Protein–RNA interactions for Protein: Q9BRP4

PAAF1, Proteasomal ATPase-associated factor 1, humanhuman

Predictions only

Length 392 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PAAF1Q9BRP4 CIT-219ENST00000612548 1799 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
PAAF1Q9BRP4 CHN2-201ENST00000222792 3530 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
PAAF1Q9BRP4 CHEK2-204ENST00000382580 1971 ntAPPRIS ALT2 TSL 1 (best) BASIC15.75■□□□□ 0.11
PAAF1Q9BRP4 ATP6V0E2-201ENST00000421974 2605 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
PAAF1Q9BRP4 BX005266.2-201ENST00000450704 1549 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
PAAF1Q9BRP4 TUBGCP6-204ENST00000439308 6078 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
PAAF1Q9BRP4 KNSTRN-201ENST00000249776 1714 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
PAAF1Q9BRP4 PNMA1-201ENST00000316836 2590 ntAPPRIS P1 BASIC15.75■□□□□ 0.11
PAAF1Q9BRP4 MAP2K3-201ENST00000316920 1246 ntTSL 5 BASIC15.75■□□□□ 0.11
PAAF1Q9BRP4 DUSP13-202ENST00000372700 781 ntTSL 3 BASIC15.75■□□□□ 0.11
PAAF1Q9BRP4 SNX2-201ENST00000379516 2128 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
PAAF1Q9BRP4 AC007274.2-201ENST00000421675 662 ntBASIC15.75■□□□□ 0.11
PAAF1Q9BRP4 AL354893.2-201ENST00000423075 529 ntTSL 5 BASIC15.75■□□□□ 0.11
PAAF1Q9BRP4 TMEM243-202ENST00000423734 601 ntTSL 2 BASIC15.75■□□□□ 0.11
PAAF1Q9BRP4 PTPA-215ENST00000432124 567 ntTSL 4 BASIC15.75■□□□□ 0.11
PAAF1Q9BRP4 SHANK2-210ENST00000449116 939 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
PAAF1Q9BRP4 SNHG14-209ENST00000456576 544 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
PAAF1Q9BRP4 DUSP13-206ENST00000472493 920 ntAPPRIS P3 TSL 1 (best) BASIC15.75■□□□□ 0.11
PAAF1Q9BRP4 LY6G6C-202ENST00000495859 937 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
PAAF1Q9BRP4 AC104561.3-201ENST00000518590 715 ntTSL 5 BASIC15.75■□□□□ 0.11
PAAF1Q9BRP4 AC090857.1-201ENST00000527400 390 ntBASIC15.75■□□□□ 0.11
PAAF1Q9BRP4 AP002387.1-201ENST00000529369 680 ntTSL 2 BASIC15.75■□□□□ 0.11
PAAF1Q9BRP4 TP53AIP1-204ENST00000530777 363 ntAPPRIS ALT2 TSL 1 (best) BASIC15.75■□□□□ 0.11
PAAF1Q9BRP4 RBM8B-201ENST00000555532 525 ntBASIC15.75■□□□□ 0.11
PAAF1Q9BRP4 GEMIN7-204ENST00000591747 576 ntAPPRIS P1 TSL 5 BASIC15.75■□□□□ 0.11
PAAF1Q9BRP4 HCG18-245ENST00000602550 559 ntTSL 4 BASIC15.75■□□□□ 0.11
PAAF1Q9BRP4 NEK5-204ENST00000617045 2127 ntAPPRIS P1 TSL 2 BASIC15.75■□□□□ 0.11
PAAF1Q9BRP4 STT3B-201ENST00000295770 4248 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
PAAF1Q9BRP4 ARNT2-209ENST00000622346 2932 ntTSL 2 BASIC15.75■□□□□ 0.11
PAAF1Q9BRP4 PAIP2-202ENST00000394795 2297 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
PAAF1Q9BRP4 PTPN5-202ENST00000396166 2299 ntTSL 2 BASIC15.75■□□□□ 0.11
PAAF1Q9BRP4 LRFN2-201ENST00000338305 3270 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
PAAF1Q9BRP4 SLC36A1-207ENST00000520701 2005 ntAPPRIS P1 TSL 5 BASIC15.75■□□□□ 0.11
PAAF1Q9BRP4 MLF1-201ENST00000355893 2203 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
PAAF1Q9BRP4 RER1-203ENST00000378513 3000 ntTSL 3 BASIC15.75■□□□□ 0.11
PAAF1Q9BRP4 ZNF324B-201ENST00000336614 2996 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
PAAF1Q9BRP4 SUOX-204ENST00000394115 2394 ntAPPRIS P1 TSL 2 BASIC15.75■□□□□ 0.11
PAAF1Q9BRP4 TARS2-203ENST00000369054 1998 ntTSL 2 BASIC15.75■□□□□ 0.11
PAAF1Q9BRP4 MBD1-217ENST00000588937 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC15.75■□□□□ 0.11
PAAF1Q9BRP4 AGER-201ENST00000375055 1369 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
PAAF1Q9BRP4 CCDC51-202ENST00000412398 1385 ntTSL 2 BASIC15.75■□□□□ 0.11
PAAF1Q9BRP4 CHRD-201ENST00000204604 3521 ntAPPRIS P3 TSL 1 (best) BASIC15.74■□□□□ 0.11
PAAF1Q9BRP4 SH3RF1-201ENST00000284637 5272 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
PAAF1Q9BRP4 MTCL1-205ENST00000517570 6009 ntAPPRIS ALT2 TSL 1 (best) BASIC15.74■□□□□ 0.11
PAAF1Q9BRP4 HGSNAT-207ENST00000521576 2332 ntTSL 2 BASIC15.74■□□□□ 0.11
PAAF1Q9BRP4 HNF1A-215ENST00000615446 2344 ntTSL 5 BASIC15.74■□□□□ 0.11
PAAF1Q9BRP4 MTA2-201ENST00000278823 3058 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
PAAF1Q9BRP4 ZCCHC17-204ENST00000546109 1705 ntTSL 2 BASIC15.74■□□□□ 0.11
PAAF1Q9BRP4 PACSIN2-201ENST00000263246 3249 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
PAAF1Q9BRP4 DIABLO-201ENST00000267169 1316 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
PAAF1Q9BRP4 LILRB5-202ENST00000345866 1864 ntTSL 2 BASIC15.74■□□□□ 0.11
PAAF1Q9BRP4 AC139712.1-201ENST00000378256 1875 ntBASIC15.74■□□□□ 0.11
PAAF1Q9BRP4 GLIPR1L2-204ENST00000550916 2609 ntAPPRIS ALT2 TSL 1 (best) BASIC15.74■□□□□ 0.11
PAAF1Q9BRP4 KRT8P21-201ENST00000430398 1491 ntBASIC15.74■□□□□ 0.11
PAAF1Q9BRP4 RPP40-201ENST00000319533 1088 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
PAAF1Q9BRP4 TMEM14B-202ENST00000379542 975 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
PAAF1Q9BRP4 AC092506.1-202ENST00000401022 528 ntBASIC15.74■□□□□ 0.11
PAAF1Q9BRP4 GGCT-203ENST00000409144 836 ntTSL 2 BASIC15.74■□□□□ 0.11
PAAF1Q9BRP4 PARVG-202ENST00000415224 999 ntTSL 2 BASIC15.74■□□□□ 0.11
PAAF1Q9BRP4 APOL3-207ENST00000424878 1240 ntAPPRIS ALT2 TSL 1 (best) BASIC15.74■□□□□ 0.11
PAAF1Q9BRP4 AL590617.2-201ENST00000432673 917 ntTSL 3 BASIC15.74■□□□□ 0.11
PAAF1Q9BRP4 HLA-DPB2-205ENST00000435074 1188 ntBASIC15.74■□□□□ 0.11
PAAF1Q9BRP4 ATP6V1G2-210ENST00000483251 662 ntTSL 3 BASIC15.74■□□□□ 0.11
PAAF1Q9BRP4 HDAC2-AS2-213ENST00000520891 603 ntTSL 4 BASIC15.74■□□□□ 0.11
PAAF1Q9BRP4 EEF1D-218ENST00000526838 926 ntAPPRIS ALT2 TSL 2 BASIC15.74■□□□□ 0.11
PAAF1Q9BRP4 RTN3P1-201ENST00000536295 711 ntBASIC15.74■□□□□ 0.11
PAAF1Q9BRP4 GGCT-201ENST00000005374 1032 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
PAAF1Q9BRP4 AC016044.1-201ENST00000560818 572 ntTSL 4 BASIC15.74■□□□□ 0.11
PAAF1Q9BRP4 AC011498.6-201ENST00000592034 510 ntTSL 5 BASIC15.74■□□□□ 0.11
PAAF1Q9BRP4 AC005901.1-201ENST00000592766 552 ntTSL 4 BASIC15.74■□□□□ 0.11
PAAF1Q9BRP4 MEG3_2.1-201ENST00000611456 105 ntBASIC15.74■□□□□ 0.11
PAAF1Q9BRP4 NDUFB5-216ENST00000611971 951 ntTSL 2 BASIC15.74■□□□□ 0.11
PAAF1Q9BRP4 AL353770.1-201ENST00000614915 403 ntBASIC15.74■□□□□ 0.11
PAAF1Q9BRP4 AC092299.1-201ENST00000632679 757 ntBASIC15.74■□□□□ 0.11
PAAF1Q9BRP4 PARP16-201ENST00000261888 2731 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
PAAF1Q9BRP4 PAK1-201ENST00000278568 2543 ntTSL 2 BASIC15.74■□□□□ 0.11
PAAF1Q9BRP4 MX1-218ENST00000619682 1980 ntTSL 5 BASIC15.74■□□□□ 0.11
PAAF1Q9BRP4 GRID2IP-201ENST00000435185 3215 ntTSL 5 BASIC15.74■□□□□ 0.11
PAAF1Q9BRP4 GRAP-201ENST00000284154 2651 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
PAAF1Q9BRP4 ELF2-201ENST00000358635 3036 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
PAAF1Q9BRP4 GLIS1-201ENST00000312233 2812 ntAPPRIS P2 TSL 2 BASIC15.74■□□□□ 0.11
PAAF1Q9BRP4 TNFRSF14-AS1-201ENST00000416860 3522 ntTSL 2 BASIC15.74■□□□□ 0.11
PAAF1Q9BRP4 KRT77-201ENST00000341809 3305 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
PAAF1Q9BRP4 SEC24D-202ENST00000419654 2786 ntTSL 5 BASIC15.74■□□□□ 0.11
PAAF1Q9BRP4 ALDOA-228ENST00000627059 2402 ntAPPRIS ALT1 TSL 5 BASIC15.74■□□□□ 0.11
PAAF1Q9BRP4 HSD17B6-207ENST00000555805 1722 ntAPPRIS P1 TSL 5 BASIC15.74■□□□□ 0.11
PAAF1Q9BRP4 PDE8B-202ENST00000333194 2572 ntAPPRIS ALT2 TSL 1 (best) BASIC15.74■□□□□ 0.11
PAAF1Q9BRP4 COL25A1-203ENST00000399132 2724 ntAPPRIS P4 TSL 5 BASIC15.74■□□□□ 0.11
PAAF1Q9BRP4 CCT4-201ENST00000394440 2520 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
PAAF1Q9BRP4 C1QTNF9-201ENST00000332018 1830 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
PAAF1Q9BRP4 SRCIN1-215ENST00000621492 4644 ntAPPRIS ALT2 TSL 5 BASIC15.73■□□□□ 0.11
PAAF1Q9BRP4 AIFM1-209ENST00000535724 2468 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
PAAF1Q9BRP4 NAA60-203ENST00000414063 2619 ntAPPRIS P1 TSL 2 BASIC15.73■□□□□ 0.11
PAAF1Q9BRP4 EML3-202ENST00000394773 3256 ntAPPRIS P2 TSL 1 (best) BASIC15.73■□□□□ 0.11
PAAF1Q9BRP4 GLUL-201ENST00000311223 4719 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
PAAF1Q9BRP4 USP35-204ENST00000530267 2419 ntTSL 2 BASIC15.73■□□□□ 0.11
PAAF1Q9BRP4 AC004922.1-201ENST00000638617 2430 ntAPPRIS P1 TSL 5 BASIC15.73■□□□□ 0.11
PAAF1Q9BRP4 SLC22A7-202ENST00000372585 2555 ntAPPRIS P4 TSL 5 BASIC15.73■□□□□ 0.11
PAAF1Q9BRP4 NFYC-215ENST00000456393 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC15.73■□□□□ 0.11
PAAF1Q9BRP4 AC068946.1-202ENST00000318673 2745 ntAPPRIS P1 TSL 2 BASIC15.73■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 64 ms