -0.01
TRIM49D1C9J1S8 METTL23-215ENST00000615984 1171 ntAPPRIS P1 TSL 2 BASIC14.97□□□□□ -0.01
TRIM49D1C9J1S8 MEFV-201ENST00000219596 3499 ntAPPRIS P2 TSL 1 (best) BASIC14.97□□□□□ -0.01
TRIM49D1C9J1S8 HORMAD1-201ENST00000322343 1771 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
TRIM49D1C9J1S8 RPS6KA4-202ENST00000528057 3121 ntAPPRIS ALT1 TSL 1 (best) BASIC14.97□□□□□ -0.01
TRIM49D1C9J1S8 FBXO21-202ENST00000427718 4138 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
TRIM49D1C9J1S8 CDIP1-205ENST00000563332 2774 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
TRIM49D1C9J1S8 ARHGAP45-201ENST00000313093 4273 ntAPPRIS P3 TSL 1 (best) BASIC14.97□□□□□ -0.01
TRIM49D1C9J1S8 STRADA-243ENST00000640086 1925 ntTSL 5 BASIC14.97□□□□□ -0.01
TRIM49D1C9J1S8 IMPDH1-204ENST00000419067 2431 ntTSL 3 BASIC14.97□□□□□ -0.01
TRIM49D1C9J1S8 ZBTB2-201ENST00000325144 3090 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
TRIM49D1C9J1S8 AGO3-201ENST00000246314 3211 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
TRIM49D1C9J1S8 KIFC3-204ENST00000465878 3225 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
TRIM49D1C9J1S8 UMODL1-203ENST00000400424 5516 ntAPPRIS ALT2 TSL 1 (best) BASIC14.97□□□□□ -0.01
TRIM49D1C9J1S8 INSC-208ENST00000530161 1702 ntAPPRIS ALT2 TSL 1 (best) BASIC14.97□□□□□ -0.01
TRIM49D1C9J1S8 POLD3-208ENST00000532497 1700 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
TRIM49D1C9J1S8 CICP17-201ENST00000418553 2377 ntBASIC14.97□□□□□ -0.01
TRIM49D1C9J1S8 BPI-201ENST00000262865 1874 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
TRIM49D1C9J1S8 TNPO2-202ENST00000425528 5122 ntAPPRIS P4 TSL 5 BASIC14.97□□□□□ -0.01
TRIM49D1C9J1S8 AC087521.1-201ENST00000501541 2045 ntTSL 2 BASIC14.97□□□□□ -0.01
TRIM49D1C9J1S8 MLLT3-210ENST00000630269 2040 ntAPPRIS ALT1 TSL 2 BASIC14.97□□□□□ -0.01
TRIM49D1C9J1S8 WDR45-240ENST00000635003 1376 ntTSL 3 BASIC14.97□□□□□ -0.01
TRIM49D1C9J1S8 HACD2-201ENST00000383657 4257 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
TRIM49D1C9J1S8 PHF14-201ENST00000403050 4276 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
TRIM49D1C9J1S8 CES1-203ENST00000422046 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC14.97□□□□□ -0.01
TRIM49D1C9J1S8 SMYD3-214ENST00000490107 1548 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
TRIM49D1C9J1S8 GID4-201ENST00000268719 4237 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
TRIM49D1C9J1S8 MLXIPL-204ENST00000414749 3224 ntAPPRIS ALT2 TSL 1 (best) BASIC14.96□□□□□ -0.01
TRIM49D1C9J1S8 AL137784.3-201ENST00000623858 2288 ntBASIC14.96□□□□□ -0.01
TRIM49D1C9J1S8 NFATC4-207ENST00000553469 2566 ntAPPRIS ALT2 TSL 1 (best) BASIC14.96□□□□□ -0.01
TRIM49D1C9J1S8 IFNAR2-202ENST00000342136 2899 ntAPPRIS P4 TSL 1 (best) BASIC14.96□□□□□ -0.01
TRIM49D1C9J1S8 CATSPER2P1-203ENST00000429276 1466 ntTSL 2 BASIC14.96□□□□□ -0.01
TRIM49D1C9J1S8 PLEKHD1-201ENST00000322564 4865 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
TRIM49D1C9J1S8 RHD-206ENST00000423810 1637 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
TRIM49D1C9J1S8 INHBA-203ENST00000442711 1632 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
TRIM49D1C9J1S8 RN7SL832P-201ENST00000607781 1756 ntBASIC14.96□□□□□ -0.01
TRIM49D1C9J1S8 TMEM47-201ENST00000275954 4054 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
TRIM49D1C9J1S8 STX1A-201ENST00000222812 2095 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
TRIM49D1C9J1S8 STX1A-204ENST00000395156 2050 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
TRIM49D1C9J1S8 SAMD4B-201ENST00000314471 4519 ntAPPRIS P3 TSL 1 (best) BASIC14.96□□□□□ -0.01
TRIM49D1C9J1S8 PAK1-201ENST00000278568 2543 ntTSL 2 BASIC14.96□□□□□ -0.01
TRIM49D1C9J1S8 PCDHGA3-203ENST00000619750 2695 ntAPPRIS ALT2 BASIC14.96□□□□□ -0.01
TRIM49D1C9J1S8 MIOX-201ENST00000216075 1130 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
TRIM49D1C9J1S8 H2AFZ-201ENST00000296417 979 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
TRIM49D1C9J1S8 TRMT11-201ENST00000334379 1565 ntAPPRIS P2 TSL 1 (best) BASIC14.96□□□□□ -0.01
TRIM49D1C9J1S8 CHIA-203ENST00000353665 1214 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
TRIM49D1C9J1S8 RPS6KC1-201ENST00000366959 5454 ntAPPRIS ALT1 TSL 2 BASIC14.96□□□□□ -0.01
TRIM49D1C9J1S8 RPS6KC1-202ENST00000366960 5490 ntAPPRIS P3 TSL 1 (best) BASIC14.96□□□□□ -0.01
TRIM49D1C9J1S8 S100A16-202ENST00000368704 1146 ntAPPRIS P1 TSL 2 BASIC14.96□□□□□ -0.01
TRIM49D1C9J1S8 ST7L-207ENST00000369669 1743 ntTSL 2 BASIC14.96□□□□□ -0.01
TRIM49D1C9J1S8 LY6G6C-201ENST00000375819 992 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
TRIM49D1C9J1S8 RABL2A-203ENST00000393166 1052 ntAPPRIS P3 TSL 1 (best) BASIC14.96□□□□□ -0.01
TRIM49D1C9J1S8 PCAT6-201ENST00000417262 748 ntTSL 2 BASIC14.96□□□□□ -0.01
TRIM49D1C9J1S8 NUS1P3-201ENST00000423502 862 ntBASIC14.96□□□□□ -0.01
TRIM49D1C9J1S8 AC008278.1-201ENST00000431117 568 ntTSL 4 BASIC14.96□□□□□ -0.01
TRIM49D1C9J1S8 PSMD13-203ENST00000431206 1591 ntTSL 2 BASIC14.96□□□□□ -0.01
TRIM49D1C9J1S8 RUFY1-204ENST00000437570 2642 ntAPPRIS ALT2 TSL 2 BASIC14.96□□□□□ -0.01
TRIM49D1C9J1S8 MSC-AS1-206ENST00000519751 596 ntTSL 4 BASIC14.96□□□□□ -0.01
TRIM49D1C9J1S8 RNF170-209ENST00000534961 4116 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
TRIM49D1C9J1S8 ARL6IP1-202ENST00000546206 1107 ntTSL 2 BASIC14.96□□□□□ -0.01
TRIM49D1C9J1S8 LYSMD2-204ENST00000560491 1026 ntTSL 3 BASIC14.96□□□□□ -0.01
TRIM49D1C9J1S8 PSMD7-204ENST00000567958 692 ntTSL 3 BASIC14.96□□□□□ -0.01
TRIM49D1C9J1S8 ARL16-202ENST00000570561 768 ntTSL 2 BASIC14.96□□□□□ -0.01
TRIM49D1C9J1S8 AC040162.1-202ENST00000573493 573 ntAPPRIS P1 TSL 3 BASIC14.96□□□□□ -0.01
TRIM49D1C9J1S8 SMIM22-211ENST00000615889 1047 ntAPPRIS P4 TSL 5 BASIC14.96□□□□□ -0.01
TRIM49D1C9J1S8 PRSS30P-206ENST00000641773 873 ntBASIC14.96□□□□□ -0.01
TRIM49D1C9J1S8 AFAP1-204ENST00000420658 7768 ntAPPRIS ALT1 TSL 2 BASIC14.96□□□□□ -0.01
TRIM49D1C9J1S8 ZFP28-204ENST00000591844 3475 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
TRIM49D1C9J1S8 AC009133.1-201ENST00000569981 2449 ntTSL 2 BASIC14.96□□□□□ -0.01
TRIM49D1C9J1S8 KCNJ11-204ENST00000528731 2146 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
TRIM49D1C9J1S8 ILK-201ENST00000299421 1802 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
TRIM49D1C9J1S8 NEAT1-201ENST00000499732 1811 ntTSL 2 BASIC14.96□□□□□ -0.01
TRIM49D1C9J1S8 CD300C-201ENST00000330793 1517 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.02
TRIM49D1C9J1S8 TBC1D8B-203ENST00000357242 5717 ntAPPRIS P2 TSL 1 (best) BASIC14.96□□□□□ -0.02
TRIM49D1C9J1S8 CEP131-202ENST00000374782 3505 ntAPPRIS P3 TSL 5 BASIC14.96□□□□□ -0.02
TRIM49D1C9J1S8 POLG-201ENST00000268124 4500 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 58.8 ms